Remove hard scvi-tools dependency
#490
Workflow file for this run
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| name: CI | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| jobs: | |
| # Skip CI if commit message contains `[ci skip]` in the subject | |
| init: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| skip: ${{ steps.ci-skip-step.outputs.ci-skip }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| - id: ci-skip-step | |
| uses: mstachniuk/ci-skip@master | |
| # Check if pre-commit hooks pass and if README.rst can be converted to HTML | |
| linting: | |
| needs: init | |
| if: ${{ needs.init.outputs.skip == 'false' }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup Python 3.10 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: "3.10" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install pre-commit | |
| - name: Check pre-commit compatibility | |
| run: pre-commit run --all-files --show-diff-on-failure | |
| # Run unit tests | |
| test: | |
| needs: linting | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ["3.9", "3.10"] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: pip install -e '.[dev]' | |
| - name: Unit tests | |
| timeout-minutes: 60 | |
| run: python -m pytest --durations=25 --ignore=tests/datasets/test_datasets.py --hypothesis-profile=ci --cov=scvelo -vv | |
| test-dataset-downloads: | |
| needs: test | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Setup Python 3.10 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: "3.10" | |
| - name: Install dependencies | |
| run: | | |
| pip install -e . | |
| pip install hypothesis pytest pytest-cov | |
| - name: Test dataset downloads | |
| timeout-minutes: 60 | |
| run: python -m pytest tests/datasets/test_datasets.py -vv |