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Reference calls with no support and missing calls #124

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aariani opened this issue Aug 23, 2021 · 0 comments
Open

Reference calls with no support and missing calls #124

aariani opened this issue Aug 23, 2021 · 0 comments

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@aariani
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aariani commented Aug 23, 2021

Dear,

thanks a lot for developing this tool. I already found between the issues that sometimes svtyper reports REF calls without support (10/0:0:4.77:0,0,0:0:0:0:0:0:0:0:0:0:0:.) when there are no reads aligning in a region (as described in #65 ).

However in my results I can also find missing calls ( ./.:.:.:.:0:0:0:0:0:0:0:0:0:0:.). What's the difference between the 2 type of calls?

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