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More build in species support (zebrafish, nematode ) #294

Merged
merged 10 commits into from
Dec 28, 2023
Merged

More build in species support (zebrafish, nematode ) #294

merged 10 commits into from
Dec 28, 2023

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y9c
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@y9c y9c commented Dec 28, 2023

Close #207

@iskandr iskandr merged commit 3b3ade8 into openvax:master Dec 28, 2023
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iskandr commented Dec 28, 2023

Thanks!

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y9c commented Dec 29, 2023

Thank you @iskandr. Could you release a new version for this? #295

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iskandr commented Dec 29, 2023 via email

iskandr added a commit that referenced this pull request Jan 10, 2024
@iskandr @y9c
Fix dependency chain broken by newer Polars versions (#293)
cc8fddc 
* use gtfparse 2.1.0

* added scripts for linting and running tests, renamed tests directory

* More build in species support (zebrafish, nematode ) (#294)

* Update ensembl_release_versions.py

* fix naming

* quick update

* add species

* use gtfparse 2.1.0

* added scripts for linting and running tests, renamed tests directory

* fixing tests which broke under pytest

* fixed refseq GTF

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Co-authored-by: Chang Y <yech1990@gmail.com>
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Species not found error
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@y9c @iskandr