Skip to content
nf-core CI

318 update for tes compliance #1026

Sign in to view logs

318 update for tes compliance

318 update for tes compliance #1026

GitHub Actions / JUnit Test Report failed Sep 17, 2024 in 0s

1 tests run, 0 passed, 0 skipped, 1 failed.

Annotations

Check failure on line 1 in nf

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

nf.Parameters: --nf_core_pipeline atacseq 

Assertion failed: 

1 of 3 assertions failed
Raw output 
Nextflow stdout:

N E X T F L O W  ~  version 24.08.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-b770e146303f25e478e00e5aed7bbe13.nf` [amazing_mirzakhani] DSL2 - revision: 68dcf2aadf
Downloading plugin nf-validation@1.1.3
[7f/01731e] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[20/2c574c] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[58/abd049] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[d7/64fe20] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[0a/471a23] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[13/429026] Submitted process > SRA:SRA_FASTQ_FTP (ERX1234253_ERR1160846)
[15/6413c3] Submitted process > SRA:SRA_FASTQ_FTP (DRX026011_DRR028935)
[6a/dd5794] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[10/1b4815] Submitted process > SRA:SRA_TO_SAMPLESHEET (ERX1234253_ERR1160846)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[af/f5a04f] Submitted process > SRA:SRA_FASTQ_FTP (SRX6725035_SRR9984183)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[a6/8fdc79] Submitted process > SRA:SRA_TO_SAMPLESHEET (DRX026011_DRR028935)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[ec/af78d0] Submitted process > SRA:SRA_TO_SAMPLESHEET (SRX6725035_SRR9984183)
[62/bf6de8] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG (1)
WARN: Process `SRA:MULTIQC_MAPPINGS_CONFIG` publishDir path contains a variable with a null value
Nextflow stderr:
View more details on GitHub Actions