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Reference genotypes with no support #65

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ernfrid opened this issue Oct 18, 2017 · 1 comment
Open

Reference genotypes with no support #65

ernfrid opened this issue Oct 18, 2017 · 1 comment

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@ernfrid
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ernfrid commented Oct 18, 2017

I'm seeing samples genotyped as follows:

GT:GQ:SQ:GL:DP:RO:AO:QR:QA:RS:AS:ASC:RP:AP:AB 0/0:1:4.77:0,0,0:0:0:0:0:0:0:0:0:0:0:.

It seems like this should be reported as a null genotype instead...
@indraniel
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This situation happens when there are no reads found for a given region in a given SV.

@aariani aariani mentioned this issue Aug 23, 2021
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@indraniel @ernfrid