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$ nf-core download ,--./,-. ___ __ __ __ ___ /,-._.--~\ |\ | |__ __ / ` / \ |__) |__ } { | \| | \__, \__/ | \ |___ \`-._,-`-, `._,._,' nf-core/tools version 2.2Specify the name of a nf-core pipeline or a GitHub repository name (user/repo).? Pipeline name: rnaseq? Select release / branch: 3.5 [release]In addition to the pipeline code, this tool can download software containers.? Download software container images: singularityIf transferring the downloaded files to another system, it can be convenient to have everything compressed in a single file.This is not recommended when downloading Singularity images, as it can take a long time and saves very little space.? Choose compression type: noneINFO Saving 'nf-core/rnaseq' download.py:160 Pipeline revision: '3.5' Pull containers: 'singularity' Using $NXF_SINGULARITY_CACHEDIR': /home/harshil/containers/singularity Output directory: 'nf-core-rnaseq-3.5' INFO Downloading workflow files from GitHub download.py:163INFO Downloading centralised configs from GitHub download.py:167INFO Found 1 container download.py:472Pulling singularity images ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 0% • 0/1 completed${ workflow.containerEngine == Copying from cache to target directory ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━CRITICAL [Errno 2] No such file or directory: '/home/harshil/containers/singularity/${ workflow.containerEngine == .img' download.py:182(nf-core) ~/testing
The regex in the nf-core download script will need to be updated (and to be backward compatible).
Command used and terminal output
Try running nf-core download to fetch Singularity containers for v3.5 of nf-core/rnaseq.
The text was updated successfully, but these errors were encountered:
Description of the bug
The regex in the nf-core download script will need to be updated (and to be backward compatible).
Command used and terminal output
Try running
nf-core download
to fetch Singularity containers for v3.5 of nf-core/rnaseq.The text was updated successfully, but these errors were encountered: