Fix indexing in _mapreducedim for OffsetArrays #55506
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jishnub
added
arrays
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Bump |
mbauman
reviewed
Aug 22, 2024
Co-authored-by: Matt Bauman <mbauman@juliahub.com>
mbauman
approved these changes
Aug 22, 2024
KristofferC
added a commit
that referenced
this pull request
Aug 26, 2024
Backported PRs: - [x] #54962 <!-- Add timing to precompile trace compile --> - [x] #55180 <!-- compress jit debuginfo for easy memory savings --> - [x] #54919 <!-- Fix annotated join with non-concrete eltype iters --> - [x] #55013 <!-- [docs] change docstring to match code --> - [x] #55017 <!-- TOML: Make `Dates` a type parameter --> - [x] #54033 <!-- Fix a bug in `stack`'s DimensionMismatch error message --> - [x] #55242 <!-- fix at-main docstring to not code quote a compat box --> - [x] #55261 <!-- Make `jl_*affinity` tests more portable --> - [x] #54736 <!-- specificity: ensure fast-path in `sub/eq_msp` handle missing `UnionAll` wrapper correctly. --> - [x] #55299 <!-- typeintersect: fix bounds merging during inner `intersect_all`. --> - [x] #55302 <!-- Add `lbt_forwarded_funcs()` to debug LBT forwarding issues --> - [x] #55148 <!-- Random: Mark unexported public symbols as public --> - [x] #55303 <!-- avoid overflowing show for OffsetArrays around typemax --> - [x] #55317 <!-- Restrict argument to `isleapyear(::Integer)` --> - [x] #55327 <!-- Profile: Fix stdlib paths --> - [x] #55330 <!-- [libblastrampoline] Bump to v5.11.0 --> - [x] #55310 <!-- Preserve structure in scaling triangular matrices by NaN --> - [x] #55329 <!-- mapreduce: don't inbounds unknown functions --> - [x] #55356 <!-- Profile: close files when assembling heap snapshot --> - [x] #55371 <!-- Fix tr for block SymTridiagonal --> - [x] #55307 <!-- Make REPL.TerminalMenus public --> - [x] #55362 <!-- inference: fix missing LimitedAccuracy markers --> - [x] #55306 <!-- AllocOpt: Fix stack lowering where alloca continas boxed and unboxed data --> - [x] #55395 <!-- fix #55389: type-unstable `join` --> - [x] #55226 <!-- re-add `unsafe_convert` for Reinterpret and Reshaped array --> - [x] #55405 <!-- handle unbound vars in NTuple fields --> - [x] #55365 <!-- ml-matches: ensure all methods are included --> - [x] #55428 <!-- codegen: move undef freeze before promotion point --> - [x] #55419 <!-- `stale_cachefile`: handle if the expected cache file is missing --> - [x] #55470 <!-- Add push! implementation for AbstractArray depending only on resize! --> - [x] #55483 <!-- fix hierarchy level of "API reference" in `Dates` documentation --> - [x] #55268 <!-- simplify complex atanh and remove singularity perturbation --> - [x] #55441 <!-- fix Event to use normal Condition variable --> - [x] #55413 <!-- subtyping: fast path for lhs union and rhs typevar --> - [x] #55492 <!-- build: add missing dependencies for expmap --> - [x] #55507 <!-- Fix fast getptls ccall lowering. --> - [x] #55424 <!-- add missing clamp function for IOBuffer --> - [x] #55504 <!-- Update symmetric docstring to reflect the type of uplo --> - [x] #55107 <!-- Make the memory GEP an inbounds GEP since the bounds check has happened somewhere else --> - [x] #55411 <!-- Vendor the terminfo database for use with base/terminfo.jl --> - [x] #55452 <!-- Do not load `ScopedValues` with `using` --> - [x] #55407 <!-- Remove deprecated non string API for LLVM pass pipeline and parse all options --> - [x] #55461 <!-- 🤖 [master] Bump the StyledStrings stdlib from d7496d2 to f6035eb --> - [x] #55433 <!-- Backport #55407 to 1.11 --> - [x] #55225 <!-- [1.11 backport] trace-compile: don't generate `precompile` statements for OpaqueClosure methods (#55072) --> - [x] #55212 <!-- Make `Base.depwarn()` public --> - [x] #552 - [x] #55052 <!-- Fix `(l/r)mul!` with `Diagonal`/`Bidiagonal` --> - [x] #55251 <!-- Restrict binary ops for Diagonal and Symmetric to Number eltypes -->95 <!-- LAPACK: Aggressive constprop to concretely infer syev!/syevd! --> - [x] #55522 <!-- Fix tr for Symmetric/Hermitian block matrices --> Need manual backport: - [x] #55342 <!-- Ensure bidiagonal setindex! does not read indices in error message --> Contains multiple commits, manual intervention needed: - [ ] #55336 <!-- codegen: take gc roots (and alloca alignment) more seriously --> Non-merged PRs with backport label: - [ ] #55506 <!-- Fix indexing in _mapreducedim for OffsetArrays --> - [ ] #55500 <!-- make jl_thread_suspend_and_get_state safe --> - [ ] #55499 <!-- propagate the terminal's `displaysize` to the `IOContext` used by the REPL --> - [ ] #55458 <!-- Allow for generically extracting unannotated string --> - [ ] #55457 <!-- Make AnnotateChar equality consider annotations --> - [ ] #55453 <!-- Privatise the annotations API, for StyledStrings --> - [ ] #55443 <!-- Add test for upper/lower/titlecase and fix call --> - [ ] #55355 <!-- relocation: account for trailing path separator in depot paths --> - [ ] #55220 <!-- `isfile_casesensitive` fixes on Windows --> - [ ] #55169 <!-- `propertynames` for SVD respects private argument --> - [ ] #54457 <!-- Make `String(::Memory)` copy --> - [ ] #53957 <!-- tweak how filtering is done for what packages should be precompiled --> - [ ] #51479 <!-- prevent code loading from lookin in the versioned environment when building Julia --> - [ ] #50813 <!-- More doctests for Sockets and capitalization fix --> - [ ] #50157 <!-- improve docs for `@inbounds` and `Base.@propagate_inbounds` --> - [ ] #41244 <!-- Fix shell `cd` error when working dir has been deleted -->
KristofferC
pushed a commit
that referenced
this pull request
Aug 26, 2024
The destination array was being indexed incorrectly if it had offset
indices. This led to the following on nightly:
```julia
julia> using OffsetArrays
julia> r = 5:100;
julia> a = OffsetVector(r, 2);
julia> sum(a, dims=1)
1-element OffsetArray(::Vector{Int64}, 3:3) with eltype Int64 with indices 3:3:
0
julia> sum(a)
5040
```
The indexing was marked `@inbounds`, so this was not throwing an error.
This PR also follows #55329 and only marks the indexing operations as
`@inbounds`, omitting the function calls.
---------
Co-authored-by: Matt Bauman <mbauman@juliahub.com>
(cherry picked from commit 3d20a92)
33 tasks
KristofferC
pushed a commit
that referenced
this pull request
Sep 12, 2024
The destination array was being indexed incorrectly if it had offset
indices. This led to the following on nightly:
```julia
julia> using OffsetArrays
julia> r = 5:100;
julia> a = OffsetVector(r, 2);
julia> sum(a, dims=1)
1-element OffsetArray(::Vector{Int64}, 3:3) with eltype Int64 with indices 3:3:
0
julia> sum(a)
5040
```
The indexing was marked `@inbounds`, so this was not throwing an error.
This PR also follows #55329 and only marks the indexing operations as
`@inbounds`, omitting the function calls.
---------
Co-authored-by: Matt Bauman <mbauman@juliahub.com>
KristofferC
added a commit
that referenced
this pull request
Sep 17, 2024
Backported PRs: - [x] #55480 <!-- Fix push! for OffsetVectors, add tests for push! and append! on AbstractVector --> - [x] #55443 <!-- Add test for upper/lower/titlecase and fix call --> - [x] #55524 <!-- Set `.jl` sources as read-only during installation --> - [x] #55500 <!-- make jl_thread_suspend_and_get_state safe --> - [x] #55506 <!-- Fix indexing in _mapreducedim for OffsetArrays --> - [x] #55564 <!-- Empty out loaded_precompiles dict instead of asserting it's empty. --> - [x] #55567 <!-- Initialize threadpools correctly during sysimg build --> - [x] #55596 <!-- Fast bounds-check for CartesianIndex ranges --> - [x] #55605 <!-- Reroute Symmetric/Hermitian + Diagonal through triangular --> - [x] #55640 <!-- win: move stack_overflow_warning to the backtrace fiber --> - [x] #55715 <!-- Add precompile signatures to Markdown to reduce latency. --> - [x] #55593 <!-- Fix invalidations for FileIO --> - [x] #55555 <!-- Revert "Don't expose guard pages to malloc_stack API consumers" --> - [x] #55720 <!-- Fix `pkgdir` for extensions --> - [x] #55729 <!-- Avoid confounding compilation side effects of `@time_imports` --> - [x] #55718 <!-- Fix `@time_imports` extension recognition --> - [x] #55522 <!-- Fix tr for Symmetric/Hermitian block matrices --> Contains multiple commits, manual intervention needed: - [ ] #55509 <!-- Fix cong implementation to be properly random and not just cycling. --> Non-merged PRs with backport label: - [ ] #55641 <!-- fall back to slower stat filesize if optimized filesize fails --> - [ ] #55534 <!-- Set stdlib sources as read-only during installation --> - [ ] #55499 <!-- propagate the terminal's `displaysize` to the `IOContext` used by the REPL --> - [ ] #55458 <!-- Allow for generically extracting unannotated string --> - [ ] #55457 <!-- Make AnnotateChar equality consider annotations --> - [ ] #55453 <!-- Privatise the annotations API, for StyledStrings --> - [ ] #55355 <!-- relocation: account for trailing path separator in depot paths --> - [ ] #55220 <!-- `isfile_casesensitive` fixes on Windows --> - [ ] #55169 <!-- `propertynames` for SVD respects private argument --> - [ ] #54457 <!-- Make `String(::Memory)` copy --> - [ ] #53957 <!-- tweak how filtering is done for what packages should be precompiled --> - [ ] #51479 <!-- prevent code loading from lookin in the versioned environment when building Julia --> - [ ] #50813 <!-- More doctests for Sockets and capitalization fix --> - [ ] #50157 <!-- improve docs for `@inbounds` and `Base.@propagate_inbounds` --> - [ ] #41244 <!-- Fix shell `cd` error when working dir has been deleted -->
KristofferC
removed
the
backport 1.11
KristofferC
pushed a commit
that referenced
this pull request
Oct 9, 2024
The destination array was being indexed incorrectly if it had offset
indices. This led to the following on nightly:
```julia
julia> using OffsetArrays
julia> r = 5:100;
julia> a = OffsetVector(r, 2);
julia> sum(a, dims=1)
1-element OffsetArray(::Vector{Int64}, 3:3) with eltype Int64 with indices 3:3:
0
julia> sum(a)
5040
```
The indexing was marked `@inbounds`, so this was not throwing an error.
This PR also follows #55329 and only marks the indexing operations as
`@inbounds`, omitting the function calls.
---------
Co-authored-by: Matt Bauman <mbauman@juliahub.com>
(cherry picked from commit 3d20a92)
KristofferC
added a commit
that referenced
this pull request
Oct 22, 2024
Backported PRs: - [x] #51755 <!-- ASAN fixes. --> - [x] #55329 <!-- mapreduce: don't inbounds unknown functions --> - [x] #55365 <!-- ml-matches: ensure all methods are included --> - [x] #55483 <!-- fix hierarchy level of "API reference" in `Dates` documentation --> - [x] #55268 <!-- simplify complex atanh and remove singularity perturbation --> - [x] #55504 <!-- Update symmetric docstring to reflect the type of uplo --> - [x] #55524 <!-- Set `.jl` sources as read-only during installation --> - [x] #41244 <!-- Fix shell `cd` error when working dir has been deleted --> - [x] #55829 <!-- [Dates] Make test more robust against non-UTC timezones --> - [x] #55641 <!-- fall back to slower stat filesize if optimized filesize fails --> - [x] #55849 <!-- Mmap: fix grow! for non file IOs --> - [x] #55945 <!-- Fix logic in `?` docstring example --> - [x] #55743 <!-- doc: heap snapshot viewing --> - [x] #56023 <!-- Sockets: Warn when local network access not granted. --> - [x] #54276 <!-- Fix solve for complex `Hermitian` with non-vanishing imaginary part on diagonal --> - [x] #54669 <!-- Improve error message in inplace transpose --> - [x] #55295 <!-- LAPACK: Aggressive constprop to concretely infer syev!/syevd! --> - [x] #55303 <!-- avoid overflowing show for OffsetArrays around typemax --> - [x] #55342 <!-- Ensure bidiagonal setindex! does not read indices in error message --> - [x] #55507 <!-- Fix fast getptls ccall lowering. --> - [x] #55522 <!-- Fix tr for Symmetric/Hermitian block matrices --> - [x] #55854 <!-- 🤖 [master] Bump the Downloads stdlib from 1061ecc to 89d3c7d --> - [x] #55863 <!-- Update TaskLocalRNG docstring according to #49110 --> - [x] #55567 <!-- Initialize threadpools correctly during sysimg build --> - [x] #55506 <!-- Fix indexing in _mapreducedim for OffsetArrays --> - [x] #54737 <!-- LazyString in interpolated error messages involving types -->
KristofferC
removed
the
backport 1.10
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The destination array was being indexed incorrectly if it had offset indices. This led to the following on nightly:
The indexing was marked
@inbounds, so this was not throwing an error. This PR also follows #55329 and only marks the indexing operations as@inbounds, omitting the function calls.