Code

Modules restructure#1859

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mirpedrol merged 29 commits intodevnf-core/tools:devfrom modules-restructurenf-core/tools:modules-restructureCopy head branch name to clipboardOct 4, 2022

+787-517

Commits

Commits on Sep 26, 2022

• change path for testing module structure

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• change module folder structure from pipeline template

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• change path from pipeline template

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• change path from module_utils

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• change paths added to pytest_modules.yml

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• modify modules create command

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• fix create-test-yml

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• add variables to ModuleCommand

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Commits on Sep 27, 2022

• fix paths for linting modules

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• fix paths for bump-versions

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• try to add any custom folder as nf-core inside modules

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• modules_json.py working (hopefully)

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• lint bug fixed but lint not passing :(

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Commits on Sep 30, 2022

• pipeline linting passing

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• modify modules structure with two levels modules/nf-core or modules/custom_dir

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Commits on Oct 1, 2022

• fix some pytests

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Commits on Oct 2, 2022

• more tests fixed

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Commits on Oct 3, 2022

• fix sha tests

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  f7bdf41

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• fix gitlab workflow

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• fix linting

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• gitlab force

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• fix yaml sha

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• fix isort

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• Merge branch 'dev' into modules-restructure

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Commits on Oct 4, 2022

• remove branch and url from specific modules command

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• update changelog

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• change nf-core/modules branch to master

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• change sha for master branch

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• update custom/dumpsoftwareversions to last commit

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