1.2.0 release

.gitignore

@@ -63,6 +63,7 @@ instance/
 
 # Sphinx documentation
 docs/_build/
+docs/output.txt
 
 # PyBuilder
 target/
@@ -108,3 +109,17 @@ info/
 
 # Cython generated C code
 *.c
+*.cpp
+
+
+# generated docs
+docs/source/examples/
+docs/source/generated/
+
+
+*.DS_Store
+
+*.zip
+
+*.vtu
+*.vtr

.travis.yml

@@ -1,137 +1,100 @@
 language: python
+python: 3.8
 
-matrix:
-  include:
-    - name: "Linux py27"
-      sudo: required
-      language: python
-      python: 2.7
-      services: docker
-      env:
-        - PIP=pip
-        - CIBW_BUILD="cp27-*"
-        - COVER="off"
+# setuptools-scm needs all tags in order to obtain a proper version
+git:
+  depth: false
+
+env:
+  global:
+    - TWINE_USERNAME=geostatframework
+    - CIBW_BEFORE_BUILD="pip install numpy==1.17.3 cython==0.29.14 setuptools"
+    - CIBW_TEST_REQUIRES=pytest
+    - CIBW_TEST_COMMAND="pytest -v {project}/tests"
 
-    - name: "Linux py34"
-      sudo: required
-      language: python
-      python: 3.4
+before_install:
+  - |
+    if [[ "$TRAVIS_OS_NAME" = windows ]]; then
+        choco install python --version 3.8.0
+        export PATH="/c/Python38:/c/Python38/Scripts:$PATH"
+        # make sure it's on PATH as 'python3'
+        ln -s /c/Python38/python.exe /c/Python38/python3.exe
+    fi
+
+script:
+  - python3 -m pip install cibuildwheel==1.3.0
+  - python3 -m cibuildwheel --output-dir dist
+
+after_success:
+  - |
+    if [[ $TRAVIS_PULL_REQUEST == 'false' ]]; then
+      python3 -m pip install twine
+      python3 -m twine upload --verbose --skip-existing --repository-url https://test.pypi.org/legacy/ dist/*
+      if [[ $TRAVIS_TAG ]]; then python3 -m twine upload --verbose --skip-existing dist/*; fi
+    fi
+
+notifications:
+  email:
+    recipients:
+      - info@geostat-framework.org
+
+jobs:
+  include:
+    - name: "sdist and coverage"
       services: docker
-      env:
-        - PIP=pip
-        - CIBW_BUILD="cp34-*"
-        - COVER="off"
+      env: OMP_NUM_THREADS=4
+      script:
+        - python3 -m pip install -U setuptools pytest-cov coveralls
+        - python3 -m pip install -U numpy==1.17.3 cython==0.29.14
+        - python3 -m pip install -r requirements.txt
+        - python3 setup.py sdist -d dist
+        - python3 setup.py --openmp build_ext --inplace
+        - python3 -m pytest --cov gstools --cov-report term-missing -v tests/
+        - python3 -m coveralls
 
     - name: "Linux py35"
-      sudo: required
-      language: python
-      python: 3.5
       services: docker
-      env:
-        - PIP=pip
-        - CIBW_BUILD="cp35-*"
-        - COVER="off"
-
-    # py36 for coverage and sdist
+      env: CIBW_BUILD="cp35-*"
     - name: "Linux py36"
-      sudo: required
-      language: python
-      python: 3.6
       services: docker
-      env:
-        - PIP=pip
-        - CIBW_BUILD="cp36-*"
-        - COVER="on"
-
-    # https://github.com/travis-ci/travis-ci/issues/9815
+      env: CIBW_BUILD="cp36-*"
     - name: "Linux py37"
-      sudo: required
-      language: python
-      python: 3.7
-      dist: xenial
       services: docker
-      env:
-        - PIP=pip
-        - CIBW_BUILD="cp37-*"
-        - COVER="off"
-
-    - name: "MacOS py27"
-      os: osx
-      language: generic
-      env:
-        - PIP=pip2
-        - CIBW_BUILD="cp27-*"
-        - COVER="off"
-
-    - name: "MacOS py34"
-      os: osx
-      language: generic
-      env:
-        - PIP=pip2
-        - CIBW_BUILD="cp34-*"
-        - COVER="off"
+      env: CIBW_BUILD="cp37-*"
+    - name: "Linux py38"
+      services: docker
+      env: CIBW_BUILD="cp38-*"
 
     - name: "MacOS py35"
       os: osx
-      language: generic
-      env:
-        - PIP=pip2
-        - CIBW_BUILD="cp35-*"
-        - COVER="off"
-
+      language: shell
+      env: CIBW_BUILD="cp35-*"
     - name: "MacOS py36"
       os: osx
-      language: generic
-      env:
-        - PIP=pip2
-        - CIBW_BUILD="cp36-*"
-        - COVER="off"
-
+      language: shell
+      env: CIBW_BUILD="cp36-*"
     - name: "MacOS py37"
       os: osx
-      language: generic
-      env:
-        - PIP=pip2
-        - CIBW_BUILD="cp37-*"
-        - COVER="off"
-
-env:
-  global:
-    - TWINE_USERNAME=geostatframework
-    - CIBW_BEFORE_BUILD="pip install numpy==1.14.5 cython==0.28.3"
-    - CIBW_TEST_REQUIRES=pytest-cov
-    # inplace cython build and test run
-    - CIBW_TEST_COMMAND="cd {project} && python setup.py build_ext --inplace && py.test --cov gstools --cov-report term-missing -v {project}/tests"
-
-script:
-  # create wheels
-  - $PIP install cibuildwheel==0.11.1
-  - cibuildwheel --output-dir wheelhouse
-  # create source dist for pypi and create coverage (only once for linux py3.6)
-  - |
-    if [[ $COVER == "on" ]]; then
-      rm -rf dist
-      python -m pip install -U numpy==1.14.5 cython==0.28.3 setuptools
-      python -m pip install pytest-cov coveralls
-      python -m pip install -r docs/requirements.txt
-      python setup.py sdist
-      python setup.py build_ext --inplace
-      python -m pytest --cov gstools --cov-report term-missing -v tests/
-      python -m coveralls
-    fi
-
-after_success:
-  # pypi upload ("test" allways and "official" on TAG)
-  - python -m pip install twine
-  - python -m twine upload --verbose --skip-existing --repository-url https://test.pypi.org/legacy/ wheelhouse/*.whl
-  - python -m twine upload --verbose --skip-existing --repository-url https://test.pypi.org/legacy/ dist/*.tar.gz
-  - |
-    if [[ $TRAVIS_TAG ]]; then
-      python -m twine upload --verbose --skip-existing wheelhouse/*.whl
-      python -m twine upload --verbose --skip-existing dist/*.tar.gz
-    fi
+      language: shell
+      env: CIBW_BUILD="cp37-*"
+    - name: "MacOS py38"
+      os: osx
+      language: shell
+      env: CIBW_BUILD="cp38-*"
 
-notifications:
-  email:
-    recipients:
-    - info@geostat-framework.org
+    - name: "Win py35"
+      os: windows
+      language: shell
+      env: CIBW_BUILD="cp35-*"
+    - name: "Win py36"
+      os: windows
+      language: shell
+      env: CIBW_BUILD="cp36-*"
+    - name: "Win py37"
+      os: windows
+      language: shell
+      env: CIBW_BUILD="cp37-*"
+    - name: "Win py38"
+      os: windows
+      language: shell
+      env: CIBW_BUILD="cp38-*"

.zenodo.json

@@ -0,0 +1,49 @@
+{
+    "license": "LGPL-3.0+",
+    "contributors": [
+        {
+            "type": "Other",
+            "name": "Bane Sullivan"
+        },
+        {
+            "orcid": "0000-0002-2547-8102",
+            "affiliation": "Helmholtz Centre for Environmental Research - UFZ",
+            "type": "ResearchGroup",
+            "name": "Falk He\u00dfe"
+        },
+        {
+            "orcid": "0000-0002-8783-6198",
+            "affiliation": "Hydrogeology Group, Department of Earth Science, Utrecht University, Netherlands",
+            "type": "ResearchGroup",
+            "name": "Alraune Zech"
+        },
+        {
+            "orcid": "0000-0002-7798-7080",
+            "affiliation": "Helmholtz Centre for Environmental Research - UFZ",
+            "type": "Supervisor",
+            "name": "Sabine Attinger"
+        }
+    ],
+    "language": "eng",
+    "keywords": [
+        "geostatistics",
+        "kriging",
+        "random fields",
+        "covariance models",
+        "variogram",
+        "Python",
+        "GeoStat-Framework"
+    ],
+    "creators": [
+        {
+            "orcid": "0000-0001-9060-4008",
+            "affiliation": "Helmholtz Centre for Environmental Research - UFZ",
+            "name": "Sebastian M\u00fcller"
+        },
+        {
+            "orcid": "0000-0001-9362-1372",
+            "affiliation": "Helmholtz Centre for Environmental Research - UFZ",
+            "name": "Lennart Sch\u00fcler"
+        }
+    ]
+}

CHANGELOG.md

@@ -3,13 +3,30 @@
 All notable changes to **GSTools** will be documented in this file.
 
 
-## [Unreleased]
+## [1.2.0] - Volatile Violet - 2020-03-20
 
 ### Enhancements
+- different variogram estimator functions can now be used #51
+- the TPLGaussian and TPLExponential now have analytical spectra #67
+- added property ``is_isotropic`` to CovModel #67
+- reworked the whole krige sub-module to provide multiple kriging methods #67
+  - Simple
+  - Ordinary
+  - Universal
+  - External Drift Kriging
+  - Detrended Kriging
+- a new transformation function for discrete fields has been added #70
+- reworked tutorial section in the documentation #63
+- pyvista interface #29
 
 ### Changes
+- Python versions 2.7 and 3.4 are no longer supported #40 #43
+- CovModel: in 3D the input of anisotropy is now treated slightly different: #67
+  - single given anisotropy value [e] is converted to [1, e] (it was [e, e] before)
+  - two given length-scales [l_1, l_2] are converted to [l_1, l_2, l_2] (it was [l_1, l_2, l_1] before)
 
 ### Bugfixes
+- a race condition in the structured variogram estimation has been fixed #51
 
 
 ## [1.1.1] - Reverberating Red - 2019-11-08
@@ -97,7 +114,8 @@ All notable changes to **GSTools** will be documented in this file.
 First release of GSTools.
 
 
-[Unreleased]: https://github.com/GeoStat-Framework/gstools/compare/v1.1.1...HEAD
+[Unreleased]: https://github.com/GeoStat-Framework/gstools/compare/v1.2.0...HEAD
+[1.2.0]: https://github.com/GeoStat-Framework/gstools/compare/v1.1.1...v1.2.0
 [1.1.1]: https://github.com/GeoStat-Framework/gstools/compare/v1.1.0...v1.1.1
 [1.1.0]: https://github.com/GeoStat-Framework/gstools/compare/v1.0.1...v1.1.0
 [1.0.1]: https://github.com/GeoStat-Framework/gstools/compare/v1.0.0...v1.0.1

CONTRIBUTING.md

@@ -23,12 +23,14 @@ print(gstools.__version__)
 
 Open a [new issue](https://github.com/GeoStat-Framework/GSTools/issues)
 with your idea or suggestion and we'd love to discuss about it.
- 
+
 
 ## Do you want to enhance GSTools or fix something?
 
 - Fork the repo on [GitHub](https://github.com/GeoStat-Framework/GSTools) from the [develop branch](https://github.com/GeoStat-Framework/GSTools/tree/develop).
 - Add yourself to AUTHORS.md (if you want to).
 - We use the black code format, please use the script `black --line-length 79 gstools/` after you have written your code.
 - Add some tests if possible.
+- Add an example showing your new feature in one of the examples sub-folders if possible.
+  Follow this [Sphinx-Gallary guide](https://sphinx-gallery.github.io/stable/syntax.html#embed-rst-in-your-example-python-files)
 - Push to your fork and submit a pull request.