Bugfix: division by zero in overlaps #1778
Open
Travis CI / Travis CI - Pull Request
succeeded
Oct 24, 2024 in 48m 35s
Build Passed
Details
This is a pull request build.
It is running a build against the merge commit, after merging #1778 Bugfix: division by zero in overlaps.
Any changes that have been made to the main branch before the build ran are also included.
Jobs and Stages
This build has six jobs, running in two sequential stages.
Stage 1: test
This stage passed.
| Job | Perl | ENV | OS | State |
|---|---|---|---|---|
| 3893.1 |
5.10 | [One of the secure variables in your .travis.yml has an invalid format.] | Linux | passed |
| 3893.2 |
5.14 | [One of the secure variables in your .travis.yml has an invalid format.] | Linux | passed |
| 3893.3 |
5.18 | [One of the secure variables in your .travis.yml has an invalid format.] | Linux | passed |
| 3893.4 |
5.22 | [One of the secure variables in your .travis.yml has an invalid format.] | Linux | passed |
| 3893.5 |
5.26 | [One of the secure variables in your .travis.yml has an invalid format.] | Linux | passed |
Stage 2: trigger_dependent_builds
This stage passed.
| Job | Perl | ENV | OS | State |
|---|---|---|---|---|
| 3893.6 |
5.14 | [One of the secure variables in your .travis.yml has an invalid format.] | Linux | passed |
Build Configuration
| Build Option | Setting |
|---|---|
| Language | Perl |
| Operating System | Linux (Trusty) |
| Perl Versions | 5.10, 5.14, 5.18, 5.22, 5.26 |
Build Configuration
{
"language": "perl",
"os": [
"linux"
],
"dist": "trusty",
"perl": [
"5.10",
"5.14",
"5.18",
"5.22",
"5.26"
],
"env": [
"jobs={:COVERALLS=>\"true\", :DB=>\"mysql\"} global=[One of the secure variables in your .travis.yml has an invalid format.]"
],
"group": "deprecated",
"addons": {
"apt": {
"packages": [
"unzip",
"mysql-server-5.6",
"apache2",
"libmysqlclient-dev",
"libpng12-dev",
"libssl-dev",
"openssl",
"mysql-client-5.6",
"mysql-client-core-5.6"
]
}
},
"before_install": [
"export ENSEMBL_BRANCH=main",
"git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl-test.git",
"git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl.git",
"git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl-io.git",
"git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl-funcgen.git",
"git clone --branch $ENSEMBL_BRANCH --depth 1 https://github.com/Ensembl/ensembl-variation.git",
"export CWD=$PWD",
"export DEPS=$HOME/dependencies",
"mkdir -p $DEPS",
"cd $DEPS",
"$CWD/travisci/get_dependencies.sh",
"cd $CWD"
],
"install": [
"export CWD=$PWD",
"export DEPS=$HOME/dependencies",
"export KENT_SRC=\"$DEPS/kent-335_base/src\"",
"export HTSLIB_DIR=\"$DEPS/htslib\"",
"export MACHTYPE=$(uname -m)",
"export CFLAGS=\"-fPIC\"",
"export PERL5LIB=$DEPS/bioperl-live:$PERL5LIB",
"cd $DEPS",
"$CWD/travisci/build_c.sh",
"cd $CWD",
"$CWD/travisci/install_dependencies.sh",
"cp travisci/MultiTestDB.conf.travisci t/MultiTestDB.conf"
],
"script": [
"./travisci/harness.sh"
],
"jobs": {
"include": [
{
"stage": "trigger_dependent_builds",
"script": [
"./travisci/trigger-dependent-build.sh"
],
"perl": "5.14"
}
]
},
"notifications": {
"email": [
{
"on_success": "always",
"on_failure": "always"
}
]
}
}
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