Skip to content

@grp-bork Bork Group at EMBL Heidelberg

Change the repository type filter

All

    Repositories list

    25 repositories

    • nIMP3

      Public
      Nextflow
      •1•0•0•0•Updated Dec 31, 2024Dec 31, 2024

    • spire

      Public
      Pipeline used to generate data on spire.embl.de
      Nextflow
      •2•5•0•0•Updated Dec 31, 2024Dec 31, 2024

    • ENA2eggNOG

      Public
      eggNOG mapper pipeline
      Nextflow
      •
      MIT License
      •0•1•0•0•Updated Dec 31, 2024Dec 31, 2024

    • nevermore_profiler

      Public
      Nextflow
      •
      MIT License
      •1•0•0•0•Updated Dec 31, 2024Dec 31, 2024

    • gunc_workflow

      Public
      GUNC pipeline
      Nextflow
      •
      MIT License
      •0•1•0•0•Updated Dec 31, 2024Dec 31, 2024

    • nHUMAnN

      Public
      Nextflow
      •
      MIT License
      •1•1•0•0•Updated Dec 31, 2024Dec 31, 2024

    • samestr_flow

      Public
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Dec 31, 2024Dec 31, 2024

    • reCOGnise

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 31, 2024Dec 31, 2024

    • MultiPath

      Public
      Nextflow
      •1•0•0•0•Updated Dec 31, 2024Dec 31, 2024

    • CellCount_Nishijima_2024

      Public
      R codes used to construct prediction models and prepare figures
      HTML
      •0•0•0•0•Updated Nov 29, 2024Nov 29, 2024

    • meta_eukaryome_detect

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 11, 2024Oct 11, 2024

    • formHTR

      Public
      Handprint text recognition in form documents.
      Python
      •
      MIT License
      •1•1•23•0•Updated Sep 30, 2024Sep 30, 2024

    • microbial_load_predictor

      Public
      R package to predict microbial loads
      R
      •0•11•1•0•Updated Aug 27, 2024Aug 27, 2024

    • enterotypes

      Public
      R
      •
      MIT License
      •1•5•1•0•Updated Aug 26, 2024Aug 26, 2024

    • metaTREC-curation

      Public
      0•0•6•0•Updated Jul 1, 2024Jul 1, 2024

    • drugbug_Santamarina_2023

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Jun 27, 2024Jun 27, 2024

    • gunc

      Public
      Python package for detection of chimerism and contamination in prokaryotic genomes.
      Python
      •
      GNU General Public License v3.0
      •8•68•8•2•Updated Nov 23, 2023Nov 23, 2023

    • spire_contribute

      Public
      0•3•7•0•Updated Aug 15, 2023Aug 15, 2023

    • gff_quantifier

      Public
      Python
      •
      MIT License
      •2•0•0•0•Updated Feb 14, 2023Feb 14, 2023

    • multiomics_Wuyts_2022

      Public
      R
      •
      MIT License
      •0•1•0•0•Updated Dec 7, 2022Dec 7, 2022

    • cdifficile_Ferretti_2022

      Public
      Meta-analysis of over 42k metagenomic samples to investigate Clostridioides difficile prevalence across age, geography, health and disease
      R
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Oct 5, 2022Oct 5, 2022

    • fmt_metastudy

      Public
      Analysis code for "Drivers and Determinants of Strain Dynamics Following Fecal Microbiota Transplantation" by Schmidt, Li et al
      R
      •
      GNU General Public License v3.0
      •1•2•0•0•Updated Jun 3, 2022Jun 3, 2022

    • ena-mirror

      Public
      Mirror selected ENA data locally
      Python
      •3•0•0•1•Updated May 6, 2022May 6, 2022

    • metadrugs_figures

      Public
      HTML
      •0•0•0•0•Updated Sep 8, 2021Sep 8, 2021

    • vpthemall

      Public
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Apr 26, 2021Apr 26, 2021