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Support CRAM input/output #1141

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fnothaft opened this issue Aug 30, 2016 · 1 comment
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Support CRAM input/output #1141

fnothaft opened this issue Aug 30, 2016 · 1 comment
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@fnothaft
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0.20.0

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@fnothaft
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As the subject says, we should be able to support CRAM now that it is in Hadoop-BAM.
@fnothaft fnothaft self-assigned this Aug 30, 2016
@heuermh
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heuermh commented Aug 31, 2016

+1

fnothaft added a commit to fnothaft/adam that referenced this issue Sep 1, 2016
@fnothaft
[ADAM-1141] Add support for saving/loading AlignmentRecords to/from C…
e18db5a 
…RAM.

Resolves bigdatagenomics#1141. Changes the signature of `AlignmentRecordRDD.saveAsSAM` to take
an `Option[SAMFormat]` parameter, since `asSam` is now no longer a binary
choice.
@fnothaft fnothaft mentioned this issue Sep 1, 2016
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@heuermh heuermh modified the milestone: 0.20.0 Sep 7, 2016
@heuermh heuermh mentioned this issue Sep 7, 2016
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fnothaft added a commit to fnothaft/adam that referenced this issue Sep 11, 2016
@fnothaft
[ADAM-1141] Add support for saving/loading AlignmentRecords to/from C…
37a8292 
…RAM.

Resolves bigdatagenomics#1141. Changes the signature of `AlignmentRecordRDD.saveAsSAM` to take
an `Option[SAMFormat]` parameter, since `asSam` is now no longer a binary
choice.
fnothaft added a commit to fnothaft/adam that referenced this issue Sep 13, 2016
@fnothaft
[ADAM-1141] Add support for saving/loading AlignmentRecords to/from C…
9a22a0a 
…RAM.

Resolves bigdatagenomics#1141. Changes the signature of `AlignmentRecordRDD.saveAsSAM` to take
an `Option[SAMFormat]` parameter, since `asSam` is now no longer a binary
choice.
fnothaft added a commit to fnothaft/adam that referenced this issue Sep 13, 2016
@fnothaft
[ADAM-1141] Add support for saving/loading AlignmentRecords to/from C…
0b7e03e 
…RAM.

Resolves bigdatagenomics#1141. Changes the signature of `AlignmentRecordRDD.saveAsSAM` to take
an `Option[SAMFormat]` parameter, since `asSam` is now no longer a binary
choice.
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