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Modules restructure #1859

Merged
merged 29 commits into from
Oct 4, 2022
Merged

Modules restructure #1859

merged 29 commits into from
Oct 4, 2022

Commits on Sep 26, 2022

  1. change path for testing module structure

    @mirpedrol
    mirpedrol committed Sep 26, 2022
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  2. change module folder structure from pipeline template

    @mirpedrol
    mirpedrol committed Sep 26, 2022
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  3. change path from pipeline template

    @mirpedrol
    mirpedrol committed Sep 26, 2022
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  4. change path from module_utils

    @mirpedrol
    mirpedrol committed Sep 26, 2022
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  5. change paths added to pytest_modules.yml

    @mirpedrol
    mirpedrol committed Sep 26, 2022
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  6. modify modules create command

    @mirpedrol
    mirpedrol committed Sep 26, 2022
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  7. fix create-test-yml

    @mirpedrol
    mirpedrol committed Sep 26, 2022
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  8. add variables to ModuleCommand

    @mirpedrol
    mirpedrol committed Sep 26, 2022
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Commits on Sep 27, 2022

  1. fix paths for linting modules

    @mirpedrol
    mirpedrol committed Sep 27, 2022
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  2. fix paths for bump-versions

    @mirpedrol
    mirpedrol committed Sep 27, 2022
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  3. try to add any custom folder as nf-core inside modules

    @mirpedrol
    mirpedrol committed Sep 27, 2022
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  4. modules_json.py working (hopefully)

    @mirpedrol
    mirpedrol committed Sep 27, 2022
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  5. lint bug fixed but lint not passing :(

    @mirpedrol
    mirpedrol committed Sep 27, 2022
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Commits on Sep 30, 2022

  1. pipeline linting passing

    @mirpedrol
    mirpedrol committed Sep 30, 2022
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  2. modify modules structure with two levels modules/nf-core or modules/c… 

    …ustom_dir
    @mirpedrol
    mirpedrol committed Sep 30, 2022
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Commits on Oct 1, 2022

  1. fix some pytests

    @mirpedrol
    mirpedrol committed Oct 1, 2022
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Commits on Oct 2, 2022

  1. more tests fixed

    @mirpedrol
    mirpedrol committed Oct 2, 2022
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Commits on Oct 3, 2022

  1. fix sha tests

    @mirpedrol
    mirpedrol committed Oct 3, 2022
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  2. fix gitlab workflow

    @mirpedrol
    mirpedrol committed Oct 3, 2022
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  3. fix linting

    @mirpedrol
    mirpedrol committed Oct 3, 2022
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  4. gitlab force

    @mirpedrol
    mirpedrol committed Oct 3, 2022
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  5. fix yaml sha

    @mirpedrol
    mirpedrol committed Oct 3, 2022
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  6. fix isort

    @mirpedrol
    mirpedrol committed Oct 3, 2022
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  7. Merge branch 'dev' into modules-restructure

    @mirpedrol
    mirpedrol authored Oct 3, 2022
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Commits on Oct 4, 2022

  1. remove branch and url from specific modules command

    @mirpedrol
    mirpedrol authored Oct 4, 2022
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  2. update changelog

    @mirpedrol
    mirpedrol committed Oct 4, 2022
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  3. change nf-core/modules branch to master

    @mirpedrol
    mirpedrol committed Oct 4, 2022
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  4. change sha for master branch

    @mirpedrol
    mirpedrol committed Oct 4, 2022
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  5. update custom/dumpsoftwareversions to last commit

    @mirpedrol
    mirpedrol committed Oct 4, 2022
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