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GitHub Issue NOAA-EMC/GSI#120. merge GFS v16.1.1 DA changes into master #169

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merged 1 commit into from
Jun 10, 2021

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RussTreadon-NOAA
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This PR correctly merges GFS v16.1.1 DA changes from a forked snapshot of release/gfsda.v16.1.0_merge into the authoritative master. The changes in release/gfsda.v16.1.0_merge are documented in issue #120. Additional details are found in SCN21-52.

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Hi @RussTreadon-NOAA,

I have completed my review of these changes. There are a handful of minor issues with src/gsi/setupbend.f90 (replacing .le. and .gt. with symbols, adding proper precision to real values, and addressing an issue with indentation) and src/enkf/gridio_gfs.f90 (removal of commented out debug prints). The regression tests were ran and

  • global_C96_fv3aerorad_regression_results.txt
  • global_fv3_4denvar_C192_regression_results.txt
  • global_fv3_4denvar_T126_regression_results.txt

Failed due to reproducibility between NOAA-EMC/GSI master and the changes in this PR. I didn't see any reproducibility issues being indicated in issue #120. Do you see similar reproducibility failures?

The code was compiled and ran in debug mode and the code compiled without issue and the debug tests ran through to completion.

Please address the issues in the two files and double check to see if you are seeing reproducibility issues for the three configurations.

Thanks,

Mike

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@RussTreadon-NOAA
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RussTreadon-NOAA commented May 28, 2021 via email

@MichaelLueken
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Hi @RussTreadon-NOAA,

For updating the PR to ensure that there is only a single commit, please see Redmine's:

https://vlab.noaa.gov/redmine/projects/comgsi/wiki/How_to_make_modifications_once_you_have_pushed_your_changes_to_code_review

git commit --amend

will allow you to commit changes and not make additional commits. The only difference is that you will need to use:

git push origin master --force

to push changes back to repository.

Mike

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WCOSS_D Regression Tests

As Mike found, the following regression tests fail on WCOSS_D:

  • global_C96_fv3aerorad
  • global_fv3_4denvar_T126
  • global_fv3_4denvar_C192

Failure of the global_fv3_4denvar_C192 test is correct. This test writes netcdf analysis increment files. compare_ncfile.py of the updat and contrl siginc.nc files show differences in the delz increment. This is expected. PR #169 corrects an error in the sign of the delz increment in src/gsi/netcdfgfs_io.f90. This bug fix in not in the authoritative repo master.

Failures of the global_C96_fv3aerorad and global_fv3_4denvar_T126 tests are correct. Both cases use fv3 backgrounds in nemsio format. nemsio_read siganl shows variable delz differs between the updat and contrl global_gsi.x This is expected. PR #169 corrects an error in the sign of the delz increment in src/gsi/ncepnems_io.f90. This bug fix is not in the authoritative repo master.

As a test, the PR #169 change to src/gsi/ncepnems_io.f90 was reverted in a local working copy, global_gsi.x rebuilt, and the global_fv3_4denvar_T126 rerun. The global_fv3_4denvar_T126 test passed. The resulting siganl files are b4b identical with those generated by the authoritative repo master.

For additional information regarding the delz bug files, please see issue #117 and PR #116.

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One final comment, then this work will be ready for the review committee. On line 590, please remove the extra indentation (qcfail should align with the previous entries). Additionally, will there be anything for the above section of the if statement logic (line 591). If not, then should this line be removed as well?

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@MichaelLueken MichaelLueken linked an issue Jun 2, 2021 that may be closed by this pull request
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The due date for the review committee has past with no feedback. I will now give final approval to these changes and merge them to the authoritative repository.

@MichaelLueken MichaelLueken merged commit 51a6564 into NOAA-EMC:master Jun 10, 2021
AndrewEichmann-NOAA added a commit to AndrewEichmann-NOAA/GSI that referenced this pull request Jun 21, 2021
commit 67705a1
Merge: 5e53aaf 18afa96
Author: AndrewEichmann-NOAA <58948505+AndrewEichmann-NOAA@users.noreply.github.com>
Date:   Fri Jun 11 10:55:08 2021 -0400

    Merge branch 'NOAA-EMC:master' into master

commit 18afa96
Author: michael.lueken <Michael.Lueken@noaa.gov>
Date:   Thu Jun 10 11:57:29 2021 +0000

    master: Updated fix/rev2 use flags for CrIS NPP due to LW band anomalies (global_satinfo.txt and added gfsv16_historical/global_satinfo.txt.2021052118

commit 51a6564
Merge: 820ee80 d199ed5
Author: MichaelLueken-NOAA <63728921+MichaelLueken-NOAA@users.noreply.github.com>
Date:   Thu Jun 10 07:48:55 2021 -0400

    Merge pull request NOAA-EMC#169 from RussTreadon-NOAA/master

    GitHub Issue NOAA-EMC#120. Merge GFS v16.1.1 DA changes into master

commit d199ed5
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu May 27 19:08:39 2021 +0000

    GitHub Issue NOAA-EMC#120. merge GFS v16.1.1 DA changes into master

commit 820ee80
Merge: 6585234 86d4071
Author: MichaelLueken-NOAA <63728921+MichaelLueken-NOAA@users.noreply.github.com>
Date:   Fri May 28 11:34:46 2021 -0400

    Merge pull request NOAA-EMC#155 from AndrewEichmann-NOAA/EXP-efso_fv3_PR_util_EFSOI_src

    GitHub Issue NOAA-EMC#118.  EFSOI additions to util/EFSOI-Utilities/src directory.

commit 86d4071
Author: michael.lueken <Michael.Lueken@noaa.gov>
Date:   Fri May 28 15:31:10 2021 +0000

    GitHub Issue NOAA-EMC#118. Implement EFSOI process in FV3 GFS workflow - EFSOI-specific util source code.

commit 6585234
Merge: 6cec754 efaa7cf
Author: MichaelLueken-NOAA <63728921+MichaelLueken-NOAA@users.noreply.github.com>
Date:   Fri May 28 11:20:54 2021 -0400

    Merge pull request NOAA-EMC#166 from comgsi/prMaster

    GitHub Issue NOAA-EMC#167.  Change GSIWRFIO_LIB to WRF_IO_LIB and update build.comgsi accordingly.

commit efaa7cf
Author: Guoqing.Ge <guoqing.ge@noaa.gov>
Date:   Wed May 26 15:51:51 2021 -0600

    change GSIWRFIO_LIB to WRF_IO_LIB and update build.comgsi accordingly

commit 5e53aaf
Merge: e54683c 6cec754
Author: AndrewEichmann-NOAA <58948505+AndrewEichmann-NOAA@users.noreply.github.com>
Date:   Mon May 24 14:34:33 2021 -0400

    Merge branch 'NOAA-EMC:master' into master

commit 6cec754
Merge: 6a6ac4e 3cc26ec
Author: MichaelLueken-NOAA <63728921+MichaelLueken-NOAA@users.noreply.github.com>
Date:   Fri May 21 13:48:26 2021 -0400

    Merge pull request NOAA-EMC#147 from AndrewEichmann-NOAA/EXP-efso_fv3_PR_util_EFSOI_scripts

    GitHub Issue NOAA-EMC#118.  EFSOI additions to util/EFSOI-Utilities/scripts directory.

commit 6a6ac4e
Merge: 1162d92 62c884c
Author: MichaelLueken-NOAA <63728921+MichaelLueken-NOAA@users.noreply.github.com>
Date:   Thu May 20 11:03:36 2021 -0400

    Merge pull request NOAA-EMC#146 from AndrewEichmann-NOAA/EXP-efso_fv3_PR_jobs

    GitHub Issue NOAA-EMC#118.  EFSOI additions to jobs directory for issue.

commit 1162d92
Merge: 6e38b98 77a729e
Author: MichaelLueken-NOAA <63728921+MichaelLueken-NOAA@users.noreply.github.com>
Date:   Wed May 19 11:02:40 2021 -0400

    Merge pull request NOAA-EMC#157 from comgsi/tmpdtc

    GitHub Issue NOAA-EMC#158. Updates for community users to adopt the NOAA hpc-stack structure.

commit 6e38b98
Merge: b511ba0 00eb5da
Author: MichaelLueken-NOAA <63728921+MichaelLueken-NOAA@users.noreply.github.com>
Date:   Wed May 19 07:27:08 2021 -0400

    Merge pull request NOAA-EMC#164 from EdwardSafford-NOAA/master

    GitHub Issue NOAA-EMC#160.  Correct data file location problem.

commit 00eb5da
Author: Edward.Safford <edward.safford@noaa.gov>
Date:   Tue May 18 16:31:34 2021 +0000

    GitHub Issue NOAA-EMC#160.  Correct data file location problem.

commit b511ba0
Author: michael.lueken <Michael.Lueken@noaa.gov>
Date:   Tue May 18 14:38:15 2021 +0000

    GitHub Issue NOAA-EMC#126. Update global_convinfo.txt and prepobs_errtable.global for high resolution Raob data.

commit 66db434
Merge: dcb735a 23ec8ef
Author: MichaelLueken-NOAA <63728921+MichaelLueken-NOAA@users.noreply.github.com>
Date:   Tue May 18 10:06:16 2021 -0400

    Merge pull request NOAA-EMC#149 from jderber-NOAA/master

    GitHub Issue NOAA-EMC#126.  Add use of high resolution Raob data.

commit 77a729e
Author: Guoqing.Ge <guoqing.ge@noaa.gov>
Date:   Fri May 14 11:15:32 2021 -0600

    GitHub Issue NOAA-EMC#158. Updates for community users to adopt the NOAA hpc-stack structure.

commit e54683c
Merge: f69c3c8 b31b851
Author: andrew.eichmann <andrew.eichmann@noaa.gov>
Date:   Thu May 13 14:39:23 2021 +0000

    Merge branch 'master' of github.com:AndrewEichmann-NOAA/GSI

commit f69c3c8
Merge: 1dc5f83 dcb735a
Author: andrew.eichmann <andrew.eichmann@noaa.gov>
Date:   Thu May 13 14:37:10 2021 +0000

    Merge branch 'master' of github.com:NOAA-EMC/GSI

commit 3cc26ec
Author: andrew.eichmann <andrew.eichmann@noaa.gov>
Date:   Thu May 13 14:28:03 2021 +0000

    GitHub Issue NOAA-EMC#118. Implement EFSOI process in FV3 GFS workflow - EFSOI additions to util/EFSOI-Utilities/scripts directory.

commit 62c884c
Author: Michael Lueken <michael.lueken@noaa.gov>
Date:   Tue May 11 14:31:14 2021 +0000

    GitHub Issue NOAA-EMC#118. Implement EFSOI process in FV3 GFS workflow - EFSOI-specific additions to jobs.

commit 23ec8ef
Author: john.derber <John.Derber@noaa.gov>
Date:   Mon Apr 26 19:29:18 2021 +0000

    GitHub Issue NOAA-EMC#126.  Add use of high resolution Raob data.

commit dcb735a
Merge: c502c92 7939d47
Author: MichaelLueken-NOAA <63728921+MichaelLueken-NOAA@users.noreply.github.com>
Date:   Mon May 3 12:57:43 2021 -0400

    Merge pull request NOAA-EMC#153 from lbi2018/master

    GitHub Issue NOAA-EMC#152.

commit b31b851
Author: andrew.eichmann <andrew.eichmann@noaa.gov>
Date:   Fri Apr 30 15:34:59 2021 +0000

    Should not have gone into master
    Revert "EFSOI-specific fortran source from branch EXP-efso_fv3 - GSI issue NOAA-EMC#118"

    This reverts commit c9b8221.

commit c9b8221
Author: andrew.eichmann <andrew.eichmann@noaa.gov>
Date:   Fri Apr 30 15:30:59 2021 +0000

    EFSOI-specific fortran source from branch EXP-efso_fv3 - GSI issue NOAA-EMC#118

commit 7939d47
Author: Li.Bi@noaa.gov <Li.Bi@noaa.gov>
Date:   Wed Apr 28 13:15:30 2021 +0000

    GitHub Issue NOAA-EMC#152. Update of modulefile.ProdGSI.wcoss_c and get_gefs_for_regional.f90 bug fixes.

commit c502c92
Merge: 39ed5fa 5d77565
Author: MichaelLueken-NOAA <63728921+MichaelLueken-NOAA@users.noreply.github.com>
Date:   Mon Apr 26 10:22:12 2021 -0400

    Merge pull request NOAA-EMC#151 from EdwardSafford-NOAA/master

    GitHub Issue NOAA-EMC#150.  Correct OznMon read diag issue.

commit 5d77565
Author: edward.safford <edward.safford@noaa.gov>
Date:   Fri Apr 23 19:42:54 2021 +0000

    GitHub Issue NOAA-EMC#150.  Correct OznMon read diag issue.

commit 39ed5fa
Merge: 02d5ce6 1e6fd61
Author: MichaelLueken-NOAA <63728921+MichaelLueken-NOAA@users.noreply.github.com>
Date:   Tue Apr 13 09:37:05 2021 -0400

    Merge pull request NOAA-EMC#144 from EdwardSafford-NOAA/master

    GitHub Issue NOAA-EMC#123. OznMon update and bugzilla fixes.

commit 1e6fd61
Author: Edward.Safford <edward.safford@noaa.gov>
Date:   Fri Apr 9 14:40:01 2021 +0000

    GitHub Issue NOAA-EMC#123. OznMon update and bugzilla fixes.

commit 1dc5f83
Author: andrew.eichmann <andrew.eichmann@noaa.gov>
Date:   Thu Apr 8 21:15:51 2021 +0000

    removing EFSOI source files until they are merged into GSI master upstream
AndrewEichmann-NOAA added a commit to AndrewEichmann-NOAA/GSI that referenced this pull request Jun 21, 2021
commit 67705a1
Merge: 5e53aaf 18afa96
Author: AndrewEichmann-NOAA <58948505+AndrewEichmann-NOAA@users.noreply.github.com>
Date:   Fri Jun 11 10:55:08 2021 -0400

    Merge branch 'NOAA-EMC:master' into master

commit 18afa96
Author: michael.lueken <Michael.Lueken@noaa.gov>
Date:   Thu Jun 10 11:57:29 2021 +0000

    master: Updated fix/rev2 use flags for CrIS NPP due to LW band anomalies (global_satinfo.txt and added gfsv16_historical/global_satinfo.txt.2021052118

commit 51a6564
Merge: 820ee80 d199ed5
Author: MichaelLueken-NOAA <63728921+MichaelLueken-NOAA@users.noreply.github.com>
Date:   Thu Jun 10 07:48:55 2021 -0400

    Merge pull request NOAA-EMC#169 from RussTreadon-NOAA/master

    GitHub Issue NOAA-EMC#120. Merge GFS v16.1.1 DA changes into master

commit d199ed5
Author: russ.treadon <Russ.Treadon@noaa.gov>
Date:   Thu May 27 19:08:39 2021 +0000

    GitHub Issue NOAA-EMC#120. merge GFS v16.1.1 DA changes into master

commit 820ee80
Merge: 6585234 86d4071
Author: MichaelLueken-NOAA <63728921+MichaelLueken-NOAA@users.noreply.github.com>
Date:   Fri May 28 11:34:46 2021 -0400

    Merge pull request NOAA-EMC#155 from AndrewEichmann-NOAA/EXP-efso_fv3_PR_util_EFSOI_src

    GitHub Issue NOAA-EMC#118.  EFSOI additions to util/EFSOI-Utilities/src directory.

commit 86d4071
Author: michael.lueken <Michael.Lueken@noaa.gov>
Date:   Fri May 28 15:31:10 2021 +0000

    GitHub Issue NOAA-EMC#118. Implement EFSOI process in FV3 GFS workflow - EFSOI-specific util source code.

commit 6585234
Merge: 6cec754 efaa7cf
Author: MichaelLueken-NOAA <63728921+MichaelLueken-NOAA@users.noreply.github.com>
Date:   Fri May 28 11:20:54 2021 -0400

    Merge pull request NOAA-EMC#166 from comgsi/prMaster

    GitHub Issue NOAA-EMC#167.  Change GSIWRFIO_LIB to WRF_IO_LIB and update build.comgsi accordingly.

commit efaa7cf
Author: Guoqing.Ge <guoqing.ge@noaa.gov>
Date:   Wed May 26 15:51:51 2021 -0600

    change GSIWRFIO_LIB to WRF_IO_LIB and update build.comgsi accordingly

commit 5e53aaf
Merge: e54683c 6cec754
Author: AndrewEichmann-NOAA <58948505+AndrewEichmann-NOAA@users.noreply.github.com>
Date:   Mon May 24 14:34:33 2021 -0400

    Merge branch 'NOAA-EMC:master' into master

commit 6cec754
Merge: 6a6ac4e 3cc26ec
Author: MichaelLueken-NOAA <63728921+MichaelLueken-NOAA@users.noreply.github.com>
Date:   Fri May 21 13:48:26 2021 -0400

    Merge pull request NOAA-EMC#147 from AndrewEichmann-NOAA/EXP-efso_fv3_PR_util_EFSOI_scripts

    GitHub Issue NOAA-EMC#118.  EFSOI additions to util/EFSOI-Utilities/scripts directory.

commit 6a6ac4e
Merge: 1162d92 62c884c
Author: MichaelLueken-NOAA <63728921+MichaelLueken-NOAA@users.noreply.github.com>
Date:   Thu May 20 11:03:36 2021 -0400

    Merge pull request NOAA-EMC#146 from AndrewEichmann-NOAA/EXP-efso_fv3_PR_jobs

    GitHub Issue NOAA-EMC#118.  EFSOI additions to jobs directory for issue.

commit 1162d92
Merge: 6e38b98 77a729e
Author: MichaelLueken-NOAA <63728921+MichaelLueken-NOAA@users.noreply.github.com>
Date:   Wed May 19 11:02:40 2021 -0400

    Merge pull request NOAA-EMC#157 from comgsi/tmpdtc

    GitHub Issue NOAA-EMC#158. Updates for community users to adopt the NOAA hpc-stack structure.

commit 6e38b98
Merge: b511ba0 00eb5da
Author: MichaelLueken-NOAA <63728921+MichaelLueken-NOAA@users.noreply.github.com>
Date:   Wed May 19 07:27:08 2021 -0400

    Merge pull request NOAA-EMC#164 from EdwardSafford-NOAA/master

    GitHub Issue NOAA-EMC#160.  Correct data file location problem.

commit 00eb5da
Author: Edward.Safford <edward.safford@noaa.gov>
Date:   Tue May 18 16:31:34 2021 +0000

    GitHub Issue NOAA-EMC#160.  Correct data file location problem.

commit b511ba0
Author: michael.lueken <Michael.Lueken@noaa.gov>
Date:   Tue May 18 14:38:15 2021 +0000

    GitHub Issue NOAA-EMC#126. Update global_convinfo.txt and prepobs_errtable.global for high resolution Raob data.

commit 66db434
Merge: dcb735a 23ec8ef
Author: MichaelLueken-NOAA <63728921+MichaelLueken-NOAA@users.noreply.github.com>
Date:   Tue May 18 10:06:16 2021 -0400

    Merge pull request NOAA-EMC#149 from jderber-NOAA/master

    GitHub Issue NOAA-EMC#126.  Add use of high resolution Raob data.

commit 77a729e
Author: Guoqing.Ge <guoqing.ge@noaa.gov>
Date:   Fri May 14 11:15:32 2021 -0600

    GitHub Issue NOAA-EMC#158. Updates for community users to adopt the NOAA hpc-stack structure.

commit e54683c
Merge: f69c3c8 b31b851
Author: andrew.eichmann <andrew.eichmann@noaa.gov>
Date:   Thu May 13 14:39:23 2021 +0000

    Merge branch 'master' of github.com:AndrewEichmann-NOAA/GSI

commit f69c3c8
Merge: 1dc5f83 dcb735a
Author: andrew.eichmann <andrew.eichmann@noaa.gov>
Date:   Thu May 13 14:37:10 2021 +0000

    Merge branch 'master' of github.com:NOAA-EMC/GSI

commit 3cc26ec
Author: andrew.eichmann <andrew.eichmann@noaa.gov>
Date:   Thu May 13 14:28:03 2021 +0000

    GitHub Issue NOAA-EMC#118. Implement EFSOI process in FV3 GFS workflow - EFSOI additions to util/EFSOI-Utilities/scripts directory.

commit 62c884c
Author: Michael Lueken <michael.lueken@noaa.gov>
Date:   Tue May 11 14:31:14 2021 +0000

    GitHub Issue NOAA-EMC#118. Implement EFSOI process in FV3 GFS workflow - EFSOI-specific additions to jobs.

commit 23ec8ef
Author: john.derber <John.Derber@noaa.gov>
Date:   Mon Apr 26 19:29:18 2021 +0000

    GitHub Issue NOAA-EMC#126.  Add use of high resolution Raob data.

commit dcb735a
Merge: c502c92 7939d47
Author: MichaelLueken-NOAA <63728921+MichaelLueken-NOAA@users.noreply.github.com>
Date:   Mon May 3 12:57:43 2021 -0400

    Merge pull request NOAA-EMC#153 from lbi2018/master

    GitHub Issue NOAA-EMC#152.

commit b31b851
Author: andrew.eichmann <andrew.eichmann@noaa.gov>
Date:   Fri Apr 30 15:34:59 2021 +0000

    Should not have gone into master
    Revert "EFSOI-specific fortran source from branch EXP-efso_fv3 - GSI issue NOAA-EMC#118"

    This reverts commit c9b8221.

commit c9b8221
Author: andrew.eichmann <andrew.eichmann@noaa.gov>
Date:   Fri Apr 30 15:30:59 2021 +0000

    EFSOI-specific fortran source from branch EXP-efso_fv3 - GSI issue NOAA-EMC#118

commit 7939d47
Author: Li.Bi@noaa.gov <Li.Bi@noaa.gov>
Date:   Wed Apr 28 13:15:30 2021 +0000

    GitHub Issue NOAA-EMC#152. Update of modulefile.ProdGSI.wcoss_c and get_gefs_for_regional.f90 bug fixes.

commit c502c92
Merge: 39ed5fa 5d77565
Author: MichaelLueken-NOAA <63728921+MichaelLueken-NOAA@users.noreply.github.com>
Date:   Mon Apr 26 10:22:12 2021 -0400

    Merge pull request NOAA-EMC#151 from EdwardSafford-NOAA/master

    GitHub Issue NOAA-EMC#150.  Correct OznMon read diag issue.

commit 5d77565
Author: edward.safford <edward.safford@noaa.gov>
Date:   Fri Apr 23 19:42:54 2021 +0000

    GitHub Issue NOAA-EMC#150.  Correct OznMon read diag issue.

commit 39ed5fa
Merge: 02d5ce6 1e6fd61
Author: MichaelLueken-NOAA <63728921+MichaelLueken-NOAA@users.noreply.github.com>
Date:   Tue Apr 13 09:37:05 2021 -0400

    Merge pull request NOAA-EMC#144 from EdwardSafford-NOAA/master

    GitHub Issue NOAA-EMC#123. OznMon update and bugzilla fixes.

commit 1e6fd61
Author: Edward.Safford <edward.safford@noaa.gov>
Date:   Fri Apr 9 14:40:01 2021 +0000

    GitHub Issue NOAA-EMC#123. OznMon update and bugzilla fixes.

commit 1dc5f83
Author: andrew.eichmann <andrew.eichmann@noaa.gov>
Date:   Thu Apr 8 21:15:51 2021 +0000

    removing EFSOI source files until they are merged into GSI master upstream
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DA Changes for GFS v16.1
2 participants