Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update typeservice to V3 #2924

Merged
merged 6 commits into from
Sep 26, 2022
Merged

Conversation

mccalluc
Copy link
Contributor

@mccalluc mccalluc commented Sep 23, 2022

This change could have been made in env or in commons... but since we forgot to make the changes there before migration, it makes sense to make it here.

Going forward, if there's a "v4", there's one line that will need to be changed in portal-ui and no env change will be required.

On the service page, the new entry looks like:

type-api Up https://search.api.hubmapconsortium.org/v3 search-adaptor 3.0.1 main:2e984ee Included in search-api for historical reasons.

Copy link
Member

@yuanzhou yuanzhou left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Due to the fact that search-api v3 reflects Elasticsearch fields changes (metadata and files ...) compared to the v2, please verify the Vitessce view still works against the v3 search results. Other components of portal-ui have been tested against v3 and migrated accordingly.

@mccalluc mccalluc merged commit 7a2d24f into main Sep 26, 2022
@mccalluc mccalluc deleted the mccalluc/debug-vitessce-search-api-dep branch September 26, 2022 13:15
@mccalluc mccalluc mentioned this pull request Sep 26, 2022
ilan-gold pushed a commit that referenced this pull request Oct 3, 2022
* Mccalluc/dev search warning (#2915)

* Add infobox to devsearch

* changelog

* Reenable WS deletion (#2914)

* Add link to menu (#2913)

* Mccalluc/fix services (#2917)

* update the service table

* changelog

* John conroy/preserve cells order (#2911)

* Use order from cells service

* Add test

* Add changelog

Co-authored-by: John Conroy <john-conroy@users.noreply.github.com>

* Mccalluc/marker gene to marker (#2920)

* Fix kwarg... but vis still not working?

* upgrade portal-visualization; rebuild requirements

* John conroy/fix url sync (#2909)

* Update redeploy script

* Add changelog

* Fix race condition in useSearchkitSDK

* Use abort controller

* Add changelog

* Console error if not abort error

Co-authored-by: John Conroy <john-conroy@users.noreply.github.com>

* John conroy/rotate chart labels (#2912)

* Pull longest label measurement to hook

* Adjust bottom margin based on longest x axis tick label

* Fix x scale band in dataset cluster chart

* Rotate axis tick labels

* Remove unused state from chart tooltip hook

* Add tick label tooltip

* Refactor tooltip

* Trim tick label strings

* Add offset for rotated histogram labels

* Add changelog

* Update histogram margin

* Update context/app/static/js/shared-styles/charts/utils.js

Co-authored-by: Chuck McCallum <mccalluc@users.noreply.github.com>

* Pull grid rows and group to component

* Use grid rows group in vertical bar chart and histogram

* Pull shared vertical chart hooks into single hook

Co-authored-by: John Conroy <john-conroy@users.noreply.github.com>
Co-authored-by: Chuck McCallum <mccalluc@users.noreply.github.com>

* John conroy/sort cells charts by value (#2918)

* Pull longest label measurement to hook

* Adjust bottom margin based on longest x axis tick label

* Fix x scale band in dataset cluster chart

* Rotate axis tick labels

* Remove unused state from chart tooltip hook

* Add tick label tooltip

* Refactor tooltip

* Trim tick label strings

* Add offset for rotated histogram labels

* Add changelog

* Update histogram margin

* Sort cluster chart on x axis by values

* Add changelog

* Use helper func per code suggestion

* Add test

Co-authored-by: John Conroy <john-conroy@users.noreply.github.com>

* Version bump to v0.53.2

* Update CHANGELOG

* Update typeservice to V3 (#2924)

* revert config changes: do not rely on anything outside

* Add type service to status page

* TYPE_SERVICE_PATH

* update comment and changelog

* python-linting

* Formerly, the type service was not exposed on the front end... now that it is on the service page, we need a placeholder value

* version index for ccf (#2927)

* Limit organ-info datasets to HRA-mapped HuBMAP data only (#2930)

* Limit organ-info datasets to HRA-mapped HuBMAP data only

* Create CHANGELOG-organ-info-data.md

* linewrap

* Bump CCF-UI organ-info version to 3.5.0

Co-authored-by: mccalluc <mccalluc@users.noreply.github.com>

* Make "citing HuBMAP" an outbound link (#2931)

Co-authored-by: John Conroy <62477388+john-conroy@users.noreply.github.com>
Co-authored-by: John Conroy <john-conroy@users.noreply.github.com>
Co-authored-by: Bruce W. Herr II <bherr@indiana.edu>
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

3 participants