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    16 repositories

    • CLIPn

      Public
      A contrastive learning approach for integration of high-content screens
      drug-discoverycontrastive-learningphenotypic-profiling
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Oct 18, 2024Oct 18, 2024

    • fus-als_profiling

      Public
      R
      •0•0•0•0•Updated Apr 30, 2024Apr 30, 2024

    • MUSE

      Public
      MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states for spatially resolved transcriptomics data.
      data-integrationspatial-transcriptomicssingle-cell-ananlysismulti-modal-analysisdeep-learningclusteringtensorflow
      Jupyter Notebook
      •
      MIT License
      •7•32•0•0•Updated May 10, 2022May 10, 2022

    • nsp_extension

      Public
      data analysis codes for manuscript "Analysis of growth cone extension in standardized coordinates highlights self-organization rules during wiring of the Drosophila visual system"
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Dec 5, 2021Dec 5, 2021

    • MuLANN

      Public
      Code and data of the "Multi-domain adversarial learning" paper, Schoenauer-Sebag et al., accepted at ICLR 2019
      Lua
      •
      GNU General Public License v3.0
      •7•38•2•0•Updated Jan 20, 2021Jan 20, 2021

    • MAGS

      Public
      Code for MAGS project
      Python
      •0•0•0•0•Updated Dec 5, 2020Dec 5, 2020

    • tet2-dynamics

      Public
      MATLAB
      •0•0•0•0•Updated Apr 20, 2020Apr 20, 2020

    • MultimodalPDXHeterogeneity

      Public
      MATLAB
      •0•0•0•0•Updated Oct 31, 2019Oct 31, 2019

    • scScope

      Public
      Python
      •12•48•1•0•Updated Jun 21, 2019Jun 21, 2019

    • EnteroidSeg

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 1, 2019Mar 1, 2019

    • ThorneChen2018

      Public
      Code for paper
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Mar 6, 2018Mar 6, 2018

    • SamplingForHeterogeneity

      Public
      MATLAB
      •0•1•0•0•Updated Aug 28, 2017Aug 28, 2017

    • PHOCOS

      Public
      Code for the paper "PHOCOS: Inferring Multi-Feature Phenotypic Crosstalk Networks " in Bioinformatics 2016
      MATLAB
      •0•0•0•0•Updated May 11, 2016May 11, 2016

    • On_Comparing_Heterogeneity_Across_Biomarkers

      Public
      MATLAB
      •0•0•0•0•Updated Oct 30, 2014Oct 30, 2014

    • phenoripper

      Public
      An easy to use, image analysis software package that enables rapid exploration and interpretation of microscopy data.
      MATLAB
      •
      Other
      •1•7•3•0•Updated Aug 23, 2014Aug 23, 2014

    • simucell

      Public
      An open-source framework to synthetically generate fluorescent microscopic images of cellular population.
      Objective-C
      •
      Other
      •3•10•0•0•Updated Nov 7, 2012Nov 7, 2012