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Clickhouse implementation of study view #10304

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@alisman alisman commented Aug 1, 2023

Fix # (see https://help.github.com/en/articles/closing-issues-using-keywords)

Describe changes proposed in this pull request:

  • a
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  • Runs on heroku
  • Has tests or has a separate issue that describes the types of test that should be created. If no test is included it should explicitly be mentioned in the PR why there is no test.
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  • Is this PR adding logic based on one or more clinical attributes? If yes, please make sure validation for this attribute is also present in the data validation / data loading layers (in backend repo) and documented in File-Formats Clinical data section!

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pvannierop and others added 29 commits March 15, 2023 21:36
- Add versionRange to pom.xml to conform to specifications
- Add ClickHouseDB query for retrieving sample_ids from sample table based on attribute
…nd mutated genes (#10213)

Co-authored-by: Bryan Lai <laib1@mskcc.org>
* revert study view controller original endpoints and rename clickhouse endpoints

* add mybatiscolumnstore to test application context
…10245)

* Extract column store endpoints into StudyViewControllerColumnStore

* rename
Migrate mutated-genes and clinical-data-counts to clickhouse-ish implementations
---------

Co-authored-by: haynescd <haynescd@chop.edu>
@alisman alisman changed the title Demo clickhouse charles Clickhouse implementation of study view Jan 8, 2024
@JREastonMarks JREastonMarks deleted the demo-clickhouse-charles branch March 1, 2024 14:03
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6 participants