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feat: make it possible to return sequences as json or ndjson #983

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fengelniederhammer
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resolves #971

PR Checklist

  • All necessary documentation has been adapted.
  • The implemented feature is covered by an appropriate test.

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github-actions bot commented Oct 14, 2024

This is a preview of the changelog of the next release. If this branch is not up-to-date with the current main branch, the changelog may not be accurate. Rebase your branch on the main branch to get the most accurate changelog.

Note that this might contain changes that are on main, but not yet released.

Changelog:

0.3.6 (2024-10-15)

Features

  • lapis: make it possible to fetch sequences in JSON and NDJSON format (bfceb68), closes #971

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@JonasKellerer JonasKellerer left a comment

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LGTM. Nice work. :)

I think only the documentation pictures need some update, but this is non-blocking.

The cache broke the build because something was outdated.
I'd rather have ci that runs a little longer than a more complicated build setup to maintain.
@fengelniederhammer fengelniederhammer force-pushed the 971-make-it-possible-to-return-sequences-as-json-or-ndjson branch from 483aede to 92510c9 Compare October 15, 2024 06:58
@fengelniederhammer fengelniederhammer merged commit 7b51a54 into main Oct 15, 2024
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@fengelniederhammer fengelniederhammer deleted the 971-make-it-possible-to-return-sequences-as-json-or-ndjson branch October 15, 2024 07:07
@corneliusroemer
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This might have been a breaking change: loculus-project/loculus#3077 (comment)

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You seem to have replaced all FASTA tests with JSON tests, thereby no longer testing that the FASTA is output correctly and not noticing that the default changed as well.

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make it possible to return sequences as JSON or NDJSON
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