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Pull requests: nf-core/sarek

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Pull requests list

Add nf-test sharding CI
#1668 opened Oct 1, 2024 by edmundmiller • Draft
11 tasks
@edmundmiller
1
Try to simplify params.tools usage
#1667 opened Sep 30, 2024 by maxulysse Loading…
11 tasks
1
[DRAFT] Add telseq "a software that estimates telomere length "
#1665 opened Sep 26, 2024 by lindenb Loading…
6 of 11 tasks
Check if flowcell id matches for paired samples
#1664 opened Sep 26, 2024 by pmoris Loading…
4 of 11 tasks
1
Massive conda update
#1663 opened Sep 23, 2024 by maxulysse Loading…
11 tasks
2
Add deepsomatic tool
#1647 opened Sep 10, 2024 by vaxyzek • Draft
11 tasks
2
Asmultipcf implementation for multi-sample ASCAT CNV calling
#1646 opened Sep 4, 2024 by alexanderchang1 Loading…
8 tasks done
Identified a WES ASCAT Error and updated documentation
#1638 opened Aug 29, 2024 by alexanderchang1 Loading…
2 tasks done
4
Fix: Update variant calling tool - data type table in docs
#1635 opened Aug 28, 2024 by famosab Loading…
2 of 11 tasks
1
2
Fix: Convert bcf_annotations.tbi from empty() to value channel to prevent stalling
#1624 opened Aug 16, 2024 by bounlu Loading…
3
added indexcov : finding large INDEL using the BAI index
#1613 opened Aug 5, 2024 by lindenb Loading…
8 of 10 tasks
24
add_dysgu_sarek
#1590 opened Jul 11, 2024 by poddarharsh15 Loading…
11 tasks
14
increase memory for fgbio
#1584 opened Jul 9, 2024 by bounlu Loading…
3 of 11 tasks
3
vardictjava variant calling workflow
#1582 opened Jul 3, 2024 by eolaniru Loading…
11 tasks
12
Update Sentieon Docs
#1579 opened Jul 1, 2024 by edmundmiller Loading…
@edmundmiller
4
build: Remove all the env_names
#1564 opened Jun 12, 2024 by edmundmiller • Draft
@edmundmiller
2
Split variantannotation in its own pipeline and import it
#1561 opened Jun 11, 2024 by maxulysse Loading…
11 tasks
7
WIP: Add sentieon tnseq
#1497 opened May 3, 2024 by SPPearce • Draft
1
Added Minimap2 alignment
#1486 opened Apr 25, 2024 by EgorGuga Loading…
8 of 10 tasks
9
Add module bcftools/norm to sarek (in progress)
#1483 opened Apr 25, 2024 by JC-Delmas Loading…
1 of 11 tasks
11
feat(nf-boost): add boost.cleanup = true
#1479 opened Apr 23, 2024 by maxulysse • Draft
11 tasks
5
feat(nf-schema): remove nf-validation and update to nf-schema
#1478 opened Apr 22, 2024 by maxulysse Loading…
11 tasks
5
[WIP] Benchmarking per pipeline / POC
#1448 opened Mar 22, 2024 by famosab • Draft
10 tasks
@famosab
2
Parabricks alignment help wanted Extra attention is needed
#1444 opened Mar 20, 2024 by Furentsu • Draft
10 tasks
@Furentsu
6
Sambamba
#1368 opened Dec 29, 2023 by stavgrossfeld • Draft
10 tasks
2
ProTip! What’s not been updated in a month: updated:<2024-09-01.