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merge master #395

Merged
merged 488 commits into from
Mar 31, 2022
Merged

merge master #395

merged 488 commits into from
Mar 31, 2022

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Nic-Ma
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@Nic-Ma Nic-Ma commented Mar 31, 2022

Fixes # .

Description

A few sentences describing the changes proposed in this pull request.

Status

Ready/Work in progress/Hold

Types of changes

  • Non-breaking change (fix or new feature that would not break existing functionality).
  • Breaking change (fix or new feature that would cause existing functionality to change).
  • New tests added to cover the changes.
  • Integration tests passed locally by running ./runtests.sh -f -u --net --coverage.
  • Quick tests passed locally by running ./runtests.sh --quick --unittests.
  • In-line docstrings updated.
  • Documentation updated, tested make html command in the docs/ folder.

Nic-Ma and others added 30 commits December 7, 2021 08:47
@Nic-Ma @monai-bot
Add base class for workflows (#3445)
8a47227 
* [DLMED] add BaseWorkflow

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] fix typo

Signed-off-by: Nic Ma <nma@nvidia.com>

* [MONAI] python code formatting

Signed-off-by: monai-bot <monai.miccai2019@gmail.com>

* [DLMED] add *args, **kwargs

Signed-off-by: Nic Ma <nma@nvidia.com>

Co-authored-by: monai-bot <monai.miccai2019@gmail.com>
@Nic-Ma @monai-bot
Enhance deprecated arg for kwargs in CSV datasets (#3446)
a17813b 
* [DLMED] fix deprecated arg

Signed-off-by: Nic Ma <nma@nvidia.com>

* [MONAI] python code formatting

Signed-off-by: monai-bot <monai.miccai2019@gmail.com>

Co-authored-by: monai-bot <monai.miccai2019@gmail.com>
@yiheng-wang-nv
3293 Remove extra deep supervision modules of DynUNet (#3427)
98c1c43 
* enhance dynunet

Signed-off-by: Yiheng Wang <vennw@nvidia.com>

* fix black issue

Signed-off-by: Yiheng Wang <vennw@nvidia.com>

* use strict=False

Signed-off-by: Yiheng Wang <vennw@nvidia.com>

* fix black 21.12 error

Signed-off-by: Yiheng Wang <vennw@nvidia.com>

* enhance code and update docstring

Signed-off-by: Yiheng Wang <vennw@nvidia.com>
@wyli
471- fixes deprecated args (#3447)
29e9ab3 
* fixes deprecated args

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* update based on comments

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
@rijobro
improve error message if reader nott available (#3457)
a7bc4a3 
improve error message if reader nott available
@wyli
adds the missing imports (#3462)
d2543ad 
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
@wyli
revise MILModel docstring (#3459)
82576e7 
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
@wyli
deprecate reduction (#3464)
4b5ad0b 
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
@Nic-Ma @monai-bot
3444 Add DatasetFunc (#3456)
5b36d02 
* [DLMED] add dataset generator

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] add DatasetGenerator

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] update according to comments

Signed-off-by: Nic Ma <nma@nvidia.com>

* [MONAI] python code formatting

Signed-off-by: monai-bot <monai.miccai2019@gmail.com>

* [DLMED] fix wrong test

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] simplify according to comments

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] remove return

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] update rtol for CI

Signed-off-by: Nic Ma <nma@nvidia.com>

Co-authored-by: monai-bot <monai.miccai2019@gmail.com>
@Nic-Ma
Add missing components to API doc (#3468)
89f0bd4 
* [DLMED] add missing docs

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] add missing components

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] fix test

Signed-off-by: Nic Ma <nma@nvidia.com>
@Nic-Ma @monai-bot
3466 3467 Add channel_wise and correct doc-string (#3469)
d386213 
* [DLMED] add channel-wise

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] update according to comments

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] fix typo

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] skip test if before 1.7

Signed-off-by: Nic Ma <nma@nvidia.com>

* [MONAI] python code formatting

Signed-off-by: monai-bot <monai.miccai2019@gmail.com>

Co-authored-by: monai-bot <monai.miccai2019@gmail.com>
@Nic-Ma
[DLMED] remove cls (#3475)
a4c1300 
Signed-off-by: Nic Ma <nma@nvidia.com>
@Nic-Ma
Add Iteration base class (#3472)
360c52f 
* [DLMED] add Iteration base class

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] update according to comments

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] update according to comments

Signed-off-by: Nic Ma <nma@nvidia.com>
@yiheng-wang-nv
fix link error (#3488)
cb70e13 
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
@Nic-Ma
3465 Support string as dtype (#3478)
9ef0070 
* [DLMED] support string dtype

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] fix typo

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] enhance dtype in ToCupy

Signed-off-by: Nic Ma <nma@nvidia.com>
@Nic-Ma @wyli
Add Iteration base class (#3472)
2cbb54c 
* [DLMED] add Iteration base class

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] update according to comments

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] update according to comments

Signed-off-by: Nic Ma <nma@nvidia.com>
@yiheng-wang-nv @wyli
fix link error (#3488)
45af170 
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
@Nic-Ma @wyli
3465 Support string as dtype (#3478)
9ccc5ee 
* [DLMED] support string dtype

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] fix typo

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] enhance dtype in ToCupy

Signed-off-by: Nic Ma <nma@nvidia.com>
@Nic-Ma
[DLMED] update to 0.4.7 (#3483)
7a66f18 
Signed-off-by: Nic Ma <nma@nvidia.com>
@bhashemian
Improve NVTX Range Naming (#3484)
f6648a3 
* Update to not include number for the name of the first range

Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com>

* Update CuCIM and TorchVision wrappers to include name

Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com>

* Update nvtx range to append undelying class for wrapper tranforms

Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com>

* Add new test cases to cover changes

Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com>

* Update cucim and torchvision check

Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com>
@Nic-Ma
3471 3491 Add example images for intensity transforms (#3494)
9927691 
* [DLMED] add missing images

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] fix 3471

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] fix AsDiscrete

Signed-off-by: Nic Ma <nma@nvidia.com>
@ebrahimebrahim
Make bending energy loss invariant to resolution (#3493)
88d91d6 
* make bending energy loss invariant to resolution

fixes #3485

Signed-off-by: Ebrahim Ebrahim <ebrahim.ebrahim@kitware.com>

* set BendingEnergyLoss default normalize to False

Maybe it's more important that the default behavior match usage of the
term "bending energy" elsewhere, rather than that it be the most
convenient behavior.

Signed-off-by: Ebrahim Ebrahim <ebrahim.ebrahim@kitware.com>
@wyli
Removes redundant casting -- ensure tuple (#3495)
3761ee0 
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
@Nic-Ma
3498 Correct kwargs arg for convert_to_torchscript (#3499)
a255648 
* [DLMED] correct kwargs

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] fix grammar

Signed-off-by: Nic Ma <nma@nvidia.com>
@wyli
update tests with 1.10.1 (#3500)
531c276 
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
@Nic-Ma
3501 Add dict version SavitzkyGolaySmoothd (#3502)
d663d78 
* [DLMED] add SavitzkyGolaySmoothd

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] fix typo

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] update according to comments

Signed-off-by: Nic Ma <nma@nvidia.com>
@wyli
remove file (#3507)
d2861a2 
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
@wyli
avoid 60.0.0 (#3514)
29779d1 
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
@Nic-Ma
[DLMED] add 6 new transform images (#3512)
c9d38f0 
Signed-off-by: Nic Ma <nma@nvidia.com>
@wyli
support of reversed indexing (#3508)
1d3a9d7 
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
Nic-Ma and others added 29 commits March 12, 2022 12:02
@Nic-Ma
3904 improve output_transform of handlers (#3913)
7587e71 
* [DLMED] add ignore_data API

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] optimize the API

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] fix mypy

Signed-off-by: Nic Ma <nma@nvidia.com>
@Nic-Ma
3482 Add schema verification for metadata (#3865)
f15ff93 
* [DLMED] complete temp test schema

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] add cmd line API

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] fix typo

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] add more tests

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] add optional import

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] test with download link

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] enhance doc-string

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] fix mypy

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] remove DS_Store

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] update according to comments

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] update according to comments

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] add more tests

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] change "target_id" to "runner_id"

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] simplify command line

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] fix print summary logic

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] update log print to logging

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] compact commands

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] unify args update

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] update according to comments

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] skip windows

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] fix typo

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] optimize error log

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] update according to comments

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] update accoding to comments

Signed-off-by: Nic Ma <nma@nvidia.com>
@wyli
3914 optional lps to ras (#3929)
d8121d2 
* optional lps to ras

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* update based on comments

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* fixes #3934

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* update env

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
@victolee0
fix vnet typo (#3935)
f22067f 
fix docstring typo

Signed-off-by: victolee0 <39608452+victolee0@users.noreply.github.com>
@yiheng-wang-nv @pre-commit-ci
3918 Enhance the 1st conv layer of ResNet (#3946)
3ca3066 
* enhance 1st conv layer of ResNet

Signed-off-by: Yiheng Wang <vennw@nvidia.com>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* modify net adapeter unittest

Signed-off-by: Yiheng Wang <vennw@nvidia.com>

* use ensure_tuple_rep

Signed-off-by: Yiheng Wang <vennw@nvidia.com>

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@Nic-Ma
3943 Enhance LoadImage transform for customized readers (#3944)
3b771bb 
* [DLMED] enhance reader

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] update according to comments

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] fix docs

Signed-off-by: Nic Ma <nma@nvidia.com>
@wyli
3934 smaller integration tests for monai.bundle to avoid OOM (#3941)
33f632a 
* fixes #3934

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* min_test update

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* cu115 tests

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* update tests

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
@yiheng-wang-nv
3919 Use enums for reduction in DiceCELoss (#3953)
6ff8535 
* use enum for dicece reduction

Signed-off-by: Yiheng Wang <vennw@nvidia.com>

* use look up option

Signed-off-by: Yiheng Wang <vennw@nvidia.com>
@Nic-Ma
Workaround OOM issue in classification 2D integration tests (#3949)
6ea9742 
* [DLMED] update to 21.10

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] fix typo in integration test config

Signed-off-by: Nic Ma <nma@nvidia.com>
@juampatronics @monai-bot
1201 attention unet (#3948)
89056df 
* attention unet

Signed-off-by: Juan Pablo de la Cruz Gutiérrez <juampatronics@gmail.com>

* [MONAI] python code formatting

Signed-off-by: monai-bot <monai.miccai2019@gmail.com>

* fixed issues and added suggested improvements

Signed-off-by: Juan Pablo de la Cruz Gutierrez <juampatronics@gmail.com>

* fixed flake issues

* smaller tests

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Co-authored-by: monai-bot <monai.miccai2019@gmail.com>
@Nic-Ma
3482 Verify network input output shape (#3927)
8e1aacf 
* [DLMED] add verify script

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] fix typo

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] update according to comments

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] add unit tests and doc

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] fix flake8

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] skip min tests

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] remove doc-string

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] fix typo

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] update device names

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] update doc-string examples

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] enhance error message

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] cpu:0 to cpu

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] adjust "dataset_dir"

Signed-off-by: Nic Ma <nma@nvidia.com>
@wyli
optional meta_file (#3952)
55e6018 
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
@yiheng-wang-nv
update cachedataset num workers (#3963)
7ee3488 
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
@Nic-Ma
[DLMED] update installation doc (#3970)
be25a72 
Signed-off-by: Nic Ma <nma@nvidia.com>
@wyli
3942 3966 adds _requires_ and import support (#3945)
ec19406 
* fixes #3942

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* adds import statement

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* more tests

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* update to resolve import statement

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* update based on comments

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* update

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* update based on comments

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
@yiheng-wang-nv
fix fstring bugs (#3972)
459b188 
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
@ericspod
Minor change to UNet to permit greater modifiability (#3975)
40855f9 
* Minor change to UNet to permit greater modifiability

Signed-off-by: Eric Kerfoot <eric.kerfoot@kcl.ac.uk>

* Type fix

Signed-off-by: Eric Kerfoot <eric.kerfoot@kcl.ac.uk>

* Reverting minor change

Signed-off-by: Eric Kerfoot <eric.kerfoot@kcl.ac.uk>
@bhashemian
Contain WSIReader to colored 2D images (#3979)
bdeb662 
* Check images dimensions and color channels

Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com>
@wyli @pre-commit-ci
3961 fixes testing memory bug and revert the workaround (#3978)
42159ff 
* fixes multiprocessing memory issue

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* Revert "Workaround OOM issue in classification 2D integration tests (#3949)"

This reverts commit 6ea9742.

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* update tests

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* fixes typo

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@Nic-Ma
3482 Add support for relative IDs in the config content (#3974)
fbd09a1 
* [DLMED] support relative ids

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] update according to comments

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] fix typo in test

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] add description

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] optimize the logic

Signed-off-by: Nic Ma <nma@nvidia.com>
@wyli
3987 - fixes docstrings and adds checks (#3988)
7d8bb9b 
* fixes docstrings

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* update based on comments

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
@Nic-Ma
[DLMED] fix flake8 (#3991)
f11f58c 
Signed-off-by: Nic Ma <nma@nvidia.com>
@Nic-Ma @pre-commit-ci @wyli
3482 add export script for TorchScript file (#3965)
bfda331 
* [DLMED] add export script

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] add base unit test

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] add custom config item types and reference resolver

Signed-off-by: Nic Ma <nma@nvidia.com>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* [DLMED] enhance doc-string

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] fix typo

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] add logging

Signed-off-by: Nic Ma <nma@nvidia.com>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* [DLMED] remove customized configitem and resolver

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] remove assert ret

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] update to ckpt_export

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] update to .ts

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] update min test

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] simplify args

Signed-off-by: Nic Ma <nma@nvidia.com>

* fixes integration tests

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* [DLMED] change to coverage

Signed-off-by: Nic Ma <nma@nvidia.com>

* update integration tests

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* [DLMED] fix blossom

Signed-off-by: Nic Ma <nma@nvidia.com>

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Wenqi Li <831580+wyli@users.noreply.github.com>
Co-authored-by: Wenqi Li <wenqil@nvidia.com>
@Nic-Ma @monai-bot
3482 Add support to set config file for logging module (#3994)
03f8d80 
* [DLMED] add logging config

Signed-off-by: Nic Ma <nma@nvidia.com>

* [MONAI] python code formatting

Signed-off-by: monai-bot <monai.miccai2019@gmail.com>

* [DLMED] adjust config

Signed-off-by: Nic Ma <nma@nvidia.com>

* [DLMED] add doc-string

Signed-off-by: Nic Ma <nma@nvidia.com>

Co-authored-by: monai-bot <monai.miccai2019@gmail.com>
@yiheng-wang-nv
remove ambiguous or ops for optional args (#3997)
b91faa2 
Signed-off-by: Yiheng Wang <vennw@nvidia.com>
@wyli
4001 update mmars (#4002)
6d9918a 
* update mmars, fixes #4003

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* adds typing

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* update based on comments

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* workaround cucim

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
@bhashemian
Update cuCIM min dependency to support randomized transforms (#4004)
a676e38 
Signed-off-by: Behrooz <3968947+drbeh@users.noreply.github.com>
@wyli
4010 4016 fixes mmar integration tests (#4021)
df19315 
* fixes unit test

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* temp tests

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* adds docker version tests

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* fixes #4016

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* local tests

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* remove mmar cache daily

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* remove cache

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* Revert "temp tests"

This reverts commit 238d883.

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* fixes typo

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
@wyli @pre-commit-ci
3482 - update bundle doc (#3982)
3947d4e 
* update bundle doc

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* update meta

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* update intro

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* update examples

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* adds yaml demo

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* update schema

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* update toc

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* update doc page

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* $import

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* adds recommendations

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* update config

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* update based on comments

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* adds a link on CLI parsing

Signed-off-by: Wenqi Li <wenqil@nvidia.com>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@Nic-Ma Nic-Ma merged commit 8aeb5df into Nic-Ma:3482-disable-recursive-macro Mar 31, 2022
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