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update 2021.4.28 #22

Merged
merged 40 commits into from
Apr 28, 2021
Merged

update 2021.4.28 #22

merged 40 commits into from
Apr 28, 2021

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XDZhelheim
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  • Change in CHANGELOG.md described in a way that is understandable for the average user (if applicable)
  • Tests created for changes (if applicable)
  • Manually tested changed features in running JabRef (always required)
  • Screenshots added in PR description (for UI changes)
  • Checked documentation: Is the information available and up to date? If not created an issue at https://github.com/JabRef/user-documentation/issues or, even better, submitted a pull request to the documentation repository.

dependabot bot and others added 30 commits April 5, 2021 12:32
@dependabot
Bump libreoffice from 7.1.1 to 7.1.2 (#7612)
ed3f931 
Bumps libreoffice from 7.1.1 to 7.1.2.

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump com.adarshr.test-logger from 2.1.1 to 3.0.0 (#7611)
14a751f 
Bumps com.adarshr.test-logger from 2.1.1 to 3.0.0.

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump org.beryx.jlink from 2.23.5 to 2.23.6 (#7610)
eddc81c 
Bumps org.beryx.jlink from 2.23.5 to 2.23.6.

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump unoloader from 7.1.1 to 7.1.2 (#7609)
aa4c393 
Bumps unoloader from 7.1.1 to 7.1.2.

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@yinpeiqi
Change export to save (#7518)
6837164 
* fix: change save and export

* fix: remove method changeExportDescriptionToSave

* fix: remove method changeExportDescriptionToSave

* fix: remove unused import
@BJaroszkowski
Custom DOI base address fix (#7569)
bc2fc07 
* using context menu and keyboard shortcut now correctly uses custom DOI

* clicking linked identifier symbol now correctly uses custom DOI

* updated changelog

* removed unneccesary check from LinkedIdentifierColumn since it is already handled by OpenUrlAction

* refactored openCustomDoi into static method of JabRefDesktop
@Siedlerchr
Main instead of master
132f232
@stefan-kolb
Update guidelines-for-setting-up-a-local-workspace.md (#7617)
2e3c1a1 
* Update guidelines-for-setting-up-a-local-workspace.md

* Update .markdownlint.yml
@dependabot
Bump styfle/cancel-workflow-action from 0.8.0 to 0.9.0 (#7620)
0df7948 
Bumps [styfle/cancel-workflow-action](https://github.com/styfle/cancel-workflow-action) from 0.8.0 to 0.9.0.
- [Release notes](https://github.com/styfle/cancel-workflow-action/releases)
- [Commits](styfle/cancel-workflow-action@0.8.0...89f242e)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump mockito-core from 3.8.0 to 3.9.0 (#7623)
1bd2962 
Bumps [mockito-core](https://github.com/mockito/mockito) from 3.8.0 to 3.9.0.
- [Release notes](https://github.com/mockito/mockito/releases)
- [Commits](mockito/mockito@v3.8.0...v3.9.0)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@sauliusg
Allow identical group names (#7558)
6903e0e 
Co-authored-by: Saulius Grazulis <saulius@grazulis.lt>
@tp-1000
Adds progress count to Possible Duplicates dialog (#7602)
c06966d 
fixes #7366

When processing duplicate entries,
Possible Duplicates dialog gave no indication as to progress.

To address this lack of feedback,
a progress counter was added to the title bar.

The title property now contains two updatable properties:
1) A total count of all duplicates
2) a count of how many duplicates have already been addressed

They are updated with listeners and bindings to
provide real time feedback.
@dependabot @koppor
Bump actions/setup-java from v1 to v2 (#7621)
e3094ac 
* Bump actions/setup-java from v1 to v2

Bumps [actions/setup-java](https://github.com/actions/setup-java) from v1 to v2.
- [Release notes](https://github.com/actions/setup-java/releases)
- [Commits](actions/setup-java@v1...8764a52)

Signed-off-by: dependabot[bot] <support@github.com>

* Add distribution: 'adopt'

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Oliver Kopp <kopp.dev@gmail.com>
@Siedlerchr
update to JabRef e.V. apple certs (#7626)
6d0c1be
@Siedlerchr
Update apple (#7628)
ed2b096 
* update to JabRef e.V. apple certs

* fix path to signed app
@koppor
Squashed 'buildres/csl/csl-styles/' changes from e1acabe..c363e8f (#7630
bb29bae 
)

c363e8f Update catholic-biblical-association.csl (#5360)
7e383b8 Fix locators in PU Paris-Nanterre (#5376)
83cb249 Update methods-of-information-in-medicine.csl (#5370)
5b19db4 Update taylor-and-francis-council-of-science-editors-author-date.csl (#5371)
27d116b Update harvard-cite-them-right-no-et-al.csl (#5373)
e2ef408 Update ageing-and-society.csl (#5375)
16098e4 Update triangle.csl (#5369)
133d633 Create university-of-tasmania-simplified-author-date.csl (#5357)
b9ecf07 Update revue-archeologique.csl (#5366)
6152cce Update journal-of-consumer-research.csl (#5358)
93f6600 Create refugee-survey-quarterly.csl (#5354)
bfa3b6d Update canadian-biosystems-engineering.csl (#5362)
53e75ee update doi prefix (#5361)
5b3de98 Create archives-of-hand-and-microsurgery.csl (#5363)

git-subtree-dir: buildres/csl/csl-styles
git-subtree-split: c363e8f

Co-authored-by: github actions <jabrefmail+webfeedback@gmail.com>
@dependabot
Bump jackson-datatype-jsr310 from 2.12.2 to 2.12.3 (#7647)
b2f6691 
Bumps jackson-datatype-jsr310 from 2.12.2 to 2.12.3.

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump archunit-junit5-engine from 0.17.0 to 0.18.0 (#7646)
cd1a8c3 
Bumps [archunit-junit5-engine](https://github.com/TNG/ArchUnit) from 0.17.0 to 0.18.0.
- [Release notes](https://github.com/TNG/ArchUnit/releases)
- [Commits](TNG/ArchUnit@v0.17.0...v0.18.0)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump byte-buddy-parent from 1.10.22 to 1.11.0 (#7644)
1945c6f 
Bumps [byte-buddy-parent](https://github.com/raphw/byte-buddy) from 1.10.22 to 1.11.0.
- [Release notes](https://github.com/raphw/byte-buddy/releases)
- [Changelog](https://github.com/raphw/byte-buddy/blob/master/release-notes.md)
- [Commits](raphw/byte-buddy@byte-buddy-1.10.22...byte-buddy-1.11.0)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump lucene-queryparser from 8.8.1 to 8.8.2 (#7643)
f430208 
Bumps lucene-queryparser from 8.8.1 to 8.8.2.

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump jackson-dataformat-yaml from 2.12.2 to 2.12.3 (#7645)
d10db0c 
Bumps [jackson-dataformat-yaml](https://github.com/FasterXML/jackson-dataformats-text) from 2.12.2 to 2.12.3.
- [Release notes](https://github.com/FasterXML/jackson-dataformats-text/releases)
- [Commits](FasterXML/jackson-dataformats-text@jackson-dataformats-text-2.12.2...jackson-dataformats-text-2.12.3)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@JavuesZhang
Fix#7195 partly
d2ff9e1 
Opacity of disabled icon-buttons
@Pikayue11
Fix for issue 7633: Unable to download arXiv pdfs if Title contains c…
23d7573 
…urly brackets (#7652)

* fix 7633

* Update CHANGELOG.md

* Update ArXivTest.java

* Update CHANGELOG.md

* Update ArXivTest.java

* Update StringUtil.java

* Update ArXiv.java

* add white space

* update checkstyle
@ruanych
Fix SSLHandshake Exception by using bypass (#7657)
2af578f 
* One solution for issue7616

* Add log to CHANGELOG.md

* Update code style.

* The user chooses to cancel the download, use Notify instead of InformationDialog to prompt the user.

* Update the variable naming in src/main/java/org/jabref/logic/net/URLDownload.java

Update the variable naming in src/main/java/org/jabref/logic/net/URLDownload.java, function setSSLVerification().



* Fix the bug of the variable name change

Fix the bug of the variable name change.
@MrGhabi @Siedlerchr
Fix for issue 5850: Journal abbreviations in UTF-8 not recognized (#7639
434250d 
)

* fix issue #5850 for encoding problem

* add a blank line for build.gradle

* initial as main branch for build.gradle

* initial as main branch for build.gradle

* add the change of fix information of issue 5850

* Fix check style

* Update CHANGELOG.md

Co-authored-by: Christoph <siedlerkiller@gmail.com>

* Add the utf8 check for biblatex and ascii check for bibtex

* add the new localization string the l10 files

* fix error

* add the statement only in en.properties

* revert changes

* Update JabRef_da.properties

* Update JabRef_ru.properties

* Update build.gradle

* Update JabRef_fa.properties

* Update JabRef_no.properties

* Update JabRef_pl.properties

* Update JabRef_pt.properties

* Update JabRef_vi.properties

* Update JabRef_zh_TW.properties

* reset the default charset

* reset the default charset

* add the javaDoc of UTF8Checker

* add the javaDoc of UTF8CheckerTest and IntegrityCheckTest

add 2 Junit Test for UTF8Checker.UTF8EncodingChecker in UTF8CheckerTest

add 2 Junit Test for IntegrityCheck in IntegrityCheckTest

* Remove the unwieldy Junit tests

Co-authored-by: Christoph <siedlerkiller@gmail.com>
@Siedlerchr
Merge branch 'main' into main
3586f00
@Siedlerchr
Merge branch 'JavuesZhang-main'
429b3d0 
* JavuesZhang-main:
  Fix#7195 partly Opacity of disabled icon-buttons
@JavuesZhang
Fixes #7660 (#7663)
f815050 
1. Run EprintCleanup on a copy of the entry the ArXiv fetcher is fetching before getting arXiv id from the eprint field;
2. Add two test method. One finds full text with title containing colon and journal, while another finds full text with title containing colon and url.
@Fifi-wang @Siedlerchr
Fix exception when searching (#7659)
4bf895b 
* repair issue7343

* change CHANGELOG.md

* change style

* change cleanup

* Update CHANGELOG.md

Co-authored-by: Christoph <siedlerkiller@gmail.com>
@dependabot
Bump org.beryx.jlink from 2.23.6 to 2.23.7 (#7669)
c223c31 
Bumps org.beryx.jlink from 2.23.6 to 2.23.7.

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
dependabot bot and others added 10 commits April 26, 2021 08:22
@dependabot
Bump postgresql from 42.2.19 to 42.2.20 (#7670)
cf2c07b 
Bumps [postgresql](https://github.com/pgjdbc/pgjdbc) from 42.2.19 to 42.2.20.
- [Release notes](https://github.com/pgjdbc/pgjdbc/releases)
- [Changelog](https://github.com/pgjdbc/pgjdbc/blob/REL42.2.20/CHANGELOG.md)
- [Commits](pgjdbc/pgjdbc@REL42.2.19...REL42.2.20)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump checkstyle from 8.41.1 to 8.42 (#7668)
68095ab 
Bumps [checkstyle](https://github.com/checkstyle/checkstyle) from 8.41.1 to 8.42.
- [Release notes](https://github.com/checkstyle/checkstyle/releases)
- [Commits](checkstyle/checkstyle@checkstyle-8.41.1...checkstyle-8.42)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@devinluo27 @Siedlerchr
Fix for issue 6199: EndNote .xml import to JabRef: PDF links are not …
21abebe 
…imported corrected. (#7667)

* Fix for issue 6199: EndNote .xml import to JabRef: PDF links are not imported correctly. (#6199)

* fix issue #6199 finish checkstyle

Co-authored-by: Christoph <siedlerkiller@gmail.com>
@Gan-Cheng @Siedlerchr
Fix for issue 7641: Wrong path to TeXstudio (#7664)
b5c6b72 
* Fix the issue 7641

* improve the function used and remove useless output

Co-authored-by: Christoph <siedlerkiller@gmail.com>
@JavuesZhang @Siedlerchr
Fixes #7016 (#7656)
eecd082 
Make a copy of selected entries and change field in the copy so that the sort strategy will not influence the result.

Co-authored-by: Christoph <siedlerkiller@gmail.com>
@Davfon
Add more unit tests (#7649)
7271f6b 
* add more unit tests

improves code coverage

* Delete unnecessary test
@ningxie1991 @Siedlerchr
Add more unit tests to three gui classes (#7636)
7aff889 
* Added two Junit tests using mocks for the gui

* Add JUnit test with mocks for CopyMoreAction

* organized imports

* modified the tests

* Modified the tests

* fix checkstyle issue and comment out the use of Globals

* Extract Globals.prefs

* Update ExportToClipboardActionTest.java

* Fix checkstyle issues

* Fix checkstyle issue

Co-authored-by: Siedlerchr <siedlerkiller@gmail.com>
@BenArou
delete bug fix (#7580)
bee2dc8
@Siedlerchr
add missing changelog
add694a
@Siedlerchr
Fix threading cleanup in performSearch (#7672)
d320975 
* Fix threading cleanup in performSearch

Fixes #7606

* Fix variable

* use bibdatabase mode

* cleanup is already done in import handler

* Should fix 1018
@XDZhelheim XDZhelheim merged commit 1c7511d into XDZhelheim:main Apr 28, 2021
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