-
Notifications
You must be signed in to change notification settings - Fork 1.3k
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
ENH: Improve make_head_surface options #10592
Conversation
* upstream/main: MRG: Add "highlight" parameter to Evoked.plot() to conveniently highlight time periods (mne-tools#10614) MRG: Allow to pass array of "average" values to plot_evoked_topomap() (mne-tools#10610) fix: snirf length units (mne-tools#10613) minor, doc: fix subplot titles in tutorial (mne-tools#10607) Display averaged time period in Evoked topomap title (mne-tools#10606) MAINT: Fix for pydata-sphinx-theme [skip azp][skip actions][circle deploy] (mne-tools#10605) DOC: report.add_html in tutorial (mne-tools#10603) Broader support of the SNIRF file format and enable reading GowerLab data (mne-tools#10555) MRG: Recommend mamba instead of libmamba for installation (mne-tools#10597) Fix dev documentation warning [skip azp][skip actions] (mne-tools#10599) FIX cmap (mne-tools#10593) [ENH, MRG] Add interpolate bridged electrodes function (mne-tools#10587)
Okay this is ready for review/merge from my end! |
* upstream/main: [ENH] Add sys info for mne-icalabel (mne-tools#10615)
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
note that pymeshfix is GPL licensed. Is this the first precedent in mne-python?
Argh I did not notice :( I've removed it and just noted it as a possible way to deal with bad meshes in a tutorial. BTW my fix in the end for my bad |
* upstream/main: (24 commits) Use less memory when loading EDF file (mne-tools#10638) BUG: fix ipython console accessibility after MNEQtBrowser in Spyder (mne-tools#10637) WIP: Fix mne.time_frequency.multitaper Nyquist adjustment slightly incorrect (mne-tools#10541) BUG: Fix bug with fNIRS reordering (mne-tools#10630) MNT: PyQt6 for pip pre 3.10 (mne-tools#10636) CI: Fix conda (mne-tools#10628) MRG: Update installer links to point to 1.0.3_0 (mne-tools#10622) [BUG, MRG] fix info write access (mne-tools#10626) [MRG] Fixed group_by titles in evoked_plot. (mne-tools#10618) [BUG, MRG] Replace image_interp with interpolation in topomap plot arguments (mne-tools#10617) MAINT: Fix timeout (mne-tools#10624) Simplify mne-tools#10619 (mne-tools#10620) Drop EEG rejection thresholds when replacing EEG with CSD channels (mne-tools#10619) Add get_montage support for fNIRS (mne-tools#10611) ENH: Improve make_head_surface options (mne-tools#10592) [ENH, MRG] Add citation for intracranial JOSS paper (mne-tools#10616) [ENH] Add sys info for mne-icalabel (mne-tools#10615) MRG: Add "highlight" parameter to Evoked.plot() to conveniently highlight time periods (mne-tools#10614) MRG: Allow to pass array of "average" values to plot_evoked_topomap() (mne-tools#10610) fix: snirf length units (mne-tools#10613) ...
threshold
andmri
tomake_head_surface
to allow using a different MRI (with a different threshold) usingmkheadsurf
.make_head_surface
.fix_topology
to allow fixing topology withpymeshfix
.vtk
imports usingvtkmodules
.head-dense.fif
andhead-sparse.fif
when available (over-head.fif
orouter_skin.surf
) since these are more likely to be more accurate / better, asmake_scalp_surfaces
is more configurable thanwatershed_bem
.Todo:
vtk
imports to usevtkmodules