entrypoint-aws-batch: Upload .snakemake/metadata/ too #220
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Snakemake stores state information per input/output here and uses it to determine if it needs to re-run rules or not. It seems akin to the file mtimes which we already take care to preserve on upload/download. Additionally, the metadata recorded is used in Snakemake's report generation and is generally useful for looking at workflow statistics. Continue to not upload all of .snakemake/ en masse because it can potentially contain files that interfere with local usage and/or are large and unnecessary. Resolves: <nextstrain/cli#373> Related-to: <nextstrain/cli#374>
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tsibley
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Jun 17, 2024
Snakemake stores state information per input/output here and uses it to determine if it needs to re-run rules or not. It seems akin to the file mtimes which we already take care to preserve on upload/download. Additionally, the metadata recorded is used in Snakemake's report generation and is generally useful for looking at workflow statistics. Continue to not download all of .snakemake/ en masse because it can potentially contain files that interfere with local usage and/or are large and unnecessary. Resolves: <#373> Related-to: <nextstrain/docker-base#220>
tsibley
added a commit
to nextstrain/cli
that referenced
this pull request
Jun 17, 2024
Snakemake stores state information per input/output here and uses it to determine if it needs to re-run rules or not. It seems akin to the file mtimes which we already take care to preserve on upload/download. Additionally, the metadata recorded is used in Snakemake's report generation and is generally useful for looking at workflow statistics. Continue to not download all of .snakemake/ en masse because it can potentially contain files that interfere with local usage and/or are large and unnecessary. Resolves: <#373> Related-to: <nextstrain/docker-base#220>
joverlee521
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Jun 17, 2024
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Worked as expected in testing with nextstrain/cli#374 (review)
tsibley
added a commit
to nextstrain/cli
that referenced
this pull request
Jun 17, 2024
Snakemake stores state information per input/output here and uses it to determine if it needs to re-run rules or not. It seems akin to the file mtimes which we already take care to preserve on upload/download. Additionally, the metadata recorded is used in Snakemake's report generation and is generally useful for looking at workflow statistics. Continue to not download all of .snakemake/ en masse because it can potentially contain files that interfere with local usage and/or are large and unnecessary. Resolves: <#373> Related-to: <nextstrain/docker-base#220>
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Hah, totally forgot that ncov-ingest uses another Docker image. Triggered the ncov-ingest update-image workflow |
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Snakemake stores state information per input/output here and uses it to determine if it needs to re-run rules or not. It seems akin to the file mtimes which we already take care to preserve on upload/download. Additionally, the metadata recorded is used in Snakemake's report generation and is generally useful for looking at workflow statistics.
Continue to not upload all of .snakemake/ en masse because it can potentially contain files that interfere with local usage and/or are large and unnecessary.
Resolves: nextstrain/cli#373
Related-to: nextstrain/cli#374
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