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Add Apptainer (Singularity) to Gitpod nf-core base image #2345

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merged 2 commits into from
Jun 29, 2023
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Add Apptainer (Singularity) to Gitpod nf-core base image #2345

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Add Apptainer (Singularity) to Gitpod nf-core base image.
MatthiasZepper Jun 27, 2023
ac6777a
Phil likes indentation 🤓
ewels Jun 29, 2023
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9 changes: 8 additions & 1 deletion nf_core/gitpod/gitpod.Dockerfile
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Expand Up @@ -3,6 +3,7 @@ FROM gitpod/workspace-base
USER root

# Install util tools.
# software-properties-common is needed to add ppa support for Apptainer installation
RUN apt-get update --quiet && \
apt-get install --quiet --yes \
apt-transport-https \
Expand All @@ -13,7 +14,13 @@ RUN apt-get update --quiet && \
wget \
curl \
tree \
graphviz
graphviz \
software-properties-common

# Install Apptainer (Singularity)
RUN add-apt-repository -y ppa:apptainer/ppa && \
apt-get update --quiet && \
apt install -y apptainer

# Install Conda
RUN wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh && \
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