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Tumor <- MetacellsByGroups( + seurat_obj = Tumor, + group.by = c("seurat_clusters", "Patient_ID"), # specify the columns in seurat_obj@meta.data to group by + k = 25, # nearest-neighbors parameter + max_shared = 10, # maximum number of shared cells between two metacells + ident.group = 'cell_type' # set the Idents of the metacell seurat object + ) Error in MetacellsByGroups(seurat_obj = Tumor, group.by = c("seurat_clusters", : ident.group must be in group.by
#339
opened Nov 30, 2024 by
limmaDeseq2
Question about [my question]Error in !CheckWGCNAName(seurat_obj, wgcna_name) : invalid argument type
question
Further information is requested
#334
opened Nov 15, 2024 by
RGT183
Question about multiple spatial samples
question
Further information is requested
#333
opened Nov 14, 2024 by
atrostleSW
Question about dendrogram plot
question
Further information is requested
#332
opened Nov 14, 2024 by
laterz-f
Question about proportion of genes assigned to grey module
question
Further information is requested
#331
opened Nov 13, 2024 by
ddressman91
Analysis of changes in co-expression patterns
question
Further information is requested
#330
opened Nov 12, 2024 by
amingson
Error in ConstructPseudobulk (argument is not a matrix) when I don't specify label_col
#327
opened Oct 30, 2024 by
ddressman91
PlotModuleTraitCorrelation for one trait
question
Further information is requested
#322
opened Oct 24, 2024 by
shiave
MetaspotsByGroups ERROR: invalid class “Assay5” object: Layers must be two-dimensional objects
#317
opened Oct 16, 2024 by
dylanwudy
Question about the possibility of using external metacell asssignment
question
Further information is requested
#310
opened Sep 10, 2024 by
pmandros
Co-expression module dynamics with pseudotime cannot run the module dynamics graphs
#306
opened Sep 2, 2024 by
CamiCalamity
no applicable method for 'JoinLayers' applied to an object of class "c('Assay', 'KeyMixin')
question
Further information is requested
#296
opened Jul 19, 2024 by
DLY-2021
MetacellsByGroups -> "Error in apply(cell_sample, 1, function(x) { : dim(X) must have a positive length"
question
Further information is requested
#290
opened Jul 9, 2024 by
MJD-BlanckGroup
Seeking parameter suggestions for hdwgcna
question
Further information is requested
#285
opened Jun 26, 2024 by
xjyenjoy81
Error when running "ModuleEigengenes()" with a seurat.v5 object
#271
opened May 30, 2024 by
Zweig-Wong
Tweaking the number of modules
question
Further information is requested
#252
opened Apr 4, 2024 by
Thapeachydude
Conda Skeleton for Workflow Integration
enhancement
New feature or request
#229
opened Feb 29, 2024 by
shahrozeabbas
ModuleFeaturePlot - add split.by option
enhancement
New feature or request
#227
opened Feb 26, 2024 by
ashleshagogate
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