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Tool: cath resolve hits

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Tony E Lewis edited this page Jan 9, 2018 · 1 revision

Notes on Possible Future Features

  • Add support for parsing hmmsearch's alignment output (-A <f>: save multiple alignment of all hits to file <s>).
  • Add support for parsing results from other formats (eg Blast Tabular, as also used by MMseqs2).
  • Do more of the processing of discontinuous models, currently done by Gene3D (see #44).
  • Consider making --output-hmmer-aln a public option.
  • Make CRH handle more of the processing of discontinuous models that's currently handled by Gene3D and then:
    • Use this to improve the way the --min-dc-hmm-coverage option works (currently identifies those domains with a regular expression on the ID).
    • Consider making --min-hmm-coverage and/or any discontinuous options public.
  • Improve helpfulness on failure to parse input (eg "Unable to parse/process resolve-hits input data") - eg remind the user of the possible --input-format options? Can it make some sensible attempt to guess the format? Are the hmmsearch/hmmscan inputs distinguishable?
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