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initial working version of refgenie integration #1090

Merged
merged 21 commits into from
Jul 6, 2022
Merged

initial working version of refgenie integration #1090

merged 21 commits into from
Jul 6, 2022

Commits on May 19, 2021

  1. initial working version of refgenie integration

    @KevinMenden
    KevinMenden committed May 19, 2021
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  2. black, cleaned up code

    @KevinMenden
    KevinMenden committed May 19, 2021
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  3. black

    @KevinMenden
    KevinMenden committed May 19, 2021
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Commits on May 21, 2021

  1. removed rich logging

    @KevinMenden
    KevinMenden committed May 21, 2021
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Commits on May 25, 2021

  1. added refgenie test

    @KevinMenden
    KevinMenden committed May 25, 2021
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  2. black

    @KevinMenden
    KevinMenden committed May 25, 2021
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  3. fixed issues with refgenie test

    @KevinMenden
    KevinMenden committed May 25, 2021
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  4. move refgenie to dev

    @KevinMenden
    KevinMenden committed May 25, 2021
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Commits on Jun 20, 2022

  1. Merge branch 'dev' of github.com:nf-core/tools into refgenie

    @ErikDanielsson
    ErikDanielsson committed Jun 20, 2022
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Commits on Jun 30, 2022

  1. Merge branch 'dev' into refgenie

    @mirpedrol
    mirpedrol authored Jun 30, 2022
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  2. fix merge conflicts

    @mirpedrol
    mirpedrol committed Jun 30, 2022
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  3. fix merge conflicts

    @mirpedrol
    mirpedrol committed Jun 30, 2022
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  4. fix merge conflicts

    @mirpedrol
    mirpedrol committed Jun 30, 2022
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  5. fix merge conflicts

    @mirpedrol
    mirpedrol committed Jun 30, 2022
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  6. fix merge conflicts

    @mirpedrol
    mirpedrol committed Jun 30, 2022
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  7. fix merge conflicts

    @mirpedrol
    mirpedrol committed Jun 30, 2022
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  8. move refgenie to dev

    @KevinMenden @mirpedrol
    KevinMenden authored and mirpedrol committed Jun 30, 2022
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  9. fix my mess with conflicts

    @mirpedrol
    mirpedrol committed Jun 30, 2022
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Commits on Jul 4, 2022

  1. update NXF_HOME env var in refgenie tests

    @mirpedrol
    mirpedrol committed Jul 4, 2022
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Commits on Jul 5, 2022

  1. apply suggestions from code review

    @mirpedrol
    mirpedrol committed Jul 5, 2022
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Commits on Jul 6, 2022

  1. update string format and fix problem with brackets

    @mirpedrol
    mirpedrol committed Jul 6, 2022
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