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@JDACS4C-IMPROVE IMPROVE

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    59 repositories

    • IMPROVE

      Public
      Libraries and scripts for basic IMPROVE functionalities
      Python
      •
      MIT License
      •3•1•26•3•Updated Dec 23, 2024Dec 23, 2024

    • docs

      Public
      Python
      •
      MIT License
      •3•3•5•0•Updated Dec 20, 2024Dec 20, 2024

    • Scratch

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

    • mae_poly_loss

      Public
      MAE polynomial loss functions
      Python
      •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

    • UNO

      Public
      Standalone UNO repo for the IMPROVE project
      Python
      •1•0•2•2•Updated Dec 13, 2024Dec 13, 2024

    • DeepCDR

      Public
      Cancer Drug Response Prediction via a Hybrid Graph Convolutional Network
      Python
      •
      MIT License
      •26•0•5•0•Updated Dec 10, 2024Dec 10, 2024

    • PathDSP

      Public
      Explainable Drug Sensitivity Prediction through Cancer Pathway Enrichment Scores
      Python
      •
      MIT License
      •10•0•1•0•Updated Dec 9, 2024Dec 9, 2024

    • GraphDRP

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •19•1•3•0•Updated Nov 20, 2024Nov 20, 2024

    • tCNNS-Project

      Public
      twin CNN channels on drugs and cancer cell lines
      Python
      •9•0•2•0•Updated Nov 15, 2024Nov 15, 2024

    • HiDRA

      Public
      HiDRA
      Python
      •
      GNU General Public License v3.0
      •4•0•1•1•Updated Nov 13, 2024Nov 13, 2024

    • IGTD

      Public
      Image Generator for Tabular Data (IGTD): Converting Tabular Data to Images for Deep Learning Using Convolutional Neural Networks
      Python
      •
      MIT License
      •58•0•3•0•Updated Nov 1, 2024Nov 1, 2024

    • DeepTTC

      Public
      DeepTTC: a transformer-based model for predicting cancer drug response
      Python
      •9•0•2•0•Updated Oct 18, 2024Oct 18, 2024

    • LGBM

      Public
      Python
      •
      Apache License 2.0
      •0•0•4•0•Updated Oct 15, 2024Oct 15, 2024

    • DualGCN

      Public
      Python
      •
      MIT License
      •3•1•1•1•Updated Sep 11, 2024Sep 11, 2024

    • Paccmann_MCA

      Public
      PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction prediction
      Python
      •
      MIT License
      •18•1•2•0•Updated Sep 6, 2024Sep 6, 2024

    • HPO

      Public
      Setup and configs for HPO runs
      Jupyter Notebook
      •0•1•0•1•Updated Sep 3, 2024Sep 3, 2024

    • Sunspot

      Public
      Python
      •0•0•0•0•Updated Jul 26, 2024Jul 26, 2024

    • Singularity

      Public
      Singularity definitions that can be extended to support execution of community models.
      Shell
      •
      MIT License
      •5•3•17•3•Updated Jul 2, 2024Jul 2, 2024

    • DrugCell

      Public
      A visible neural network model for drug response prediction
      Jupyter Notebook
      •
      MIT License
      •55•0•3•1•Updated Jun 12, 2024Jun 12, 2024

    • DeepDDs

      Public
      Python
      •17•0•0•0•Updated Jun 10, 2024Jun 10, 2024

    • matchmaker

      Public
      Initial Commit
      Python
      •
      MIT License
      •10•0•0•0•Updated Jun 4, 2024Jun 4, 2024

    • DeepSynergy

      Public
      Jupyter Notebook
      •29•0•0•0•Updated Jun 3, 2024Jun 3, 2024

    • SDCNet

      Public
      Python
      •2•0•0•0•Updated May 31, 2024May 31, 2024

    • GAECDS

      Public
      Python
      •1•0•0•0•Updated May 14, 2024May 14, 2024

    • TGSA

      Public
      PyTorch implementation of <<TGSA: Protein-Protein Association-Based Twin Graph Neural Networks for Drug Response Prediction with Similarity Augmentation>>
      Python
      •
      MIT License
      •17•0•1•0•Updated Apr 5, 2024Apr 5, 2024

    • Benchmarks

      Public
      ECP-CANDLE Benchmarks
      Python
      •
      MIT License
      •83•0•2•1•Updated Mar 31, 2024Mar 31, 2024

    • .github

      Public
      Public README for organization
      0•0•0•0•Updated Mar 18, 2024Mar 18, 2024

    • BiG-DRP

      Public
      Python
      •3•0•1•1•Updated Feb 29, 2024Feb 29, 2024

    • DRPreter

      Public
      DRPreter: Interpretable Anticancer Drug Response Prediction Using Knowledge-Guided Graph Neural Networks and Transformer
      Python
      •
      MIT License
      •13•0•1•0•Updated Feb 12, 2024Feb 12, 2024

    • IMPROVE_LIB

      Public
      Libraries and scripts for basic IMPROVE functionalities
      Python
      •3•0•0•0•Updated Nov 14, 2023Nov 14, 2023