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261 Open 464 Closed
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Issues list

How to implement sarek for plant variant calling？ enhancement New feature or request
#1736 opened Nov 19, 2024 by meng-hhh
1
No output and no run for variant calling bug Something isn't working
#1735 opened Nov 19, 2024 by dazauzai
strange bug, two reverse conclusion are shown out at the same run bug Something isn't working
#1732 opened Nov 15, 2024 by dazauzai
5
Error running Control-FREEC on WXS data bug Something isn't working
#1726 opened Nov 6, 2024 by danro9685
1
Unable to start bug Something isn't working
#1725 opened Nov 5, 2024 by dbarras2
5
question regarding computational power
#1724 opened Nov 4, 2024 by mggrami
1
the vcf file from haplotypecaller was not annotated by snpeff and vep bug Something isn't working
#1722 opened Nov 2, 2024 by ybdong919
2
how to use custom vep database for microbe, such as Candian.aruis bug Something isn't working
#1720 opened Oct 31, 2024 by ybdong919
Provide default UMI/trimming library specific values enhancement New feature or request
#1719 opened Oct 31, 2024 by maxulysse
The target server failed to respond bug Something isn't working
#1718 opened Oct 30, 2024 by torres-HI
1
Tutorial: long reads analysis enhancement New feature or request
#1717 opened Oct 30, 2024 by lescai
Check if flowcell id is uniform in a fastq file enhancement New feature or request
#1716 opened Oct 30, 2024 by pmoris
Add library metadata and extend read group info enhancement New feature or request
#1715 opened Oct 30, 2024 by pmoris
Tutorial: UMI enhancement New feature or request
#1714 opened Oct 30, 2024 by FriederikeHanssen
Tutorial: CNV calling enhancement New feature or request
#1713 opened Oct 30, 2024 by FriederikeHanssen
Proposals for Sarek Tutorials on use-cases docs help wanted Extra attention is needed testing
#1704 opened Oct 28, 2024 by lescai
3
Shard 5 : Error: no valid tests found bug Something isn't working
#1703 opened Oct 28, 2024 by maxulysse
Remove pytest-workflow
#1700 opened Oct 28, 2024 by edmundmiller
Get a full nf-test report in cis
#1699 opened Oct 28, 2024 by edmundmiller
1
Hackathon Items
#1697 opened Oct 28, 2024 by edmundmiller
vep_loftee doesn't add the expected columns to INFO/CSQ bug Something isn't working
#1691 opened Oct 21, 2024 by MahShaaban
2
Problem with intervals file
#1690 opened Oct 20, 2024 by Eduardo-Auer
3
Haplotypecaller exit status 402
#1687 opened Oct 14, 2024 by janejajajuana
5
No status is 0 - but contains tumor only sample error message bug Something isn't working
#1685 opened Oct 11, 2024 by maxulysse
4
Issue: FASTQC Process Fails with Exit Code 140 in nf-core/sarek Pipeline Using Singularity bug Something isn't working
#1683 opened Oct 10, 2024 by SirAymane
ProTip! Exclude everything labeled bug with -label:bug.