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45 Open 39 Closed
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Issues list

Svtyper does not support TRA type.
#128 opened Jun 16, 2024 by pingxinxing
Warning: Unsupported SVTYPE at variant MantaBND:93:0:1:0:1:0:0 (TRA). Skipping.
#127 opened Jun 7, 2024 by pingxinxing
1
KeyError: 'RG'
#126 opened Oct 11, 2023 by karen916
how to filter SV using the "QUAL" threshold
#125 opened Jul 20, 2023 by jackzhong1995
Reference calls with no support and missing calls
#124 opened Aug 23, 2021 by aariani
I have question about Genotype information in SVtyper output
#123 opened Jun 9, 2021 by u1200538
Issue while running the executable.
#122 opened Apr 23, 2021 by kghimire09
5
update for original paper link
#120 opened Oct 31, 2020 by esolares
Error: invalid FORMAT field, "+"
#118 opened Aug 29, 2020 by edgarsierraorozco
The meaning of the parameters
#117 opened Aug 21, 2020 by tyyiyi
Precise breakpoints
#116 opened Jun 21, 2020 by biozzq
Failed to build insert size histogram for paired-end reads.
#115 opened Jun 16, 2020 by tirohia
Key Error(s) being thrown for various call sets in C elegans
#114 opened Apr 21, 2020 by moldach
annotate translocations with svtyper
#113 opened Apr 7, 2020 by jazberna1
2
recommendation for numpy version for svtyper 0.7.1
#109 opened Oct 14, 2019 by kgaonkar6
How to understand the output genotyped from svtyper?
#108 opened Oct 13, 2019 by xujinshengjsxu
is there a clear pipline for paired or tumor-only and json file is what? thanks a lot
#106 opened Aug 17, 2019 by wentgithub
header parsing can't handle ">" in description
#105 opened May 22, 2019 by brentp
3
svtyper-sso can not deal with multiple bam files?
#104 opened Apr 30, 2019 by verne91
KeyError: 'CIPOS'
#103 opened Apr 29, 2019 by verne91
1
On making precision-recall curves: quality info? lenient parameters?
#101 opened Mar 7, 2019 by jmonlong
Does svtyper calculate read pairs which have long overlap twice?
#100 opened Feb 15, 2019 by xyw1
SVtyper questions / issues
#99 opened Dec 11, 2018 by calhoujd
Question about parameter 'max_reads' of classic svtyper.
#98 opened Sep 14, 2018 by lss1227
Best FORMAT field for filtering SVTyper Output
#95 opened Sep 7, 2018 by andrewSharo
2
ProTip! no:milestone will show everything without a milestone.