Dev -> Master for v2.7

[mirpedrol]

PR checklist

• This comment contains a description of changes (with reason)
• CHANGELOG.md is updated
• If you've fixed a bug or added code that should be tested, add tests!
• Documentation in docs is updated

[mashehu]

Let's go!

[codecov]

Codecov Report

Merging #2107 (3121dab) into master (dec66ab) will increase coverage by 3.52%.
The diff coverage is 67.22%.

@@            Coverage Diff             @@
##           master    #2107      +/-   ##
==========================================
+ Coverage   64.44%   67.97%   +3.52%     
==========================================
  Files          35       43       +8     
  Lines        4180     5633    +1453     
==========================================
+ Hits         2694     3829    +1135     
- Misses       1486     1804     +318     

Impacted Files	Coverage Δ
nf_core/bump_version.py	89.47% <ø> (-0.19%)	⬇️
nf_core/lint/modules_structure.py	88.88% <ø> (ø)
nf_core/lint/multiqc_config.py	66.66% <ø> (ø)
nf_core/lint/pipeline_name_conventions.py	81.81% <ø> (ø)
nf_core/lint/pipeline_todos.py	94.11% <ø> (ø)
nf_core/lint/readme.py	75.75% <ø> (ø)
nf_core/lint/schema_description.py	67.85% <ø> (ø)
nf_core/lint/schema_lint.py	75.86% <ø> (ø)
nf_core/lint/schema_params.py	76.00% <ø> (ø)
nf_core/lint/template_strings.py	87.50% <ø> (ø)
... and 46 more

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[awgymer]

Should we add/expand docs on how to structure your own private modules repo and some of the possible gotchas?

I am thinking particularly regarding org_path in the .nf-core.yml and the risks of having two modules with the same name.

If these are already done and I missed it ignore me. Otherwise I could work on some tomorrow?

[mashehu]

Should we add/expand docs on how to structure your own private modules repo and some of the possible gotchas?

I am thinking particularly regarding org_path in the .nf-core.yml and the risks of having two modules with the same name.

If these are already done and I missed it ignore me. Otherwise I could work on some tomorrow?

Good idea, but I think these would be over at the nf-co.re repo and not needed here, right?

[awgymer]

Hmm maybe. I only reviewed the readme on the main page and there are some comments about private repos and needing a "structure" but nothing specific. I would probably at least link to wherever we will put them on nf-co.re

[mirpedrol]

We have some documentation on the readme. We could add a sentence about org_path. I opened a PR, please make all the changes that you consider 🙂 Then we can release 🚀