Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

No status is 0 - but contains tumor only sample error message #1685

Open
maxulysse opened this issue Oct 11, 2024 · 4 comments
Open

No status is 0 - but contains tumor only sample error message #1685

maxulysse opened this issue Oct 11, 2024 · 4 comments
Labels
bug Something isn't working

Comments

@maxulysse
Copy link
Member

Description of the bug

The sample-sheet only contains tumor-samples, but the following tools, which were requested by the option "tools", expect at least one normal-sample : deepvariant, haplotypecaller

while running with a samplesheet with no status and these tools

Command used and terminal output

No response

Relevant files

No response

System information

No response

@maxulysse maxulysse added the bug Something isn't working label Oct 11, 2024
@maxulysse
Copy link
Member Author

I believe this is following the TEMPLATE sync

@AntonioRezende
Copy link

I am having exactly the same issue. Any update on that?

@asp8200
Copy link
Contributor

asp8200 commented Nov 11, 2024

Could it be another case of this ?

Do you see any other error messages besides the one related to the sample-sheet?

@AntonioRezende
Copy link

I didn't see any other error message printed, but I checked the link you sent and followed the suggestion of changing the NextFlow version, then it worked.
Thanks!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug Something isn't working
Projects
None yet
Development

No branches or pull requests

3 participants