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318 update for tes compliance #1026

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318 update for tes compliance

318 update for tes compliance #1026

GitHub Actions / JUnit Test Report failed Sep 17, 2024 in 0s

1 tests run, 0 passed, 0 skipped, 1 failed.

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Check failure on line 1 in nf

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@github-actions github-actions / JUnit Test Report

nf.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ... 

Assertion failed: 

1 of 3 assertions failed
Raw output 
Nextflow stdout:

N E X T F L O W  ~  version 24.08.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-e36786a8f1da0f83f92e292c6c724132.nf` [sick_mercator] DSL2 - revision: 68dcf2aadf
Downloading plugin nf-validation@1.1.3
[2a/4d3596] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[ab/f689f4] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[fb/aec6f4] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[c3/7a57de] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[44/642f59] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[b3/94b1a4] Submitted process > SRA:SRA_FASTQ_FTP (SRX6725035_SRR9984183)
[ec/d18e7a] Submitted process > SRA:SRA_FASTQ_FTP (DRX026011_DRR028935)
[a5/359fe9] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[28/6aacdb] Submitted process > SRA:SRA_TO_SAMPLESHEET (DRX026011_DRR028935)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[16/c2eb33] Submitted process > SRA:SRA_TO_SAMPLESHEET (SRX6725035_SRR9984183)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[f5/7de4f8] Submitted process > SRA:SRA_FASTQ_FTP (ERX1234253_ERR1160846)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[97/dc157c] Submitted process > SRA:SRA_TO_SAMPLESHEET (ERX1234253_ERR1160846)
[5f/077a79] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG (1)
WARN: Process `SRA:MULTIQC_MAPPINGS_CONFIG` publishDir path contains a variable with a null value
Nextflow stderr:
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