Skip to content

Actions: nf-core/sarek

All workflows

Actions

Loading...
Loading

Showing runs from all workflows
11,065 workflow runs
11,065 workflow runs

Filter by Event

Filter by Status

Filter by Branch

Filter by Actor

Close user-tagged issues and PRs
Close user-tagged issues and PRs #82: Scheduled
December 29, 2024 00:33 11s master
December 29, 2024 00:33 11s
Add an option to optionally use the GATK VariantFiltration instead of VQSR
Fix linting from a comment #2826: Issue comment #1586 (comment) created by Ons14
December 27, 2024 09:49 1s
December 27, 2024 09:49 1s
How to implement sarek for plant variant calling?
Fix linting from a comment #2825: Issue comment #1736 (comment) created by meng-hhh
December 25, 2024 08:51 2s
December 25, 2024 08:51 2s
Unable to run sarek workflow in AWS health omics
Fix linting from a comment #2824: Issue comment #1458 (comment) created by moe1619
December 24, 2024 22:41 2s
December 24, 2024 22:41 2s
Close user-tagged issues and PRs
Close user-tagged issues and PRs #81: Scheduled
December 22, 2024 00:32 15s master
December 22, 2024 00:32 15s
Important! Template update for nf-core/tools v3.1.0
Fix linting from a comment #2823: Issue comment #1759 (comment) created by nf-core-bot
December 20, 2024 13:56 2s
December 20, 2024 13:56 2s
Important! Template update for nf-core/tools v3.1.1
nf-core template version comment #280: Pull request #1764 opened by nf-core-bot
December 20, 2024 13:56 46s
December 20, 2024 13:56 46s
increase memory for fgbio
Fix linting from a comment #2822: Issue comment #1584 (comment) created by SPPearce
December 19, 2024 15:02 3s
December 19, 2024 15:02 3s
feat: Add linting of FASTQ with FQ/LINT
Fix linting from a comment #2821: Issue comment #1763 (comment) created by maxulysse
December 18, 2024 10:59 3s
December 18, 2024 10:59 3s
feat: Add linting of FASTQ with FQ/LINT
Fix linting from a comment #2820: Issue comment #1763 (comment) created by adamrtalbot
December 18, 2024 10:06 2s
December 18, 2024 10:06 2s
nf-core linting comment
nf-core linting comment #15512: completed by Patricie34
December 18, 2024 09:39 4m 59s
December 18, 2024 09:39 4m 59s
nf-core linting comment
nf-core linting comment #15511: in_progress by Patricie34
December 18, 2024 09:36 7m 8s
December 18, 2024 09:36 7m 8s
nf-core linting comment
nf-core linting comment #15510: requested by Patricie34
December 18, 2024 09:36 7m 17s
December 18, 2024 09:36 7m 17s
Sarek bcftools normalization
pytest-workflow #234: Pull request #1682 synchronize by Patricie34
December 18, 2024 09:36 18m 41s Patricie34:sarek_bcftools_norm
December 18, 2024 09:36 18m 41s
Sarek bcftools normalization
nf-core linting #6973: Pull request #1682 synchronize by Patricie34
December 18, 2024 09:36 2m 32s Patricie34:sarek_bcftools_norm
December 18, 2024 09:36 2m 32s
Sarek bcftools normalization
nf-core CI #6650: Pull request #1682 synchronize by Patricie34
December 18, 2024 09:36 25m 8s Patricie34:sarek_bcftools_norm
December 18, 2024 09:36 25m 8s
Sarek bcftools normalization
nf-core template version comment #279: Pull request #1682 synchronize by Patricie34
December 18, 2024 09:36 45s
December 18, 2024 09:36 45s
Implemented TMB score calculation
Fix linting from a comment #2819: Issue comment #1738 (comment) created by Patricie34
December 18, 2024 08:57 3s
December 18, 2024 08:57 3s
Implemented TMB score calculation
Fix linting from a comment #2818: Issue comment #1738 (comment) created by bounlu
December 18, 2024 08:15 3s
December 18, 2024 08:15 3s
Implemented TMB score calculation
Fix linting from a comment #2817: Issue comment #1738 (comment) created by Patricie34
December 18, 2024 07:45 2s
December 18, 2024 07:45 2s
nf-core linting comment
nf-core linting comment #15509: completed by Patricie34
December 18, 2024 05:44 17s
December 18, 2024 05:44 17s
nf-core linting comment
nf-core linting comment #15508: in_progress by Patricie34
December 18, 2024 05:42 13s
December 18, 2024 05:42 13s
nf-core linting comment
nf-core linting comment #15507: requested by Patricie34
December 18, 2024 05:42 17s
December 18, 2024 05:42 17s
Sarek bcftools normalization
pytest-workflow #233: Pull request #1682 synchronize by Patricie34
December 18, 2024 05:42 12m 30s Patricie34:sarek_bcftools_norm
December 18, 2024 05:42 12m 30s
Sarek bcftools normalization
nf-core linting #6972: Pull request #1682 synchronize by Patricie34
December 18, 2024 05:42 2m 19s Patricie34:sarek_bcftools_norm
December 18, 2024 05:42 2m 19s