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thanks a lot for developing this tool. I already found between the issues that sometimes svtyper reports REF calls without support (10/0:0:4.77:0,0,0:0:0:0:0:0:0:0:0:0:0:.) when there are no reads aligning in a region (as described in #65 ).
However in my results I can also find missing calls ( ./.:.:.:.:0:0:0:0:0:0:0:0:0:0:.). What's the difference between the 2 type of calls?
The text was updated successfully, but these errors were encountered:
Dear,
thanks a lot for developing this tool. I already found between the issues that sometimes svtyper reports REF calls without support (
10/0:0:4.77:0,0,0:0:0:0:0:0:0:0:0:0:0:.
) when there are no reads aligning in a region (as described in #65 ).However in my results I can also find missing calls (
./.:.:.:.:0:0:0:0:0:0:0:0:0:0:.
). What's the difference between the 2 type of calls?The text was updated successfully, but these errors were encountered: