Structural variation caller using third generation sequencing
-
Updated
Dec 16, 2024 - Python
#
nanopore
Here are 97 public repositories matching this topic...
A PyTorch Basecaller for Oxford Nanopore Reads
-
Updated
Jul 25, 2024 - Python
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
-
Updated
Oct 18, 2024 - Python
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
deep-learning nanopore genomics computational-biology pacbio variant-calling illumina long-reads variant-detection ont-data ont-models
-
Updated
Dec 12, 2024 - Python
PEPPER-Margin-DeepVariant
nanopore variants variant-calling oxford-nanopore genome-variation long-reads pacbio-ccs assembly-polishing
-
Updated
Jan 12, 2024 - Python
Methylation/modified base calling separated from basecalling.
-
Updated
Sep 17, 2024 - Python
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
-
Updated
Dec 29, 2024 - Python
Identification of differential RNA modifications from nanopore direct RNA sequencing
python machine-learning rna-seq nanopore genomics rna transcriptomics modification nanopore-sequencing rna-modifications
-
Updated
Nov 7, 2024 - Python
SquiggleKit: A toolkit for manipulating nanopore signal data
-
Updated
Feb 16, 2024 - Python
Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
-
Updated
Oct 25, 2021 - Python
Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
-
Updated
Jun 30, 2024 - Python
Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
-
Updated
Feb 7, 2023 - Python
Research release basecalling models and configurations
-
Updated
Jun 18, 2024 - Python
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
-
Updated
Jun 27, 2024 - Python
Snakemake pipelines for nanopore sequencing data archiving and processing
-
Updated
Feb 2, 2022 - Python
Recentrifuge: robust comparative analysis and contamination removal for metagenomics
nanopore ngs metagenomics comparative-genomics kraken contamination clark robustness centrifuge low-biomass lmat
-
Updated
Sep 25, 2024 - Python
A tool to identify, orient, trim and rescue full length cDNA reads
-
Updated
Jul 4, 2022 - Python
RNA modifications detection from Nanopore dRNA-Seq data
-
Updated
Jan 22, 2024 - Python
A versatile sequenced read processor for nanopore direct RNA sequencing
-
Updated
May 24, 2020 - Python
Improve this page
Add a description, image, and links to the nanopore topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the nanopore topic, visit your repo's landing page and select "manage topics."