318 update for tes compliance #1026
GitHub Actions / JUnit Test Report
failed
Sep 17, 2024 in 0s
1 tests run, 0 passed, 0 skipped, 1 failed.
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github-actions / JUnit Test Report
nf.Parameters: --nf_core_pipeline taxprofiler
Assertion failed:
1 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.08.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-9e1b6d5563ebb0aa07d6d5a25e02e8c1.nf` [shrivelled_spence] DSL2 - revision: 68dcf2aadf
Downloading plugin nf-validation@1.1.3
[59/2843f5] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[32/b19663] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[03/a153a1] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[a0/ad7a5e] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[59/7ad95d] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[57/c3e47e] Submitted process > SRA:SRA_FASTQ_FTP (ERX1234253_ERR1160846)
[77/677960] Submitted process > SRA:SRA_FASTQ_FTP (DRX026011_DRR028935)
[d7/178b55] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[cf/764232] Submitted process > SRA:SRA_TO_SAMPLESHEET (ERX1234253_ERR1160846)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[06/0fd5f5] Submitted process > SRA:SRA_FASTQ_FTP (SRX6725035_SRR9984183)
[b0/49f088] Submitted process > SRA:SRA_TO_SAMPLESHEET (DRX026011_DRR028935)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[b6/bb7633] Submitted process > SRA:SRA_TO_SAMPLESHEET (SRX6725035_SRR9984183)
[38/3868b3] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG (1)
WARN: Process `SRA:MULTIQC_MAPPINGS_CONFIG` publishDir path contains a variable with a null value
Nextflow stderr:
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