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Fix minor documentation formatting issues in dancing links #34567

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Kerl13 opened this issue Sep 21, 2022 · 8 comments
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Fix minor documentation formatting issues in dancing links #34567

Kerl13 opened this issue Sep 21, 2022 · 8 comments

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@Kerl13
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Kerl13 commented Sep 21, 2022

Component: documentation

Author: Martin Pépin

Branch: 1c9e627

Reviewer: Frédéric Chapoton

Issue created by migration from https://trac.sagemath.org/ticket/34567

@Kerl13 Kerl13 added this to the sage-9.8 milestone Sep 21, 2022
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Kerl13 commented Sep 21, 2022

Author: Martin Pépin

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Reviewer: Frédéric Chapoton

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comment:3

ok, feu vert

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vbraun commented Sep 29, 2022

Changed branch from u/MartinPepin/dancing_links_docs_formatting to 1c9e627

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Changed commit from 1c9e627 to none

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comment:5

Is it normal that build/pkgs/configure/checksums.ini and build/pkgs/configure/package-version.txt were modified in this ticket?

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comment:6

hmm, no. But this is the last commit that Volker has closed before the release.

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Kerl13 commented Sep 30, 2022

comment:7

These files are not modified on u/MartinPepin/dancing_links_docs_formatting at least.

By the way, what's the usual practice regarding merged branches? Can I remove the branch on trac or is there a policy to keep them?

vbraun pushed a commit that referenced this issue Mar 26, 2023
    
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### 📚 Description

Made small edits to the PR template, making it concise and tidy overall.

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URL: #35141
Reported by: Kwankyu Lee
Reviewer(s): Kwankyu Lee, Tobias Diez
vbraun pushed a commit that referenced this issue Apr 6, 2023
    
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Partial fix for pycodestyle E221, done using autopep8.

E221 multiple spaces before operator

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URL: #35355
Reported by: Frédéric Chapoton
Reviewer(s): Matthias Köppe
vbraun pushed a commit that referenced this issue Apr 6, 2023
    
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The update #35184 broke the docs
upload. Hopefully this is fixed with this PR.

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URL: #35356
Reported by: Tobias Diez
Reviewer(s): Dima Pasechnik, Kwankyu Lee
vbraun pushed a commit that referenced this issue Apr 6, 2023
    
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Follow-up from #35322.
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URL: #35366
Reported by: Matthias Köppe
Reviewer(s): Gonzalo Tornaría
vbraun pushed a commit that referenced this issue Apr 6, 2023
    
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### 📚 Description

This is a follow-up on:
- #35110

As preparation for #35322, which is changing more packages to implicit
namespace packages, we remove `.all` imports from these packages
throughout the Sage library.

This is part of:
- #29705

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- Depends on #35418
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URL: #35372
Reported by: Matthias Köppe
Reviewer(s): Gonzalo Tornaría
vbraun pushed a commit that referenced this issue Apr 6, 2023
    
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openblas 0.3.22 is broken, see:
- #35371
- scipy/scipy#18208
- OpenMathLib/OpenBLAS#3976

We reject it.

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URL: #35377
Reported by: Matthias Köppe
Reviewer(s): John H. Palmieri
vbraun pushed a commit that referenced this issue Apr 6, 2023
    
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`matrix_modn_dense_float.pyx` had single backticks in one of the
docstrings which was causing it to render as LaTeX text, while it was
intended to be monospace formatted. The missing backticks are added to
fix this.

Fixes #35363

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URL: #35382
Reported by: Karan Handa
Reviewer(s): Matthias Köppe
vbraun pushed a commit that referenced this issue Apr 6, 2023
    
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The source tarballs made by `make dist` contain a git repository.
We update the remotes.
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As discussed in https://groups.google.com/g/sage-devel/c/TsHnvmkdrR8
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URL: #35384
Reported by: Matthias Köppe
Reviewer(s): John H. Palmieri
vbraun pushed a commit that referenced this issue Apr 6, 2023
    
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Adding the command `sage --tox -e cython-lint`.
See https://pypi.org/project/cython-lint/

There are many failures, so it is not run by default.
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URL: #35385
Reported by: Matthias Köppe
Reviewer(s): Frédéric Chapoton
vbraun pushed a commit that referenced this issue Apr 6, 2023
    
In sage/src/sage/libs/eclib/mwrank.pyx
Line 843 should read 'minumum' instead of 'minimum'.

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URL: #35390
Reported by: yukibl
Reviewer(s): Matthias Köppe
vbraun pushed a commit that referenced this issue Apr 6, 2023
    
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URL: #35405
Reported by: Marc Mezzarobba
Reviewer(s): Matthias Köppe
vbraun pushed a commit that referenced this issue Apr 6, 2023
    
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### 📚 Description

fix all pep8 E303 warning in the folders whose name starts with the
letter m

purely done with autopep8:

```
$ autopep8 -i --select=E303 src/sage/m*/*.py
$ autopep8 -i --select=E303 src/sage/m*/*/*.py
```

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URL: #35409
Reported by: Frédéric Chapoton
Reviewer(s): David Coudert
vbraun pushed a commit that referenced this issue Apr 6, 2023
    
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### 📚 Description

Follow-up from #35056. Currently no
codecov reports are displayed because the doc deployment workflow is
failing and codecov by default only adds its checks if all other checks
are passing. We change this setting so that codecov checks are always
added, regardless of other failing tests.

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URL: #35412
Reported by: Tobias Diez
Reviewer(s): Kwankyu Lee, Matthias Köppe, Tobias Diez
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 26, 2025
    
Previously it recursively pickles an array of Python `int` . Now it
pickles a `bytes` object, which should be faster and result in
(generally speaking, for very short input it may lead to slightly longer
output) smaller input.

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URL: sagemath#39367
Reported by: user202729
Reviewer(s): David Coudert, user202729
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 26, 2025
Fix issue pointed out in
sagemath#39153 (comment)

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URL: sagemath#39377
Reported by: user202729
Reviewer(s):
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 28, 2025
…ari and cypari

    
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URL: sagemath#39265
Reported by: Tobias Diez
Reviewer(s):
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 28, 2025
… `sage/graphs/generic_graph.py`

    
Following sagemath#39280 and discussions in sagemath#39177, we add parameter `immutable`
to some graph product operations defined in
`sage/graphs/generic_graph.py`:
- `cartesian_product`
- `tensor_product`
- `lexicographic_product`
- `strong_product`
- `disjunctive_product`


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URL: sagemath#39285
Reported by: David Coudert
Reviewer(s): David Coudert, Frédéric Chapoton
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 28, 2025
    
Fixes sagemath#33034.

Issue sagemath#33034 pointed out that integrating a function that is identically
zero can produce a nonzero value. However, this was a maxima bug that
was fixed in sage 10.1.  So we just add a doctest.

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URL: sagemath#39362
Reported by: DaveWitteMorris
Reviewer(s):
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 28, 2025
    
Fix some errors pointed out in
sagemath#39129


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URL: sagemath#39378
Reported by: user202729
Reviewer(s):
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 29, 2025
    
The method is unnecessarily duplicated, which this pull request removes.

Besides, it wasn't originally correctly implemented for modules and
matrix spaces. Fixed now.

Side note: technically a matrix space over R is a (usually
noncommutative) R-algebra, which is in turn a R-module. Yet MatrixSpace
doesn't inherit from Module?

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URL: sagemath#39137
Reported by: user202729
Reviewer(s): Frédéric Chapoton
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 29, 2025
…ari and cypari

    
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example, "Fixes sagemath#12345". -->



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URL: sagemath#39265
Reported by: Tobias Diez
Reviewer(s):
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 29, 2025
… `sage/graphs/generic_graph.py`

    
Following sagemath#39280 and discussions in sagemath#39177, we add parameter `immutable`
to some graph product operations defined in
`sage/graphs/generic_graph.py`:
- `cartesian_product`
- `tensor_product`
- `lexicographic_product`
- `strong_product`
- `disjunctive_product`


### 📝 Checklist

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URL: sagemath#39285
Reported by: David Coudert
Reviewer(s): David Coudert, Frédéric Chapoton
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 29, 2025
    
Fixes sagemath#33034.

Issue sagemath#33034 pointed out that integrating a function that is identically
zero can produce a nonzero value. However, this was a maxima bug that
was fixed in sage 10.1.  So we just add a doctest.

### 📝 Checklist

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URL: sagemath#39362
Reported by: DaveWitteMorris
Reviewer(s):
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 29, 2025
    
Fix some errors pointed out in
sagemath#39129


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URL: sagemath#39378
Reported by: user202729
Reviewer(s):
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 29, 2025
New method `ComplexBallField.zeta_zeros` that wraps
`acb_dirichlet_zeta_zeros` for computing zeros of the Rieman ζ function.

<!-- ^ Please provide a concise and informative title. -->
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description below. -->
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to calculate 1 + 2". -->
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URL: sagemath#39391
Reported by: Pierre Lairez
Reviewer(s): Marc Mezzarobba
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 30, 2025
    
The method is unnecessarily duplicated, which this pull request removes.

Besides, it wasn't originally correctly implemented for modules and
matrix spaces. Fixed now.

Side note: technically a matrix space over R is a (usually
noncommutative) R-algebra, which is in turn a R-module. Yet MatrixSpace
doesn't inherit from Module?

### 📝 Checklist

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URL: sagemath#39137
Reported by: user202729
Reviewer(s): Frédéric Chapoton
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 30, 2025
    
As discussed in https://gist.github.com/user202729/52b0c7134ea34f78a4416
cd19e28e578#checking-the-code-is-indeed-interruptable , the current
doctest of SageMath that tests `sage: alarm(0.5); f()` only checks
whether `f` can be interrupted within 10 minutes or whatever the doctest
time limit is — which is not particularly useful.

With this change, if `f` doesn't get interrupted within 0.2 second of
`alarm()` fired, a test failure will be reported.


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URL: sagemath#39142
Reported by: user202729
Reviewer(s): Tobias Diez
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 30, 2025
    
Would fix sagemath#39058 . I think it's
cleaner to remove this thing anyway (given that it doesn't work in the
real Sage command prompt either)

### 📝 Checklist

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URL: sagemath#39186
Reported by: user202729
Reviewer(s): Tobias Diez
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 30, 2025
…ari and cypari

    
<!-- ^ Please provide a concise and informative title. -->
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example, "Fixes sagemath#12345". -->



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URL: sagemath#39265
Reported by: Tobias Diez
Reviewer(s):
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 30, 2025
… `sage/graphs/generic_graph.py`

    
Following sagemath#39280 and discussions in sagemath#39177, we add parameter `immutable`
to some graph product operations defined in
`sage/graphs/generic_graph.py`:
- `cartesian_product`
- `tensor_product`
- `lexicographic_product`
- `strong_product`
- `disjunctive_product`


### 📝 Checklist

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preview.

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URL: sagemath#39285
Reported by: David Coudert
Reviewer(s): David Coudert, Frédéric Chapoton
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 30, 2025
    
Fixes sagemath#33034.

Issue sagemath#33034 pointed out that integrating a function that is identically
zero can produce a nonzero value. However, this was a maxima bug that
was fixed in sage 10.1.  So we just add a doctest.

### 📝 Checklist

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preview.

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URL: sagemath#39362
Reported by: DaveWitteMorris
Reviewer(s):
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 30, 2025
    
Fix some errors pointed out in
sagemath#39129


### 📝 Checklist

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URL: sagemath#39378
Reported by: user202729
Reviewer(s):
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 30, 2025
    
New method `ComplexBallField.zeta_zeros` that wraps
`acb_dirichlet_zeta_zeros` for computing zeros of the Rieman ζ function.

<!-- ^ Please provide a concise and informative title. -->
<!-- ^ Don't put issue numbers in the title, do this in the PR
description below. -->
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to calculate 1 + 2". -->
<!-- v Describe your changes below in detail. -->
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example, "Fixes sagemath#12345". -->


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URL: sagemath#39391
Reported by: Pierre Lairez
Reviewer(s): Marc Mezzarobba
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 31, 2025
    
<!-- ^ Please provide a concise and informative title. -->
<!-- ^ Don't put issue numbers in the title, do this in the PR
description below. -->
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to calculate 1 + 2". -->
<!-- v Describe your changes below in detail. -->
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example, "Fixes sagemath#12345". -->

The `SAGE_DB` variable was never used (as far as I can see). So we
remove it (as part of the process of migrating the databases to separate
python packages).

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URL: sagemath#39012
Reported by: Tobias Diez
Reviewer(s): Michael Orlitzky
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 31, 2025
    
The method is unnecessarily duplicated, which this pull request removes.

Besides, it wasn't originally correctly implemented for modules and
matrix spaces. Fixed now.

Side note: technically a matrix space over R is a (usually
noncommutative) R-algebra, which is in turn a R-module. Yet MatrixSpace
doesn't inherit from Module?

### 📝 Checklist

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preview.

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URL: sagemath#39137
Reported by: user202729
Reviewer(s): Frédéric Chapoton
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 31, 2025
    
As discussed in https://gist.github.com/user202729/52b0c7134ea34f78a4416
cd19e28e578#checking-the-code-is-indeed-interruptable , the current
doctest of SageMath that tests `sage: alarm(0.5); f()` only checks
whether `f` can be interrupted within 10 minutes or whatever the doctest
time limit is — which is not particularly useful.

With this change, if `f` doesn't get interrupted within 0.2 second of
`alarm()` fired, a test failure will be reported.


### 📝 Checklist

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- [x] I have updated the documentation and checked the documentation
preview.

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URL: sagemath#39142
Reported by: user202729
Reviewer(s): Tobias Diez
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 31, 2025
    
Would fix sagemath#39058 . I think it's
cleaner to remove this thing anyway (given that it doesn't work in the
real Sage command prompt either)

### 📝 Checklist

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preview.

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URL: sagemath#39186
Reported by: user202729
Reviewer(s): Tobias Diez
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 31, 2025
…ari and cypari

    
<!-- ^ Please provide a concise and informative title. -->
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description below. -->
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to calculate 1 + 2". -->
<!-- v Describe your changes below in detail. -->
<!-- v Why is this change required? What problem does it solve? -->
<!-- v If this PR resolves an open issue, please link to it here. For
example, "Fixes sagemath#12345". -->



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preview.

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URL: sagemath#39265
Reported by: Tobias Diez
Reviewer(s):
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 31, 2025
… `sage/graphs/generic_graph.py`

    
Following sagemath#39280 and discussions in sagemath#39177, we add parameter `immutable`
to some graph product operations defined in
`sage/graphs/generic_graph.py`:
- `cartesian_product`
- `tensor_product`
- `lexicographic_product`
- `strong_product`
- `disjunctive_product`


### 📝 Checklist

<!-- Put an `x` in all the boxes that apply. -->

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- [x] The description explains in detail what this PR is about.
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- [x] I have updated the documentation and checked the documentation
preview.

### ⌛ Dependencies

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<!-- - sagemath#34567: ... -->
    
URL: sagemath#39285
Reported by: David Coudert
Reviewer(s): David Coudert, Frédéric Chapoton
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 31, 2025
    
Fixes sagemath#33034.

Issue sagemath#33034 pointed out that integrating a function that is identically
zero can produce a nonzero value. However, this was a maxima bug that
was fixed in sage 10.1.  So we just add a doctest.

### 📝 Checklist

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- [x] The description explains in detail what this PR is about.
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preview.

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URL: sagemath#39362
Reported by: DaveWitteMorris
Reviewer(s):
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 31, 2025
    
Fix some errors pointed out in
sagemath#39129


### 📝 Checklist

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URL: sagemath#39378
Reported by: user202729
Reviewer(s):
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 31, 2025
    
New method `ComplexBallField.zeta_zeros` that wraps
`acb_dirichlet_zeta_zeros` for computing zeros of the Rieman ζ function.

<!-- ^ Please provide a concise and informative title. -->
<!-- ^ Don't put issue numbers in the title, do this in the PR
description below. -->
<!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method
to calculate 1 + 2". -->
<!-- v Describe your changes below in detail. -->
<!-- v Why is this change required? What problem does it solve? -->
<!-- v If this PR resolves an open issue, please link to it here. For
example, "Fixes sagemath#12345". -->


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URL: sagemath#39391
Reported by: Pierre Lairez
Reviewer(s): Marc Mezzarobba
vbraun pushed a commit to vbraun/sage that referenced this issue Jan 31, 2025
    
Test that the Sage git repo is clean

<!-- ^ Please provide a concise and informative title. -->
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description below. -->
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to calculate 1 + 2". -->
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<!-- v If this PR resolves an open issue, please link to it here. For
example, "Fixes sagemath#12345". -->

Add a doctest which will check whether the Sage git repo is clean. The
test is based on the top answer at
https://unix.stackexchange.com/questions/155046/determine-if-git-
working-directory-is-clean-from-a-script.

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URL: sagemath#39392
Reported by: John H. Palmieri
Reviewer(s):
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