v1.9 Consolidated GHA and OTTR-fying beta

Wiki/Documentation updates

• ottrfying has been documented: https://www.ottrproject.org/ottr-fy.html though it still needs more testing
• Customizing Docker has more details added: https://www.ottrproject.org/customize-docker.html
• Issue templates have been updated to reflect ottrproject.org links instead of Wiki

Template/style changes:

• A Fred Hutch style set has been added with funfetti!

Github action changes:

• The Github checks are now consolidated on their own repository so that less code is needed in pull_request.yml
• This will also mean less syncs will be needed because as changes to https://github.com/jhudsl/ottr-reports they will be published and accessible without changes to an OTTR repository's code.
• URL checker wasn't properly identifying all 404s but now it should!

Docker image updates:

• All docker images related files are are now stored in https://github.com/jhudsl/ottr_docker
• jhudsl/course_template has now been renamed jhudsl/base_ottr

What's Changed

• Update Staging branch with what's in main by @cansavvy in #438
• Consolidate and config a pull request GHA by @cansavvy in #448
• Consolidate and config a rendering GHA by @cansavvy in #449
• Fix false URL finds by @cansavvy in #521
• Update sync.yml for AnviL Template script accomodation by @cansavvy in #522
• Polishing url-check.R by @cansavvy in #523
• Boxes by @carriewright11 in #524
• Boxes by @carriewright11 in #525
• make an AnVIL_Template group in sync.yml by @KatherineCox in #527
• Boxes by @carriewright11 in #529
• Update sync.yml by @cansavvy in #526
• Update sync.yml to have jhudsl/Choosing_Genomics_Tools by @cansavvy in #530
• Update sync list for AnVIL_Template by @KatherineCox in #538
• Branches sometimes overwrite each other - trying to fix by @cansavvy in #537
• clean and consolidate styling for callout boxes by @KatherineCox in #541
• Update transfer-rendered-files.yml - specify docker image by @cansavvy in #542
• Style documentation update for boxes by @carriewright11 in #544
• Add styler to render all workflow by @avahoffman in #546
• Bump create-issue-from-file action by @avahoffman in #552
• Delete style-sets/AnVIL directory by @KatherineCox in #553
• Remove AnVIL repos from sync by @avahoffman in #555
• Update sync.yml by @KatherineCox in #554
• remove GDSCN style-set by @KatherineCox in #560
• Create super bare bones theme for fhdasl stuff by @avahoffman in #556
• Get 404s properly by @cansavvy in #564
• Add pull-request.yml to use report-maker.yml here by @cansavvy in #513
• Call report-maker.yml from here by @cansavvy in #565
• Update links in automatic issues by @KatherineCox in #567
• switch the name and refs of course_template to base_ottr by @cansavvy in #569
• Clear out newly unneeded files by @cansavvy in #571
• Add funfetti themeing by @avahoffman in #566
• Refresh preview branch each time by @cansavvy in #573
• Have transfer-rendered-files.yml transfer the _bookdown.yml file by @cansavvy in #574

Full Changelog: 1.8.1...1.9