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Add common usage explanations and code examples to qiskit.visualization module API page #8569

Merged
merged 27 commits into from
Sep 8, 2022
Merged

Add common usage explanations and code examples to qiskit.visualization module API page #8569

merged 27 commits into from
Sep 8, 2022

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HuangJunye
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@HuangJunye HuangJunye commented Aug 17, 2022 •
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Summary

Add common usage explanations and code examples to qiskit.visualization module level API reference page.

Fix #8567

Details and comments

  • Add overview section
  • Add prerequisites section: install qiskit visualization optionals
  • Expand Counts and States Visualization section
    • Add section overview
    • Add APIs section with counts and states visualization sub sections
    • Add Example usage section
      • Counts visualization: use plot_histogram as example
      • State visualization: use plot_state_city as example
  • Add common keyword arguments from inherited from matplotlib
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coveralls commented Aug 17, 2022 •
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Pull Request Test Coverage Report for Build 3014449986

  • 0 of 0 changed or added relevant lines in 0 files are covered.
  • 2 unchanged lines in 1 file lost coverage.
  • Overall coverage increased (+0.001%) to 84.301%
Files with Coverage Reduction New Missed Lines %
qiskit/extensions/quantum_initializer/squ.py 2 79.78%
Totals Coverage Status
Change from base Build 3014392914: 0.001%
Covered Lines: 57816
Relevant Lines: 68583
💛 - Coveralls

@HuangJunye HuangJunye mentioned this pull request Aug 18, 2022
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@HuangJunye HuangJunye marked this pull request as ready for review August 31, 2022 10:35
@HuangJunye HuangJunye mentioned this pull request Aug 31, 2022
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@Guillermo-Mijares-Vilarino
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In general I think it's very nice. Liked the explanations and how you structured the section. I have some small comments however.

Guillermo-Mijares-Vilarino
Guillermo-Mijares-Vilarino reviewed Aug 31, 2022
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@HuangJunye HuangJunye added the documentation Something is not clear or an error documentation label Sep 2, 2022
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qiskit/visualization/__init__.py Outdated

.. jupyter-execute::

from qiskit.tools.visualization import plot_histogram
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Didn't notice that on my first read, but should we import qiskit.tools.visualization or qiskit.visualization?

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Good point. Look at the PR migrating the file, I think we should use qiskit.visualization. #1878

jakelishman
jakelishman reviewed Sep 7, 2022
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The text here generally looks good, thanks!

I've left some comments on general structuring of the documentation - mostly about avoiding adding a lot of visual clutter by nesting a lot of headings. Headings are good for separating content, but there's already a fairly natural visual distinction between a lot of the components, because of the splits between tables and prose.

It's also good not to categorise things too precisely (as in the common arguments section) - it can often mean that it's hard to spot relevant documentation when it applies to other functions, and introducing a lot of nested tree structure in the headings just to limit it results in an awkward number of headings with little information to users.

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jakelishman previously approved these changes Sep 7, 2022
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This generally looks good to me, thanks for the changes! If you as a team (you Junye, Guillermo and Luciano if he's involved?) are happy with this, I'll merge it.

@jakelishman jakelishman added the Changelog: None Do not include in changelog label Sep 7, 2022
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LGTM. Thanks for your contribution!

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@jakelishman @Guillermo-Mijares-Vilarino Thanks for the approvals! I just made some last minor changes. I think it's good to merge.

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1024 was already a round number ;)

@mergify mergify bot merged commit e9913e8 into Qiskit:main Sep 8, 2022
ewinston pushed a commit to ewinston/qiskit that referenced this pull request Sep 8, 2022
@HuangJunye @1ucian0
@mergify @ewinston
Add common usage explanations and code examples to qiskit.visualizati…
072c550 
…on module API page (Qiskit#8569)

* add draft

* revert unintended changes

* revert unintended changes

* add example usage

* add common keyword arguments section

* add sections to apis

* fix internal links

* remove generated hist figure

* lint

* use matplotlib instead of Matplotlib in class reference

* change to a valid denisty matrix in examples

* import from qiskit.visualization instead of qiskit.tools.visualization

* remove unintended changes

* split counts and state visualizations

* remove overview and prerequisite headings

* move common kwargs sections to the top level

* remove link to api table

* remove apis headings

* remove extra blank lines

* remove extra blank lines

* minor twig on the counts to make them 1000 shots in total

* add an intro sentence before the example for common kwargs

Co-authored-by: Luciano Bello <bel@zurich.ibm.com>
Co-authored-by: mergify[bot] <37929162+mergify[bot]@users.noreply.github.com>
@jakelishman jakelishman mentioned this pull request Sep 8, 2022
Closed
ewinston added a commit to ewinston/qiskit that referenced this pull request Oct 5, 2022
@ewinston
Squashed commit of the following:
2efddcb 
commit a3076a50524a72f1bc91cb633ec5c67a765ef937
Merge: 06dfe40 b7e6329
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Wed Oct 5 09:02:28 2022 -0400

    Merge branch 'main' into controlflow/stochastic_swap

commit 06dfe40
Author: ewinston <ewinston@us.ibm.com>
Date:   Tue Oct 4 23:34:42 2022 -0400

    Update qiskit/transpiler/passes/routing/stochastic_swap.py

    Co-authored-by: Jake Lishman <jake@binhbar.com>

commit 1487b80
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Tue Oct 4 23:33:34 2022 -0400

    simplify function and naming of control flow layer transpilation
    function

commit 5477c50
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Tue Oct 4 21:44:18 2022 -0400

    replace "maxind" with "deepest_index"

commit 02e704f
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Tue Oct 4 21:40:06 2022 -0400

    simplify determining idle qubits

commit 753a637
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Tue Oct 4 20:39:11 2022 -0400

    fix layer bug

    this fixes a bug where gates were dropped if they shared a layer with a
    control flow op.

commit 4dd68a9
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Tue Oct 4 11:48:01 2022 -0400

    remove _idle_wires function

commit d74b6ee
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Tue Oct 4 11:40:22 2022 -0400

    remove utils function for getting qubit order

commit 56029b1
Merge: 9d16884 53e215c
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Tue Oct 4 09:30:58 2022 -0400

    Merge branch 'main' into controlflow/stochastic_swap

commit 9d16884
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Tue Oct 4 03:00:22 2022 -0400

    make sure stochastic swap child instances get new seeds

commit dc5b23c
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Fri Sep 30 04:39:29 2022 -0400

    linting. fix merge error.

commit 302320d
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Fri Sep 30 04:32:39 2022 -0400

    merged main and renabled checkmap tests

commit 8ec9259
Merge: cb32908 3c9d8d5
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Fri Sep 30 04:14:53 2022 -0400

    Merge branch 'main' into controlflow/stochastic_swap

commit cb32908
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Fri Sep 30 02:28:01 2022 -0400

    updated to allow cf blocks with different registers than containing
    circuit.

commit fb0496e
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Thu Sep 29 15:38:28 2022 -0400

    fix while loop test

commit 463a466
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Wed Sep 28 14:26:14 2022 -0400

    simplify dadnode handling of swap and cz

commit 4f1af5b
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Thu Sep 8 13:16:15 2022 -0400

    remove merge artifact

commit 3133949
Merge: 3c85677 53231fb
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Thu Sep 8 13:15:18 2022 -0400

    Merge branch 'test_merge' into controlflow/stochastic_swap

commit 53231fb
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Thu Sep 8 12:24:55 2022 -0400

    remove redefiing coupling map in control flow context

commit 0161913
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Wed Jul 20 09:56:28 2022 -0400

    add controlflow handling to stochastic swap pass

commit 072c550
Author: Junye Huang <h.jun.ye@gmail.com>
Date:   Thu Sep 8 14:22:12 2022 +0200

    Add common usage explanations and code examples to qiskit.visualization module API page (Qiskit#8569)

    * add draft

    * revert unintended changes

    * revert unintended changes

    * add example usage

    * add common keyword arguments section

    * add sections to apis

    * fix internal links

    * remove generated hist figure

    * lint

    * use matplotlib instead of Matplotlib in class reference

    * change to a valid denisty matrix in examples

    * import from qiskit.visualization instead of qiskit.tools.visualization

    * remove unintended changes

    * split counts and state visualizations

    * remove overview and prerequisite headings

    * move common kwargs sections to the top level

    * remove link to api table

    * remove apis headings

    * remove extra blank lines

    * remove extra blank lines

    * minor twig on the counts to make them 1000 shots in total

    * add an intro sentence before the example for common kwargs

    Co-authored-by: Luciano Bello <bel@zurich.ibm.com>
    Co-authored-by: mergify[bot] <37929162+mergify[bot]@users.noreply.github.com>

commit 64bbeff
Author: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>
Date:   Thu Sep 8 19:38:53 2022 +0900

    Add an error check for Sampler (Qiskit#8678)

    * add an error check for sampler

    * update

    * Update qiskit/primitives/base_sampler.py

    Co-authored-by: Julien Gacon <gaconju@gmail.com>

    * remove a duplicate check

    * update an error messgage

    Co-authored-by: Julien Gacon <gaconju@gmail.com>

commit bb41815
Author: Luciano Bello <bel@zurich.ibm.com>
Date:   Thu Sep 8 00:52:46 2022 +0200

    Remove deprecated pulse-builder contexts (Qiskit#8697)

    * Remove qiskit.pulse.builder.inline as deprecated in 0.18.0 (2021-07-13)

    * remove imports

    * remove test

    * Remove qiskit.pulse.builder.pad as deprecated in 0.18.0 (2021-07-13)

    * reno

    * Reword removal note

    Co-authored-by: Jake Lishman <jake.lishman@ibm.com>

commit ee0a4f1
Author: Manoel Marques <Manoel.Marques@ibm.com>
Date:   Wed Sep 7 14:35:47 2022 -0400

    Improve HHL/Shor deprecated messages (Qiskit#8699)

commit ea4ebed
Author: a-matsuo <47442626+a-matsuo@users.noreply.github.com>
Date:   Wed Sep 7 17:33:53 2022 +0900

    Include primitive's run_options (Qiskit#8694)

    * include primitive's run_options

    * rename to get_local_run_options

commit a842f40
Author: Edwin Navarro <enavarro@comcast.net>
Date:   Tue Sep 6 18:12:00 2022 -0700

    Move circuit drawer files to `qiskit.visualization.circuit` (Qiskit#8306)

    * Add graph and circuit dirs

    * Move files to new folders

    * Finishing transition to circuit and graph dirs

    * Finish import changes

    * Positioning files and setting init entries

    * Final tweaks to compatibility and lint

    * Reduce to circuit dir only

    * Cleanup

    * Add qcstyle stub for docs

    * Merge main conflicts fix

    * Lint

    * Change test message

    * Fix _directive change

    * Fix op.condition reference

    * Change to _utils and cleanup

    * Lint

    * Fix _trim and dag_drawer test

    * Allow direct import of text, etc.

    * Add comment explaining backwards-compatibility imports

    * Add release note

    Co-authored-by: Jake Lishman <jake.lishman@ibm.com>

commit f4a5241
Author: Ikko Hamamura <ikkoham@users.noreply.github.com>
Date:   Tue Sep 6 00:37:43 2022 +0900

    Default run_options for Primitives (Qiskit#8513)

    * Add run_options to Primitives

    * rm unnecessary comments

    * initial commit of Settings dataclass

    * Revert "initial commit of Settings dataclass"

    This reverts commit 96b8479.

    * fix lint, improve docs, don't return self

    Co-authored-by: Julien Gacon <gaconju@gmail.com>
    Co-authored-by: mergify[bot] <37929162+mergify[bot]@users.noreply.github.com>

commit a8e553c
Author: a-matsuo <47442626+a-matsuo@users.noreply.github.com>
Date:   Mon Sep 5 21:05:35 2022 +0900

    Gradients with the primitives (Qiskit#8528)

    * added the gradients with the primitives

    Co-authored-by: Ikko Hamamura <ikkoham@users.noreply.github.com>
    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * add run_options and supported gate

    Co-authored-by: Ikko Hamamura <ikkoham@users.noreply.github.com>
    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * added unittests

    Co-authored-by: Ikko Hamamura <ikkoham@users.noreply.github.com>
    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * lint

    Co-authored-by: Ikko Hamamura <ikkoham@users.noreply.github.com>
    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * fix based on the comments

    Co-authored-by: Ikko Hamamura <ikkoham@users.noreply.github.com>
    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * fix

    Co-authored-by: Ikko Hamamura <ikkoham@users.noreply.github.com>
    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * add spsa gradient

    Co-authored-by: Ikko Hamamura <ikkoham@users.noreply.github.com>
    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * simplify + async

    Co-authored-by: Ikko Hamamura <ikkoham@users.noreply.github.com>
    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * added gradient variance

    Co-authored-by: Ikko Hamamura <ikkoham@users.noreply.github.com>
    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * lint

    Co-authored-by: Ikko Hamamura <ikkoham@users.noreply.github.com>
    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * added the run_options field

    Co-authored-by: Ikko Hamamura <ikkoham@users.noreply.github.com>
    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * fix lint

    Co-authored-by: Ikko Hamamura <ikkoham@users.noreply.github.com>
    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * fix based on comments

    Co-authored-by: Ikko Hamamura <ikkoham@users.noreply.github.com>
    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * wip fix2

    Co-authored-by: Ikko Hamamura <ikkoham@users.noreply.github.com>
    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * fix

    Co-authored-by: Ikko Hamamura <ikkoham@users.noreply.github.com>
    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * lint

    Co-authored-by: Ikko Hamamura <ikkoham@users.noreply.github.com>
    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * fix epsilon and doc

    * lint

    Co-authored-by: Ikko Hamamura <ikkoham@users.noreply.github.com>
    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * fix

    * Update qiskit/algorithms/gradients/base_sampler_gradient.py

    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * Update qiskit/algorithms/gradients/base_sampler_gradient.py

    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * Update qiskit/algorithms/gradients/base_estimator_gradient.py

    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * Update qiskit/algorithms/gradients/base_sampler_gradient.py

    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * Update qiskit/algorithms/gradients/base_estimator_gradient.py

    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * Update qiskit/algorithms/gradients/base_estimator_gradient.py

    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * change epsilon error

    Co-authored-by: Ikko Hamamura <ikkoham@users.noreply.github.com>
    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * Update qiskit/algorithms/gradients/estimator_gradient_result.py

    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * Update qiskit/algorithms/gradients/sampler_gradient_result.py

    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * add gradient test

    * added batch size in spsa gradients

    Co-authored-by: Ikko Hamamura <ikkoham@users.noreply.github.com>
    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * fix

    Co-authored-by: Ikko Hamamura <ikkoham@users.noreply.github.com>
    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * lint

    * Update qiskit/algorithms/gradients/lin_comb_estimator_gradient.py

    Co-authored-by: Julien Gacon <gaconju@gmail.com>

    * add operator tests

    Co-authored-by: Ikko Hamamura <ikkoham@users.noreply.github.com>
    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * consistent name

    * rewrite spsa

    Co-authored-by: Ikko Hamamura <ikkoham@users.noreply.github.com>
    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>

    * use algorithm job

    Co-authored-by: Ikko Hamamura <ikkoham@users.noreply.github.com>
    Co-authored-by: Takashi Imamichi <31178928+t-imamichi@users.noreply.github.com>
    Co-authored-by: Julien Gacon <gaconju@gmail.com>
    Co-authored-by: Takashi Imamichi <imamichi@jp.ibm.com>

commit 879f7ba
Author: dalin27 <77298980+dalin27@users.noreply.github.com>
Date:   Mon Sep 5 05:02:11 2022 +0300

    fixed issue 8670 by inverting qubits_coordinates and coupling_map (Qiskit#8671)

commit 3c85677
Merge: 33e0007 e9913e8
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Thu Sep 8 12:30:39 2022 -0400

    Merge branch 'main' into controlflow/stochastic_swap

commit 33e0007
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Thu Sep 8 12:24:55 2022 -0400

    remove redefiing coupling map in control flow context

commit cd9c5cf
Merge: ca4f477 aca01eb
Author: ewinston <ewinston@us.ibm.com>
Date:   Sat Sep 3 02:15:59 2022 -0400

    Merge branch 'main' into controlflow/stochastic_swap

commit ca4f477
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Fri Sep 2 16:15:08 2022 -0400

    remove breakpoint

commit ee78880
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Fri Sep 2 16:13:38 2022 -0400

    fix check_map

commit ef35278
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Fri Sep 2 01:13:12 2022 -0400

    add check_map to tests. tests passing

commit 349dca4
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Thu Sep 1 11:29:47 2022 -0400

    add check_map

commit cb1398d
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Wed Aug 31 22:29:37 2022 -0400

    convert up to for loop

commit 3169afd
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Tue Aug 30 15:54:53 2022 -0400

    lint

commit 2b8d5bb
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Mon Aug 29 16:02:12 2022 -0400

    rmove `continue` handling. raise error on unsupported control flow op.

commit 12fb4bc
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Mon Aug 29 15:55:44 2022 -0400

    remove DAGCircuit.control_flow_ops

commit 9a0ad5c
Merge: 09f8490 82e38d1
Author: ewinston <ewinston@us.ibm.com>
Date:   Fri Aug 12 10:46:41 2022 -0400

    Merge branch 'main' into controlflow/stochastic_swap

commit 09f8490
Author: Erick Winston <ewinston@us.ibm.com>
Date:   Wed Jul 20 09:56:28 2022 -0400

    add controlflow handling to stochastic swap pass
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Reviewers

@jakelishman jakelishman jakelishman approved these changes

@Guillermo-Mijares-Vilarino Guillermo-Mijares-Vilarino Guillermo-Mijares-Vilarino left review comments

@nonhermitian nonhermitian Awaiting requested review from nonhermitian nonhermitian is a code owner

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@Guillermo-Mijares-Vilarino Guillermo-Mijares-Vilarino

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Add common usage explanations and code examples to qiskit.visualization module level API reference page.
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@HuangJunye @qiskit-bot @coveralls @Guillermo-Mijares-Vilarino @jakelishman @1ucian0