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update 2021.4.28 #22

Merged
merged 40 commits into from
Apr 28, 2021
Merged

update 2021.4.28 #22

merged 40 commits into from
Apr 28, 2021

Commits on Apr 5, 2021

  1. Bump libreoffice from 7.1.1 to 7.1.2 (#7612)

    Bumps libreoffice from 7.1.1 to 7.1.2.
    
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  2. Bump com.adarshr.test-logger from 2.1.1 to 3.0.0 (#7611)

    Bumps com.adarshr.test-logger from 2.1.1 to 3.0.0.
    
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    dependabot[bot] authored Apr 5, 2021
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  3. Bump org.beryx.jlink from 2.23.5 to 2.23.6 (#7610)

    Bumps org.beryx.jlink from 2.23.5 to 2.23.6.
    
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    dependabot[bot] authored Apr 5, 2021
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  4. Bump unoloader from 7.1.1 to 7.1.2 (#7609)

    Bumps unoloader from 7.1.1 to 7.1.2.
    
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    dependabot[bot] authored Apr 5, 2021
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  5. Change export to save (#7518)

    * fix: change save and export
    
    * fix: remove method changeExportDescriptionToSave
    
    * fix: remove method changeExportDescriptionToSave
    
    * fix: remove unused import
    yinpeiqi authored Apr 5, 2021
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Commits on Apr 8, 2021

  1. Custom DOI base address fix (#7569)

    * using context menu and keyboard shortcut now correctly uses custom DOI
    
    * clicking linked identifier symbol now correctly uses custom DOI
    
    * updated changelog
    
    * removed unneccesary check from LinkedIdentifierColumn since it is already handled by OpenUrlAction
    
    * refactored openCustomDoi into static method of JabRefDesktop
    BJaroszkowski authored Apr 8, 2021
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  2. Main instead of master

    Siedlerchr authored Apr 8, 2021
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Commits on Apr 11, 2021

  1. Update guidelines-for-setting-up-a-local-workspace.md (#7617)

    * Update guidelines-for-setting-up-a-local-workspace.md
    
    * Update .markdownlint.yml
    stefan-kolb authored Apr 11, 2021
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Commits on Apr 12, 2021

  1. Bump styfle/cancel-workflow-action from 0.8.0 to 0.9.0 (#7620)

    Bumps [styfle/cancel-workflow-action](https://github.com/styfle/cancel-workflow-action) from 0.8.0 to 0.9.0.
    - [Release notes](https://github.com/styfle/cancel-workflow-action/releases)
    - [Commits](styfle/cancel-workflow-action@0.8.0...89f242e)
    
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    dependabot[bot] authored Apr 12, 2021
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  2. Bump mockito-core from 3.8.0 to 3.9.0 (#7623)

    Bumps [mockito-core](https://github.com/mockito/mockito) from 3.8.0 to 3.9.0.
    - [Release notes](https://github.com/mockito/mockito/releases)
    - [Commits](mockito/mockito@v3.8.0...v3.9.0)
    
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    dependabot[bot] authored Apr 12, 2021
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  3. Allow identical group names (#7558)

    Co-authored-by: Saulius Grazulis <saulius@grazulis.lt>
    sauliusg and Saulius Grazulis authored Apr 12, 2021
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  4. Adds progress count to Possible Duplicates dialog (#7602)

    fixes #7366
    
    When processing duplicate entries,
    Possible Duplicates dialog gave no indication as to progress.
    
    To address this lack of feedback,
    a progress counter was added to the title bar.
    
    The title property now contains two updatable properties:
    1) A total count of all duplicates
    2) a count of how many duplicates have already been addressed
    
    They are updated with listeners and bindings to
    provide real time feedback.
    tp-1000 authored Apr 12, 2021
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  5. Bump actions/setup-java from v1 to v2 (#7621)

    * Bump actions/setup-java from v1 to v2
    
    Bumps [actions/setup-java](https://github.com/actions/setup-java) from v1 to v2.
    - [Release notes](https://github.com/actions/setup-java/releases)
    - [Commits](actions/setup-java@v1...8764a52)
    
    Signed-off-by: dependabot[bot] <support@github.com>
    
    * Add distribution: 'adopt'
    
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
    Co-authored-by: Oliver Kopp <kopp.dev@gmail.com>
    dependabot[bot] and koppor authored Apr 12, 2021
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Commits on Apr 13, 2021

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  2. Update apple (#7628)

    * update to JabRef e.V. apple certs
    
    * fix path to signed app
    Siedlerchr authored Apr 13, 2021
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Commits on Apr 16, 2021

  1. Squashed 'buildres/csl/csl-styles/' changes from e1acabe..c363e8f (#7630

    )
    
    c363e8f Update catholic-biblical-association.csl (#5360)
    7e383b8 Fix locators in PU Paris-Nanterre (#5376)
    83cb249 Update methods-of-information-in-medicine.csl (#5370)
    5b19db4 Update taylor-and-francis-council-of-science-editors-author-date.csl (#5371)
    27d116b Update harvard-cite-them-right-no-et-al.csl (#5373)
    e2ef408 Update ageing-and-society.csl (#5375)
    16098e4 Update triangle.csl (#5369)
    133d633 Create university-of-tasmania-simplified-author-date.csl (#5357)
    b9ecf07 Update revue-archeologique.csl (#5366)
    6152cce Update journal-of-consumer-research.csl (#5358)
    93f6600 Create refugee-survey-quarterly.csl (#5354)
    bfa3b6d Update canadian-biosystems-engineering.csl (#5362)
    53e75ee update doi prefix (#5361)
    5b3de98 Create archives-of-hand-and-microsurgery.csl (#5363)
    
    git-subtree-dir: buildres/csl/csl-styles
    git-subtree-split: c363e8f
    
    Co-authored-by: github actions <jabrefmail+webfeedback@gmail.com>
    koppor and github actions authored Apr 16, 2021
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Commits on Apr 19, 2021

  1. Bump jackson-datatype-jsr310 from 2.12.2 to 2.12.3 (#7647)

    Bumps jackson-datatype-jsr310 from 2.12.2 to 2.12.3.
    
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    dependabot[bot] authored Apr 19, 2021
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  2. Bump archunit-junit5-engine from 0.17.0 to 0.18.0 (#7646)

    Bumps [archunit-junit5-engine](https://github.com/TNG/ArchUnit) from 0.17.0 to 0.18.0.
    - [Release notes](https://github.com/TNG/ArchUnit/releases)
    - [Commits](TNG/ArchUnit@v0.17.0...v0.18.0)
    
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    dependabot[bot] authored Apr 19, 2021
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  3. Bump byte-buddy-parent from 1.10.22 to 1.11.0 (#7644)

    Bumps [byte-buddy-parent](https://github.com/raphw/byte-buddy) from 1.10.22 to 1.11.0.
    - [Release notes](https://github.com/raphw/byte-buddy/releases)
    - [Changelog](https://github.com/raphw/byte-buddy/blob/master/release-notes.md)
    - [Commits](raphw/byte-buddy@byte-buddy-1.10.22...byte-buddy-1.11.0)
    
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    dependabot[bot] authored Apr 19, 2021
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  4. Bump lucene-queryparser from 8.8.1 to 8.8.2 (#7643)

    Bumps lucene-queryparser from 8.8.1 to 8.8.2.
    
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    dependabot[bot] authored Apr 19, 2021
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  5. Bump jackson-dataformat-yaml from 2.12.2 to 2.12.3 (#7645)

    Bumps [jackson-dataformat-yaml](https://github.com/FasterXML/jackson-dataformats-text) from 2.12.2 to 2.12.3.
    - [Release notes](https://github.com/FasterXML/jackson-dataformats-text/releases)
    - [Commits](FasterXML/jackson-dataformats-text@jackson-dataformats-text-2.12.2...jackson-dataformats-text-2.12.3)
    
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    dependabot[bot] authored Apr 19, 2021
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Commits on Apr 20, 2021

  1. Fix#7195 partly

    Opacity of disabled icon-buttons
    JavuesZhang committed Apr 20, 2021
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  2. Fix for issue 7633: Unable to download arXiv pdfs if Title contains c…

    …urly brackets (#7652)
    
    * fix 7633
    
    * Update CHANGELOG.md
    
    * Update ArXivTest.java
    
    * Update CHANGELOG.md
    
    * Update ArXivTest.java
    
    * Update StringUtil.java
    
    * Update ArXiv.java
    
    * add white space
    
    * update checkstyle
    Pikayue11 authored Apr 20, 2021
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Commits on Apr 22, 2021

  1. Fix SSLHandshake Exception by using bypass (#7657)

    * One solution for issue7616
    
    * Add log to CHANGELOG.md
    
    * Update code style.
    
    * The user chooses to cancel the download, use Notify instead of InformationDialog to prompt the user.
    
    * Update the variable naming in src/main/java/org/jabref/logic/net/URLDownload.java
    
    Update the variable naming in src/main/java/org/jabref/logic/net/URLDownload.java, function setSSLVerification().
    
    
    
    * Fix the bug of the variable name change
    
    Fix the bug of the variable name change.
    ruanych authored Apr 22, 2021
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Commits on Apr 23, 2021

  1. Fix for issue 5850: Journal abbreviations in UTF-8 not recognized (#7639

    )
    
    * fix issue #5850 for encoding problem
    
    * add a blank line for build.gradle
    
    * initial as main branch for build.gradle
    
    * initial as main branch for build.gradle
    
    * add the change of fix information of issue 5850
    
    * Fix check style
    
    * Update CHANGELOG.md
    
    Co-authored-by: Christoph <siedlerkiller@gmail.com>
    
    * Add the utf8 check for biblatex and ascii check for bibtex
    
    * add the new localization string the l10 files
    
    * fix error
    
    * add the statement only in en.properties
    
    * revert changes
    
    * Update JabRef_da.properties
    
    * Update JabRef_ru.properties
    
    * Update build.gradle
    
    * Update JabRef_fa.properties
    
    * Update JabRef_no.properties
    
    * Update JabRef_pl.properties
    
    * Update JabRef_pt.properties
    
    * Update JabRef_vi.properties
    
    * Update JabRef_zh_TW.properties
    
    * reset the default charset
    
    * reset the default charset
    
    * add the javaDoc of UTF8Checker
    
    * add the javaDoc of UTF8CheckerTest and IntegrityCheckTest
    
    add 2 Junit Test for UTF8Checker.UTF8EncodingChecker in UTF8CheckerTest
    
    add 2 Junit Test for IntegrityCheck in IntegrityCheckTest
    
    * Remove the unwieldy Junit tests
    
    Co-authored-by: Christoph <siedlerkiller@gmail.com>
    MrGhabi and Siedlerchr authored Apr 23, 2021
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  3. Merge branch 'JavuesZhang-main'

    * JavuesZhang-main:
      Fix#7195 partly Opacity of disabled icon-buttons
    Siedlerchr committed Apr 23, 2021
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  4. Fixes #7660 (#7663)

    1. Run EprintCleanup on a copy of the entry the ArXiv fetcher is fetching before getting arXiv id from the eprint field;
    2. Add two test method. One finds full text with title containing colon and journal, while another finds full text with title containing colon and url.
    JavuesZhang authored Apr 23, 2021
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Commits on Apr 24, 2021

  1. Fix exception when searching (#7659)

    * repair issue7343
    
    * change CHANGELOG.md
    
    * change style
    
    * change cleanup
    
    * Update CHANGELOG.md
    
    Co-authored-by: Christoph <siedlerkiller@gmail.com>
    Fifi-wang and Siedlerchr authored Apr 24, 2021
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Commits on Apr 26, 2021

  1. Bump org.beryx.jlink from 2.23.6 to 2.23.7 (#7669)

    Bumps org.beryx.jlink from 2.23.6 to 2.23.7.
    
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    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
    dependabot[bot] authored Apr 26, 2021
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  2. Bump postgresql from 42.2.19 to 42.2.20 (#7670)

    Bumps [postgresql](https://github.com/pgjdbc/pgjdbc) from 42.2.19 to 42.2.20.
    - [Release notes](https://github.com/pgjdbc/pgjdbc/releases)
    - [Changelog](https://github.com/pgjdbc/pgjdbc/blob/REL42.2.20/CHANGELOG.md)
    - [Commits](pgjdbc/pgjdbc@REL42.2.19...REL42.2.20)
    
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    dependabot[bot] authored Apr 26, 2021
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  3. Bump checkstyle from 8.41.1 to 8.42 (#7668)

    Bumps [checkstyle](https://github.com/checkstyle/checkstyle) from 8.41.1 to 8.42.
    - [Release notes](https://github.com/checkstyle/checkstyle/releases)
    - [Commits](checkstyle/checkstyle@checkstyle-8.41.1...checkstyle-8.42)
    
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    dependabot[bot] authored Apr 26, 2021
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  4. Fix for issue 6199: EndNote .xml import to JabRef: PDF links are not …

    …imported corrected. (#7667)
    
    * Fix for issue 6199: EndNote .xml import to JabRef: PDF links are not imported correctly. (#6199)
    
    * fix issue #6199 finish checkstyle
    
    Co-authored-by: Christoph <siedlerkiller@gmail.com>
    devinluo27 and Siedlerchr authored Apr 26, 2021
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  5. Fix for issue 7641: Wrong path to TeXstudio (#7664)

    * Fix the issue 7641
    
    * improve the function used and remove useless output
    
    Co-authored-by: Christoph <siedlerkiller@gmail.com>
    Gan-Cheng and Siedlerchr authored Apr 26, 2021
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  6. Fixes #7016 (#7656)

    Make a copy of selected entries and change field in the copy so that the sort strategy will not influence the result.
    
    Co-authored-by: Christoph <siedlerkiller@gmail.com>
    JavuesZhang and Siedlerchr authored Apr 26, 2021
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  7. Add more unit tests (#7649)

    * add more unit tests
    
    improves code coverage
    
    * Delete unnecessary test
    Davfon authored Apr 26, 2021
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  8. Add more unit tests to three gui classes (#7636)

    * Added two Junit tests using mocks for the gui
    
    * Add JUnit test with mocks for CopyMoreAction
    
    * organized imports
    
    * modified the tests
    
    * Modified the tests
    
    * fix checkstyle issue and comment out the use of Globals
    
    * Extract Globals.prefs
    
    * Update ExportToClipboardActionTest.java
    
    * Fix checkstyle issues
    
    * Fix checkstyle issue
    
    Co-authored-by: Siedlerchr <siedlerkiller@gmail.com>
    ningxie1991 and Siedlerchr authored Apr 26, 2021
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  9. delete bug fix (#7580)

    BenArou authored Apr 26, 2021
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  10. add missing changelog

    Siedlerchr committed Apr 26, 2021
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Commits on Apr 27, 2021

  1. Fix threading cleanup in performSearch (#7672)

    * Fix threading cleanup in performSearch
    
    Fixes #7606
    
    * Fix variable
    
    * use bibdatabase mode
    
    * cleanup is already done in import handler
    
    * Should fix 1018
    Siedlerchr authored Apr 27, 2021
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