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Abs store#293

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shikharsg wants to merge 191 commits intozarr-developers:abs_storezarr-developers/zarr-python:abs_storefrom shikharsg:abs_storeshikharsg/zarr:abs_storeCopy head branch name to clipboard

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Commits on Jun 26, 2018

• POC of making a single file out of zarr dot files

  

  Martin Durant

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Commits on Jul 2, 2018

• (WIP) include simple code that would load metadata

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  Martin Durant

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Commits on Aug 2, 2018

• Implement ConsolidatedMetadataStore

  

  Martin Durant

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• fix for py34 py35

  

  Martin Durant

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• improve coverage; data write in consolidated store

  

  Martin Durant

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• coverage

  

  Martin Durant

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Commits on Aug 12, 2018

• implemented the rest of the mutable mapping functions. tests pass with python 3.5

  shikharsg

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Commits on Aug 14, 2018

• using local blob emulator for storage.ABSStore testing

  shikharsg

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• fixed PY2 array.array error in storage.ABSStore

  shikharsg

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• create test container if not exists in ABSStore test

  shikharsg

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• added more tests for ABSStore

  shikharsg

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Commits on Aug 15, 2018

• reverted blob client creation to inside of ABSStore

  shikharsg

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• added group test for ABSStore

  shikharsg

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• emulator connection string not needed

  shikharsg

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• fixed import statement location and put azure-storage-blob in requirements

  shikharsg

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• fixed pickle tests

  shikharsg

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• fixed listdir in ABSStore

  shikharsg

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Commits on Aug 16, 2018

• fixed getsize

  shikharsg

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• Fixed PY2 pickle test. python 2 pickle can't pickle instance methods

  shikharsg

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Commits on Sep 4, 2018

• implemented the suggestion from here: zarr-developers#293 (comment)

  shikharsg

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Commits on Sep 5, 2018

• flake-8 fixes

  shikharsg

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Commits on Oct 5, 2018

• Create CODE_OF_CONDUCT.md

  

  Joe Hamman

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Commits on Oct 11, 2018

• add email

  

  Joe Hamman

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• Merge pull request zarr-developers#305 from jhamman/add-code-of-conduct-1

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  alimanfoo

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Commits on Oct 18, 2018

• fix failing pickle tests

  alimanfoo

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• flake8

  alimanfoo

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• POC of making a single file out of zarr dot files

  

  Martin Durant

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  alimanfoo

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  7a5c81d

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• (WIP) include simple code that would load metadata

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  Martin Durant

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  alimanfoo

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• Implement ConsolidatedMetadataStore

  

  Martin Durant

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  alimanfoo

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• fix for py34 py35

  

  Martin Durant

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  alimanfoo

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• improve coverage; data write in consolidated store

  

  Martin Durant

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  alimanfoo

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• coverage

  

  Martin Durant

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  alimanfoo

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• Merge branch 'consolidate_metadata' of https://github.com/martindurant/zarr into consolidate_metadata

  

  Martin Durant

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• add py37; drop py34; upgrade requirements

  alimanfoo

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• fix docstrings for npy115

  alimanfoo

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• cannot get warnings tests to work on py2, skip them

  alimanfoo

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• tweaks to storage pickle and tests

  alimanfoo

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• simplify PR template

  alimanfoo

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• get py37 working on travis

  alimanfoo

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• reduce verbosity

  alimanfoo

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• release notes

  alimanfoo

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• skip a doctest

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• try to get appveyor working for py37

  alimanfoo

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• test different npy under py36 not py37

  alimanfoo

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• ensure cythonize numcodecs for py37 on appveyor

  alimanfoo

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Commits on Oct 19, 2018

• tweak comment [ci skip]

  alimanfoo

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• Merge pull request zarr-developers#308 from alimanfoo/pickle-failures-20181018

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• POC of making a single file out of zarr dot files

  

  Martin Durant

  authored and

  alimanfoo

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  552a084

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• (WIP) include simple code that would load metadata

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  Martin Durant

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  alimanfoo

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• Implement ConsolidatedMetadataStore

  

  Martin Durant

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  alimanfoo

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• fix for py34 py35

  

  Martin Durant

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  alimanfoo

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  e62d39c

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• improve coverage; data write in consolidated store

  

  Martin Durant

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  alimanfoo

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• coverage

  

  Martin Durant

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  alimanfoo

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• doc and param style

  alimanfoo

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• add test for nchunks_initialized

  alimanfoo

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• expose chunk_store param in open* functions

  alimanfoo

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• implement open_consolidated

  alimanfoo

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• tweaks to consolidated behaviour

  alimanfoo

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• py2 fix

  alimanfoo

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• Add support for shapes in dtype definitions

  

  Tarik Onalan

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  alimanfoo

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• Add shape encoding and metadata test

  

  Tarik Onalan

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  alimanfoo

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• Resolve flake complaint

  

  Tarik Onalan

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  alimanfoo

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• Fix Python2 syntax error and separate unpacker

  

  Tarik Onalan

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  alimanfoo

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• Refactor field unpacking

  

  Tarik Onalan

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  alimanfoo

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• Expand unstructured array dimensions into shape

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  Tarik Onalan

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  alimanfoo

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• Undo unnecessary change

  

  Tarik Onalan

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  alimanfoo

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• Write subshape tests and remove old meta test

  

  Tarik Onalan

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  alimanfoo

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• Revert "Write subshape tests and remove old ..."

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  Tarik Onalan

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  alimanfoo

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• Refine unstructured/structured metadata tests

  

  Tarik Onalan

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  alimanfoo

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• Write crude write-read test

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  Tarik Onalan

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• Fix dtype expansion during store initialization

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  Tarik Onalan

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  alimanfoo

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• Move crude tests to core tests

  

  Tarik Onalan

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  alimanfoo

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• Fix flake8 complaints

  

  Tarik Onalan

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  alimanfoo

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• Fix accidental test break

  

  Tarik Onalan

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  alimanfoo

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• Reference upstream numpy bug in test suite

  

  Tarik Onalan

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  alimanfoo

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• Style revisions

  

  Tarik Onalan

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  alimanfoo

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• clarify how to encode structured data types

  alimanfoo

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• minor edit

  alimanfoo

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• test and fix for uninitialised structured array

  alimanfoo

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• release notes [ci skip]

  alimanfoo

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• Merge pull request zarr-developers#296 from onalant/shape

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• Fix typo in comment

  jakirkham

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Commits on Oct 20, 2018

• Merge pull request zarr-developers#310 from jakirkham/fix_typo_comment

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Commits on Oct 23, 2018

• Merge branch 'consolidate_metadata' of https://github.com/martindurant/zarr into consolidate_metadata

  

  Martin Durant

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• Update docstrings

  

  Martin Durant

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Commits on Oct 31, 2018

• added api docs; consistify references in docstrings

  alimanfoo

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Commits on Nov 1, 2018

• add tests

  alimanfoo

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• Add section to tutorial, add to release notes

  

  Martin Durant

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• Merge branch 'master' into consolidate_metadata

  

  Martin Durant

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• fix getsize test

  alimanfoo

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• Merge branch 'consolidate_metadata' of github.com:martindurant/zarr into consolidate_metadata

  alimanfoo

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• add setuptools-scm to dev env so can go fully offline

  alimanfoo

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• fix requirements

  alimanfoo

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• skip consolidate doctests; minor edits

  alimanfoo

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• fix refs [ci skip]

  alimanfoo

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Commits on Nov 3, 2018

• make consolidated metadata human-readable

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Commits on Nov 6, 2018

• comments [ci skip]

  alimanfoo

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Commits on Nov 8, 2018

• rework requirements for pyup.io

  alimanfoo

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Commits on Nov 14, 2018

• include cython in test requirements

  alimanfoo

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• Merge pull request zarr-developers#268 from martindurant/consolidate_metadata

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• Merge branch 'master' into rework-requirements-alimanfoo-20181108

  alimanfoo

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• Merge pull request zarr-developers#326 from alimanfoo/rework-requirements-alimanfoo-20181108

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• fix coverage

  alimanfoo

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• add basic tests for reading and writing to ConsolidatedMetadataStore

  alimanfoo

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• fix consolidated tests

  alimanfoo

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• Merge pull request zarr-developers#332 from alimanfoo/fix-coverage-alimanfoo-20181114

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Commits on Nov 16, 2018

• Configure flake8's line length as 100

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• Merge pull request zarr-developers#335 from jakirkham/config_flake8_line_len

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Commits on Nov 19, 2018

• pass kwargs to consolidate

  rabernat

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• Merge pull request zarr-developers#338 from rabernat/consolidated_pass_kwargs

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Commits on Nov 21, 2018

• Mark decoding as not covered by Python 2 tests

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Commits on Nov 27, 2018

• merged master with abs_store

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• added azure-storage-blob

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Commits on Nov 30, 2018

• first attempt at docker build with azurite

  shikharsg

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• azure storage emulator in appveyor

  shikharsg

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• syntax correction

  shikharsg

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• checking if emulator is preinstalled

  shikharsg

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• syntax fix

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• syntax fix

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• syntax fix

  shikharsg

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• Bump Numcodecs requirement to 0.6.1

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• Assert MsgPack round-trips bytes objects correctly

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Commits on Dec 1, 2018

• properly guard against removal of object codec

  alimanfoo

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• Ensure chunk in _decode_chunk is an ndarray

  jakirkham

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• Reshape chunk ourselves since it is an ndarray

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• Refactor reshape from _decode_chunk

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• Consolidate type checks in _decode_chunk

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Commits on Dec 2, 2018

• Merge pull request zarr-developers#343 from jakirkham/add_pragma_cov

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Commits on Dec 3, 2018

• Drop ensure_bytes definition from zarr.storage

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• Take flattened array views to avoid some copies

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• Simplify buffer_size by using ensure_ndarray

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• Simplify ensure_str in zarr.meta

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• Bump to Numcodecs 0.6.2

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Commits on Dec 4, 2018

• Update tutorial's info content

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• Fix missing backslash in docs [ci skip]

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• Merge pull request zarr-developers#353 from jakirkham/fix_missing_backslash

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• Skip coverage of temp file cleanup

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• Merge pull request zarr-developers#355 from jakirkham/ignore_tempfile_cleanup

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• Merge 'zarr-developers/master' into 'jakirkham/use_numcodecs_0.6.2'

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• release notes [ci skip]

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• Bump Numcodecs requirement to 0.6.2 (zarr-developers#352)

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• avoid race condition during chunk write (zarr-developers#327)

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Commits on Dec 7, 2018

• Ensure DictStore contains only bytes (zarr-developers#350)

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Commits on Dec 10, 2018

• Cast datetime and timedelta to signed 64-bit int (zarr-developers#344)

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• Use ensure_ndarray to view chunk as an array (zarr-developers#360)

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Commits on Dec 12, 2018

• removed wrong syntax

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• storage emulator with docker

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• merged abs_store with upstream

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Commits on Dec 13, 2018

• trying different appveyor image

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• flake 8 fixes

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• full coverage

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Commits on Dec 14, 2018

• verbose logs for pip install to see appveyor error

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• trying to run locally installed emulator

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• single-double quote yaml fix

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• cmd prefix

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• double quotes around exe file path

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• double quotes within single quotes with environment variable substitution

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• trying appveyor build with VS2015 image

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• added comment and removed verbosity option for pip install

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• list_abs_directory to list only directory blob using delimiter option in azure blob client

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• fixed ABSStore docs

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• Drop temporary workaround for get_codec (zarr-developers#361)

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Commits on Dec 16, 2018

• fixed windows path listdir error

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• ABSStore refactoring

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Commits on Dec 23, 2018

• moved py2 array.array checking to numcodecs ensure bytes

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Commits on Jan 3, 2019

• Use reversed to iterate through list backwards (zarr-developers#374)

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• Always use tuples for multidimensional indexing (zarr-developers#376)

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Commits on Jan 16, 2019

• Test the popitem method of MutableMappings too (zarr-developers#378)

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• Test pop with default argument (zarr-developers#380)

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Commits on Jan 22, 2019

• Add SQLiteStore (zarr-developers#368)

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• Merge branch 'master' into abs_store

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• syntax fix

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• flake8 fix

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Commits on Jan 23, 2019

• fixed ABSStore parameter name container

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• removed context manager from ABSStore

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• ABSStore.__delitem__ now takes only 1 azure storage API call

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• docs

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• Update zarr/storage.py

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Commits on Feb 1, 2019

• removed global import of azure storage library

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Commits on Feb 2, 2019

• added ABSStore to zarr root import

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• added ABSStore to tutorial.rst

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• fixed docs

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• trying to fix tutorial.rst

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• flake8 fix

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• fixing tutorial.rst

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Commits on Feb 4, 2019

• fixed ABSStore in tutorial

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Commits on Feb 6, 2019

• Chunkwise iteration over arrays. (zarr-developers#399)

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• add missing PR link

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Commits on Feb 8, 2019

• MongoDB and Redis stores (zarr-developers#372)

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• Merge branch 'master' into abs_store

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