Improvements to radiation code #514

dustinswales · 2020-11-02T22:00:15Z

This PR contains changes accumulated changes impacting both RRTM(G) and RRTM(GP) radiation schemes.

Changes impacting BOTH G and GP:

New module containing routines to compute fields needed by the radiation schemes relating to cloud overlap (e.g. alpha, cloud de-correlation length).
Additional namelist options for control over the method to compute decorrelation length. (Aside: For G these fields come in via "use physparam". In GP these are input arguments to the scheme. Actually, with this PR, all fields used by GP is provided as an argument and defined in GFS_typedefs.F90/.meta).
Removed ability to sample the shortwave and longwave clouds differently (e.g. Using different overlap assumptions for SW/LW clouds). Just as above, the new field controlling this comes into G and GP differently.

Changes ONLY impacting GP:

Support for exponential and exponential-random cloud overlap.
Model configuration information regarding cloud-overlap is passed directly into the GP routines. This was to remove an ambiguity and magic numbers. So instead of if (iovr = 5), in the GP schems we have if (iovr = iovr_maxrand)
Compute overlap-parameters using model layer thickness defined from the layer-centers. Previously defined from layer-interfaces.
Major cleanup to GFS_rrtmgp_setup.F90. As the GP radiation scheme in CCPP matures, it becomes more independent of the G infrastructure of which it was built on. radinit() and radfinalize() were merged into GFS_rrtmgp_setup_init() and GFS_rrtmgp_setup_run(), respectively. The last and only reference to physparam in GP is still in this module, but only to setup routines that rely on the G infrastructure (e.g. setting up the traces gases and aerosols).

Associated PRs:

#514
NOAA-EMC/fv3atm#193
ufs-community/ufs-weather-model#262

For regression testing information, see ufs-community/ufs-weather-model#262

…parameters.

…irectly to routines.

…n physparam.f, some housekeeping.

climbfuji · 2020-11-03T14:45:00Z

Thanks, @dustinswales . I am going to look at the code changes in detail after ufs-community/ufs-weather-model#223 was merged (which contains updates to the radiation for HWRF physics, including cloud overlap methods) and you updated your PR with those changes. Hopefully this doesn't create too much additional work for you.

…ster-ncar-f3e6761

climbfuji

Great work. I haven't run any of the regression tests yet, will approve afterwards. Do we need to update to a new hash in rte-rrtmgp for this PR?

climbfuji · 2020-11-06T17:25:03Z

physics/radsw_main.F90

-     &                             isubcsw, icldflg, iovrsw,  ivflip,   &
-     &                             iswmode
+     &                             isubcsw, icldflg, iovr,  ivflip,     &
+     &                             iswmode, kind_phys


Wondering why this needs to be added here? Should it have been there all the time, but because of some compiler dependency/module-use statements, it just wasn't necessary?

It is in the LW RRTMG code, I just added it for consistency. Not sure why it wasn't there in the past.

use machine below at line # 312 already contains kind_phys as "rb" So this routine should only use "rb" I assume (I don't see the full code here).

I think you are right. We probably don't need it in either of them, radsw_main.F90 and radlw_main.F90. @dustinswales can you try removing them both?

climbfuji · 2020-11-06T17:28:34Z

physics/rrtmgp_sw_cloud_sampling.meta

+  type = integer
+  intent = in
+  optional = F
+[iovr_rand]


Great to have those parameters as CCPP variables! Wondering if we should clean up the hard-coded integers in the remaining radiation-cloud codes (not necessarily as part of this PR, but it would be a nice to have).

Yeah I thought about doing this, but then decided not to. Probably best in a separate cleanup PR.

climbfuji · 2020-11-06T17:36:49Z

@mjiacono @joeolson42 @tanyasmirnova @hannahcbarnes All, since you touched radiation-cloud code in the past, can you please look at this PR from @dustinswales on cleaning up / unifying the radiation-cloud codes for RRTMG and RRTMGP? Thanks.

tanyasmirnova

The changes to the code are massive but I did not see any modifications to the parts of the code in GSD_rrtng_pre.F90 that I was modifying for the GSL physics suite.

SMoorthi-emc · 2020-11-06T20:21:01Z

physics/GFS_rrtmg_setup.F90

@@ -45,7 +45,7 @@ module GFS_rrtmg_setup
 !!
   subroutine GFS_rrtmg_setup_init (                                    &
          si, levr, ictm, isol, ico2, iaer, ialb, iems, ntcw,  num_p2d, &
-          num_p3d, npdf3d, ntoz, iovr_sw, iovr_lw, isubc_sw, isubc_lw,  &
+          num_p3d, npdf3d, ntoz, iovr, isubc_sw, isubc_lw,              &


Why remove this generality?

@SMoorthi-emc It was decided that we didn't need this ability.

Does this meaning the sw and lw will always be called in same frequency?

This switch is not about frequency, but about the choice of cloud overlap method. The change that the radiation groups (who was involved, @dustinswales ?) agreed on means that the same cloud overlap method is used for both LW and SW radiation. Makes a lot of sense to me, not sure how physical it would be to use different methods between them.

This was discussed with @Qingfu-Liu @lisa-bengtsson @dustinswales @mjiacono Bao and Pincus in early October. The radiation developers recommended using the same cloud overlap for SW and LW because it is unphysical to assume otherwise. Also, @qingfu mentioned that the operational models at NCEP also use the same cloud overlap for SW and LW, so it was understood that the generality was not necessary.

SMoorthi-emc

There are lots of changes here; hope it does not break the code.
I did not look at any GP changes.
I guess changing iovrlw and iovrsw to iovr will break workflow scripts.

climbfuji · 2020-11-06T20:48:26Z

There are lots of changes here; hope it does not break the code.
I did not look at any GP changes.
I guess changing iovrlw and iovrsw to iovr will break workflow scripts.

Thanks, @SMoorthi-emc that is a good point. I will ask @junwang-noaa and Kate Friedman, also Judy Henderson to prepare for this change.

dustinswales · 2020-11-06T21:02:52Z

@SMoorthi-emc @climbfuji @tanyasmirnova
I've tested this in UFS using v15p2 and v16beta physics. In both DEBUG and PROD mode. I also exercised the new namelist options for exponential and exponential-random overlap in both G and GP.
The changes look like a lot, but mostly just repeated code.

1. use iovr for model after NCAR/ccpp-physics#514 and iovr_sw and iovr_lw for older version of the model, controled by RUN_CCPP 2. remove the if block and use atmos_model_nml to turn on/off the CCPP option

…d iovrlw will be replaced by a single iovr option

includes updates to make CICE input file ice_in match the latest in the rt test options, updates to include fractional grid options (set to false for now), update to have namelist options iovrsw and iovrlw will be replaced by a single iovr which was needed after NCAR/ccpp-physics#514

* updated checkout build and link to use new unified model - changed a few names from fv3 to ufs * updates for linking to new fix * point to a particular hash of ufs model * remove theia modules * update ww3 build for fv3->ufs naming change * adding WW3 to build * updates for having cice fix file have resolution folders and removing cice5 references * remove CODEwave as it is an unused variable * more fv3->ufs dir name changes * update location of fd_nems.yaml file for CMEPS-interface change * modules used for successful forecast and atm post, but ocn post failed * remove nowave parm file * rename w/wave file * change of parameters for mom6 to match rt tests * add all the parm files for ocean * updates for MOM6 to use same MOM_input templates as used in rt tests/parm dir * add one-step option to no wave case * updates to make nems.configure template files more closely match ufs-weather-model tests/parm templates for easier updates and also added updates for frac grid/not frac grid option * use latest ufs-weather-model * update to latest code * changing n_aero from 1 to 0 following ufs-community/ufs-weather-model#270 * updating MOM_input_templates based on ufs-community/ufs-weather-model#290 * updating iovsr after NCAR/ccpp-physics#514 namelist options iovrsw and iovrlw will be replaced by a single iovr option * updates for most recent commit to ufs-weather-model includes updates to make CICE input file ice_in match the latest in the rt test options, updates to include fractional grid options (set to false for now), update to have namelist options iovrsw and iovrlw will be replaced by a single iovr which was needed after NCAR/ccpp-physics#514 * deleting redundant/renamed files. These files are now nems.configure.cpld(_wave).IN

* updated checkout build and link to use new unified model - changed a few names from fv3 to ufs * updates for linking to new fix * point to a particular hash of ufs model * remove theia modules * update ww3 build for fv3->ufs naming change * adding WW3 to build * updates for having cice fix file have resolution folders and removing cice5 references * remove CODEwave as it is an unused variable * more fv3->ufs dir name changes * update location of fd_nems.yaml file for CMEPS-interface change * modules used for successful forecast and atm post, but ocn post failed * remove nowave parm file * rename w/wave file * change of parameters for mom6 to match rt tests * add all the parm files for ocean * updates for MOM6 to use same MOM_input templates as used in rt tests/parm dir * add one-step option to no wave case * updates to make nems.configure template files more closely match ufs-weather-model tests/parm templates for easier updates and also added updates for frac grid/not frac grid option * use latest ufs-weather-model * update to latest code * changing n_aero from 1 to 0 following ufs-community/ufs-weather-model#270 * updating MOM_input_templates based on ufs-community/ufs-weather-model#290 * updating iovsr after NCAR/ccpp-physics#514 namelist options iovrsw and iovrlw will be replaced by a single iovr option * updates for most recent commit to ufs-weather-model includes updates to make CICE input file ice_in match the latest in the rt test options, updates to include fractional grid options (set to false for now), update to have namelist options iovrsw and iovrlw will be replaced by a single iovr which was needed after NCAR/ccpp-physics#514 * deleting redundant/renamed files. These files are now nems.configure.cpld(_wave).IN * updated wave case file to include frac grid and made a new non-frac grid case file * use frac grid oro if frac grid true * add nonfrac grid case to readme * remove keep data option from case file

* add gfs gempak downstream jobs into def file * Issue #94 add waves-prdgen, ICE->ICEC, Sleep in gempak script * Issue #1: update name of DA jobs and scripts in accordance with WCOSS Implementation Standards * Increase walltime for new wavepost jobs * Issue #1: correct DA typos in sorc/link_fv3gfs.sh * deleted relocate_mv_nvortex.fd since storm relocation is no longer needed. modified build_tropcy_NEMS.sh to remove references to relocate_mv_nvortex * Restructured ecflow - up to post step * adding the line to go back a day for RTOFS for the if not NCO section because RTOFS will not be available until 06 cycle * Issue #1: add fhrgrp and fhrlst back to gfsawips in setup_workflow.py (bugfix) * updates for by hour post * Adding wafs wave and downstream jobs * Issue #131 added a path to DBNROOT * Issue #131 reduce scripts output to logfile * Small updates: - new UPP tag - new GLDAS tag - new WAFS tag - new module for WAFS - EE2 updates to awips scripts - added WAFS to archival - break downstream and WAFS archival into separate gfs_downstream tarball - update gfsarch dependencies to wait for all wavepost jobs to complete * Update WAFS tag to gfs_wafs.v6.0.6 * ecflow full day cycle included * Fix for running prep on Hera * Issue #1: update to UPP tag "upp_gfsv16_release.v1.0.15" * Issue #131 Unify dbn_alert path * Issue #1 - fix to link_fv3gfs.sh for new GLDAS tag * Issue #1 - update to UFS_UTILS ops-gfsv16.0.0 tag * Issue #1 - update SEND variables and add DBNROOT to base configs and add check to build_enkf_chgres_recenter_nc.sh for GSI build * updates for optimizing point jobs * renamed: scripts/exglobal_fcst_nemsfv3gfs.sh -> scripts/exglobal_forecast.sh and modified jobs/JGLOBAL_FORECAST parm/config/config.fcst * renamed: jobs/JGFS_POSTSND -> jobs/JGFS_ATMOS_POSTSND renamed: scripts/exgfs_postsnd.sh -> scripts/exgfs_atmos_postsnd.sh modified: docs/archive/README_bufr driver/product/run_postsnd.sh driver/product/run_postsnd.sh.cray driver/product/run_postsnd.sh.dell driver/product/run_postsnd.sh.hera driver/product/run_postsnd.sh.jet parm/config/config.postsnd * In anticipating changes from the GLDAS repo : renaming JGDAS_GLDAS to JGDAS_ATMOS_GLDAS, and exgdas_gldas.sh to exgdas_atmos_gldas.sh modified: driver/gdas/test_gdas_gldas.sh jobs/rocoto/gldas.sh parm/config/config.gldas sorc/link_fv3gfs.sh * Rename scripts to match ecf script naming convention. Add SENDDBN and DBNROOT. Update GLDAS tag. * Update EMC_verif-global tag to verif_global_v1.11.0 * Updated jobs name * 1)Update sorc/checkout.sh with new UPP tag upp_gfsv16_release.v1.0.16. 2)Update sorc/link_fv3gfs.sh with new file name convention for jjob and ex-script of post processing part. * Update Externals.cfg with new UPP tag upp_gfsv16_release.v1.0.16. * Updated scripts * Updated drivers and release notes * Fixing spelling mistake in config.gldas * Name change for tropcy scripts and update WAFS tag * Script name updates for sfc_prep and tracker * Update config.base.nco.static with config.base.emc.dyn changes * Modify each ecflow script with old j-job name for test. Modify the following in each definition file. - ecen family require new extern from previous cycle - Job jgfs_atmos_npoess_pgrb2_0p5deg trigger changed to be (requested from code manager): 1. jgfs_atmos_post_manager:release_post180 - Job jgdas_enkf_select_obs trigger changed to be: 1. previous cycle enkf post complete 2. current cycle jgdas_atmos_analysis_calc complete (new job) Tested as of 9/21/2020 before production switch with following condition: 1. Known issue in wafs gcip. Job failed. Waiting for code manager to fix. 2. obsproc testing still on going. 3. Code manager still updating j-job and ex-script names. Testing in hold until package is ready and WCOSS availability. * As requested from management, point ufs-weather-model to development: b8c5c22 git submodule f61416fef691d9ba39a40df1ce72aa574f54c390 FMS (2019.01.03) 6bc61df FV3 (heads/develop) 9d05172b711f4ab5d6f978dbe575bd67a681b55a NEMS (heads/develop) 96e3f3a8fa0389a4b110b0fa23e7a414f6d92038 WW3 (6.07.1-50-g96e3f3a8) ffdd19bc6c1df747394b7e9958a76238fcd44242 stochastic_physics (ufs-v1.0.0-70-gffdd19b) Remove aerosol from checkout * Update post.sh UPP JJOB script name to submit * Making J-Job naming change accourding to code manager. Remove temp files * modifications to python scripts remove aeroic task from setup_workflow_fcstonly.py delete setup_workflow_fcstonly_noaeroic.py add setup_workflow_fcstonly_aeroic.py * Update WAFS jobs/rocoto scripts to use new JJOB names * Update config.awips for newly named JJOB scripts * Issue #94 add /fakedbn to run DBN_alerts * Issue #1: update vrfy.sh to submit vsdb processing as separate job (only on WCOSS_DELL_P3) * Update gfswafs job to run with loop over fcsthrs * Update GLDAS tag to gldas_gfsv16_release.v1.10.0 * The EMC realtime parallel does not use operational job settings. Ecflow job card roll back the setting from module_used_gfs-16_job google sheet document. * Code manager indicated all wafs jobs wall clock is 30 mins. Code manager indicated job card for scripts/gfs/atmos/gempak/jgfs_atmos_pgrb2_spec_gempak.ecf need to be changed * Issue #1: update parm/config.vrfy to define VSDBJOBSH (used by jobs/rocoto/vrfy.sh) * Jobs were tested with PDY 20200925, code managers from post, gempak, wave, and post process certified the test run result. This merge included an update from high watermark testing (tested by gfs team using devonprod) results impact the following jobs: jgfs_atmos_analysis.ecf jgfs_forecast.ecf jgdas_atmos_analysis.ecf jgdas_enkf_update.ecf jgdas_enkf_ecen.ecf * cleaning up the rearranged scripts * Issue #1: update name of ncdiag executable and source code directory to be conistent * Issue #94 add native grids as default grids * - updated to use 28Sep develop ufs-weather-model, d021e7b f61416fef691d9ba39a40df1ce72aa574f54c390 FMS (2019.01.03) 9e1ba7c FV3 (heads/develop) 9d05172b711f4ab5d6f978dbe575bd67a681b55a NEMS (heads/develop) 96e3f3a8fa0389a4b110b0fa23e7a414f6d92038 WW3 (6.07.1-50-g96e3f3a8) ffdd19bc6c1df747394b7e9958a76238fcd44242 stochastic_physics (ufs-v1.0.0-70-gffdd19b) - changed compilation options in build_fv3.sh - removed fv3gfs.fd_jkh directory since changes are already in develop branch - updated getic script to retrieve files after 00Z 26Feb20 from mass store with prefix name of 'com' * Issue #1 - update WAFS tag to gfs_wafs.v6.0.8 * Issue #94 fix for failing silently * updates for EE2 from waves * last of EE2 changes * update resources and trigger from 192->180 * bug fix in exgfs_wave_post_pnt.sh * fix resource time estimates * reverting changes to configs that were not intented to be committed * Issue #1 - updates for modules and small fixes - fix to run ens_tracker without tclogg module in modulefiles/module_base.wcoss_dell_p3 - fix to sorc/syndat_qctropcy.fd/qctropcy.f for compile warning - fix to gfswaveawipsbulls dependency in setup scripts - update to bufr/11.3.0 from bufr/11.2.0 in modulefiles - add override ability for POE for prep jobs in env/WCOSS_DELL_P3.env * issue #145 change dev path to prod for parallel netcdf modules * issue #145 change dev path to prod for parallel netcdf modules * issue #142 add 6 bufr stations for Thailand TMD * issue #142 add 6 bufr station data * issue #142 generate station i,j grid * issue #142 generate station i,j grid * issue #142 generate station i,j grid * Issue #1 - adjust error handling in wave rocoto job scripts * Issue #1 - update component tags and modulefiles for nwtest lib updates, remove unneeded module load and modulefile from downstream wave job rocoto scripts * Issue #1 - update GSI tag to gfsda.v16.0.0 * Issue #1 - remove unneeded line in vrfy.sh and update link_fv3gfs.sh for UFS_UTILS execs * Issue #1 - config updates from real-time parallel * Issue #1 - update g2tmpl module load in modulefiles/module_base.wcoss_dell_p3 * Issue #1 - update prep job resources * Issue #1 - update config.fv3 based on real-time parallel * Issue #1 - move ABIBF, AHIBF, and HDOB pointers into RUN_ENVIR=emc block * Issue #1 - remove hardcoded POE and BACK values from config.prep * Issue #1 - return POE=YES and BACK=off setting for prep on WCOSS_DELL_P3 * for rocoto add a dependency to wavepostpnt job on wavepostbndpnt so that both jobs will not run at the same time which will slow both jobs down. This is the reason for the dependency, otherwise there is not a "true" dependency between the jobs * Issue #1 - remove unneeded DMPDIR and ICSDIR from config.base.nco.static * Issue #1 - remove POE/BACK block from config.prep and set POE=YES/BACK=off as defaults in env/WCOSS_DELL_P3.env prep section * Issue #1 - update WAFS tag to gfs_wafs.v6.0.9 * Temporarily peg GSI checkout to hash of release branch * add a dependency for the wavepostpnt on wavepostbndpnt for just gfs as this job does not exist for gdas * Modify module for each job to match implementation package change Modify two wafs jobs trigger Modify wall clock and resource for running jobs in NCO Modify obsproc package location * updates to parm to reduce the number of wave variables changes to the config so that wave models are interpolated to the multi_1 masked files for the regional output grids * Issue #1 - update to fbwndgfs modulefiles for WCOSS-Dell and WCOSS-Cray * Change config.resources for eobs for low resolution cases * Issue #1 - update gfs_util modulefiles * Issue #1 - update config.fv3 and config.resources with v16rt2 values * Issue #1 - update WAFS tag to gfs_wafs.v6.0.10 and change WAFS job dependencies * Modify two wafs jobs trigger as: jgfs_atmos_wafs_grib2 trigger ../../post/jgfs_atmos_post_f000 == complete jgfs_atmos_wafs_grib2_0p25 trigger ../../post/jgfs_atmos_post_f036 == complete * Issue #1 - update link_fv3gfs.sh to point to newly frozen fix_nco_gfsv16 FIX_DIR * Modify gfs/gdas post job to 20 minutes in wall clock. * updates to add glo_30m to the created grib files for waves for awips processing * Issue #94 producing awips files with masks and deleting wmo headers for arctic ocean * Issue #1 - adding release notes for GFSv16 * Issue #1 - adjust WAFS dependencies to wait for f036 post output * Add wave env updates into ORION.env, increase waveinit tasks, and update resources for analysis and efcs walltimes * Update .gitignore for script renaming and removed external files * Issue #1 - update FV3 tag to GFS.v16.0.14 for Hera/Orion build support * Issue #1 - new FV3 tag that builds on Hera/Orion and update for building/running high res system on Hera * Issue #1 - save GFSv16 hand-off resource settings into new static nco configs * Issue #1 - add FDATE to config.base * Issue #1 - add parm mon folder to ignore list and move parm section of ignore list up * Issue #1 - pull in corrected npe_eobs values in config.resources * Add UPP netcdf module library load to HERA.env to resolve runtime netcdf version mismatch * Issue #1 - increase C768 npe_eobs to 200 for Hera nodes with less memory * Issue #1 - resource updates from low res testing - set io_layout to "1,1" for low res gfs in config.fcst - set npe_wav[_gfs] to 140 for all resolutions, same wave grid - increase nth_fv3 to 4 for C192 and C384 - set smaller walltime for gfsfcst when resolutions less than C768 * Issue #1 - fix firstcyc queue bug in workflow_utils.py on WCOSS * Issue #1 - add wtime_fcst_gfs time of 4hrs for C384 * Fix wrong DATE in new if-block in config.anal for cold start checking * Issue #1 - increase wavepostbndpnt and wavepostpnt walltimes to give more time on Hera * Cycled warm start run using develop ufs-weather-model branch and feature/ccpp using merged branch on the 10/13 (4da0f) with feature/gfsv16b (31563). CPP_SUITE="FV3_GFS_v16beta" build_fv3 option: CCPP=Y 32BIT=Y SUITES=FV3_GFS_v15,FV3_GSD_v0,FV3_GSD_noah,FV3_GFS_v16beta wave is turned off for this test because it's for atmospheric physics and comparison. * Issue #1 - update WAFS tag to gfs_wafs.v6.0.12 for removal of in-cloud turbulence per AWC * Rename Release_Notes.gfs.v16.0.0.txt to Release_Notes.gfs.v16.0.0.md * Issue #1 - adjust epos groups for DOIAU/DOIAU_ENKF=NO * Issue #1 - update anal, eobs, and eupd resources for low res * Issue #1 - update WAFS tag to gfs_wafs.v6.0.13 * Revert epos change in setup_workflow.py * modified: jobs/JGFS_ATMOS_POSTSND and jobs/rocoto/postsnd.sh to remove redundant variables in the two scripts and make them work for both EMC and NCO parallels. * Issue #1 - update WAFS tag to gfs_wafs.v6.0.14 and update dumpjb version to 5.1.0 * Reduce C384 nth_fv3 to 1 in config.fv3 * Add FDATE calculation to setup scripts and change FDATE in to parsed value in config.base.emc.dyn * Set nth_fcst to 4 for C384 on Hera to handle less memory * Increase gfsfcst walltime for C192 * Tie DOIAU_ENKF to DOIAU and add DOIAU check for IAU_OFFSET and IAU_FHROT in config.base * Set nth_fcst to 4 for C384 deterministic * Hera updates for OUTPUT_FILETYPES and resources * Change wavepostbndpnt to wait for fcst to end * As of 11/12/2020, this package is tested with a C768 cycled (6 cycle) run on Dell system using FV3_GFS_v16beta (imp_physics=11). The wave components are turned off. Ready to merge back to the development. The expdir and log files are available on HPSS: /NCEPDEV/emc-global/1year/Lin.Gan/WCOSS_DELL_P3/feature_ccpp/FV3_GFS_v16beta/FV3_GFS_v16beta-LOG.tar /NCEPDEV/emc-global/1year/Lin.Gan/WCOSS_DELL_P3/feature_ccpp/FV3_GFS_v16beta/FV3_GFS_v16beta-EXPT.tar File parm/config/config.resources has been modified to fix EUPD job issue in job card resource. File sorc/build_fv3.sh and sorc/link_fv3gfs.sh changed to clear up development remark. Removed a developer directory that is not required for FV3_GFS_v16beta confiruration. * Changes to be committed: modified: jobs/rocoto/fcst.sh deleted: modulefiles/module_base.wcoss_dell_p3_fcst deleted: parm/config/config.aeroic modified: parm/config/config.base.emc.dyn modified: parm/config/config.resources modified: sorc/build_fv3.sh modified: sorc/checkout.sh modified: sorc/link_fv3gfs.sh deleted: ush/load_fv3gfs_modules_fcst.sh deleted: ush/rocoto/setup_workflow_fcstonly_aeroic.py * deleted: jobs/rocoto/aeroic.sh * Remove GSD suite file and aero IC extract util * sync config.base.emc.dyn and config.resources with development * modified: parm/config/config.base.emc.dyn parm/config/config.base.nco.static scripts/exglobal_forecast.sh sorc/build_all.sh sorc/build_fv3.sh sorc/checkout.sh to add the option to check out ufs_weather_model and run with CCPP phsyics * Merge with v16ccpp modified: parm/config/config.base.emc.dyn modified: parm/config/config.resources modified: scripts/exglobal_forecast.sh modified: sorc/build_fv3.sh modified: sorc/checkout.sh * update eupd resource * Remove development configuration from config.nsst * modified: ../scripts/exglobal_forecast.sh modified: build_all.sh build_fv3.sh to automatically detect model version, CCPP vs IPD * Modified build_all.sh checkout.sh partial_build.sh to allow switch turn on/off ccpp option Turn on CCPP usage: checkout.sh -c build_all.sh -c Turn off CCPP usage: checkout.sh build_all.sh * Clean up development code from build_all * modified: build_fv3.sh * modified: exglobal_forecast.sh to add min_lakeice = ${min_lakeice:-"0.15"} min_seaice = ${min_seaice:-"0.15"} * bug fix exglobal_forecast.sh * modified: ../parm/config/config.fcst and exglobal_forecast.sh 1. use iovr for model after NCAR/ccpp-physics#514 and iovr_sw and iovr_lw for older version of the model, controled by RUN_CCPP 2. remove the if block and use atmos_model_nml to turn on/off the CCPP option * modified checkout.sh to check out a hash instead of head of the develop branch * modified: ../scripts/exglobal_forecast.sh * Modify exglobal_forecast.sh to create namelist in runable sequence. * As requested, using 2e25df5 for ufs-weather-model. * scripts/exglobal_forecast.sh Merge with v16ccpp * Modify build_all.sh while getopts "oc" option to while getopts "c" option * Fix missing COMROOT setting on Orion * Adjust efcs walltime and eupd thread value on Orion * gfsv16 physics; script updates * update IC scripts * model configure changes; preserve $DATA in postdet * update /driver; /parm and /ecflow folder to match gfsv16 * Revert "update /driver; /parm and /ecflow folder to match gfsv16" This reverts commit 45341b6. * configuration update * preserve /atmos level COM directory * typo fix * Coupled/devmerge (#203) * update to waves scripts for merging with develop - synced with develop where necessary and left changes in prep and gridded post for coupled-crow updates that should remain * removing ecflow scripts that are not in develop branch * removing files from branch that do not appear in develop branch and were not added for coupling in the coupled-crow branch * updating sorc and ush files to match dev when these are not files changes intentionally in coupled-crow branch and therefore should match develop branch * updating files to match develop that were not matching through merge but should match develop branch * cleaning up evn files after merge with develop * cleaning up differences in jobs/rocoto folder from develop branch as it does not seem that the changes here were made intentionally in feature/coupled-crow so this brings us insync with the develop branch * resolving differences between develop and this branch in terms of wave variables for jobs/JGLOBAL_FORECAST * updating module file to match develop * updates for wave model so that the forecast runs -- atm post still does not work * fix typo * Fixes for issue #202 (FINDDATE) and issue #208 (postsnd.sh permissions) * coupled: updates for merging checkout, build and link with develop branch (#206) * update to waves scripts for merging with develop - synced with develop where necessary and left changes in prep and gridded post for coupled-crow updates that should remain * removing ecflow scripts that are not in develop branch * removing files from branch that do not appear in develop branch and were not added for coupling in the coupled-crow branch * updating sorc and ush files to match dev when these are not files changes intentionally in coupled-crow branch and therefore should match develop branch * updating files to match develop that were not matching through merge but should match develop branch * cleaning up evn files after merge with develop * cleaning up differences in jobs/rocoto folder from develop branch as it does not seem that the changes here were made intentionally in feature/coupled-crow so this brings us insync with the develop branch * resolving differences between develop and this branch in terms of wave variables for jobs/JGLOBAL_FORECAST * updating module file to match develop * updates for wave model so that the forecast runs -- atm post still does not work * fix typo * updating .gitignore to match develop a little better * cleaning up differences between checkout and link with merging to develop * updates for build and checkout scripts to unify with develop and simplify build_all to add an option for coupling * fix typo in build all script * updating .gitignore for linked files missing from list * add fix files for ocean post * changing -p to -c option and adding coupled to the ccpp -c * configuration and minor script update for inline post * bug fix for vrfy job in layout file; missing namelist variable fix * updates that are needed after merging * Issue #201 - workaround for failing post000 job before hpc-stack solution * Issue #189 - update ufs-weather-model hash * Coupled/devmerge 3 (#219) * update for making post work without inline post * add in linking capabilities * updating module file so that atm pos will work (#214) Co-authored-by: JessicaMeixner-NOAA <Jessica.Meixner@noaa.gov> * set inline_post off for default file dependencies for post job triggering updated * add new parameters into /default * clean up excessive logic clause in namelist parsing scripts * match default value of some namelist variables * name list update for CCPP suite "FV3_GFS_v16beta_coupled" update CCPP suite selection in test case file create prototype 5.1 case file with updated CCPP suite Making each CCPP suite a selectable option is beneficial, because this could handle future development when they start to differ from each other. * change CCPP suite back to FV3_GFS_v15p2_coupled in case file * bugfix for iovr variables Co-authored-by: lin.gan <lin.gan@noaa.gov> Co-authored-by: kate.friedman <kate.friedman@noaa.gov> Co-authored-by: wx21rph <Roberto.Padilla@m71a1.ncep.noaa.gov> Co-authored-by: russ.treadon <Russ.Treadon@noaa.gov> Co-authored-by: Jessica Meixner <jessica.meixner@noaa.gov> Co-authored-by: fanglin.yang <fanglin.yang@noaa.gov> Co-authored-by: Guang Ping Lou <guang.ping.lou@noaa.gov> Co-authored-by: BoiVuong-NOAA <Boi.Vuong@noaa.gov> Co-authored-by: Wen Meng <wen.meng@noaa.gov> Co-authored-by: Judy.K.Henderson <Judy.K.Henderson@noaa.gov> Co-authored-by: Roberto Padilla <Roberto.Padilla@noaa.gov> Co-authored-by: CoryMartin-NOAA <cory.r.martin@noaa.gov> Co-authored-by: wx21rph <Roberto.Padilla@m71a3.ncep.noaa.gov> Co-authored-by: lgannoaa <37596169+lgannoaa@users.noreply.github.com>

Squashed commit of the following: commit ef8b64150a0cb7137b1ec48e9c8f3c7e9b3223de Merge: fca3433b cffc5682 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Mon Jan 4 10:52:08 2021 -0500 Merge pull request #231 from yangfanglin/feature/multiple_restart modified exglobal_forecast.sh to enable multiple reruns from breakpoint restart initial conditions commit cffc5682f34eb9ab0bbf42ee11eaa848152c0dbc Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Dec 30 18:43:34 2020 +0000 modified: exglobal_forecast.sh The breakpoint restart only works for the first restart from a breakpoint. Restart files written in RERUN_RESTRAT after the first restart has a 3-hour time shift for DO_IAU=YES cases. Forecasts starting from the 2nd breakpoint and beyond will fail becasue of incorrect initial conditins. This commit fixes this bug. commit fca3433bf869b12cade480e1394688d7b6f95687 Merge: a95cce5f abb168bc Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Dec 18 09:30:21 2020 -0500 Merge pull request #221 from NOAA-EMC/nco_v16_changes NCO changes for v16.0.3 commit abb168bc32fdff7b08ce8ecc54ea832aabf03c44 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Dec 17 19:17:26 2020 +0000 Issue #1 and issue #220 - set C192/C96/C48 npe_eobs back to dev values for develop commit 65b4d965fa6ebee445a509a0593e925ae5d5b513 Merge: a95cce5f e89045b9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Dec 17 18:46:06 2020 +0000 Issue #1 - merge v16.0.3 changes from NCO into develop commit e89045b9fb1d9026810ef5c77a3554c67c41718e Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 16 16:38:01 2020 +0000 Issue #1 - add grib_util module load to several analysis ecflow scripts commit a95cce5f3e123a241000b209fb50cc8911d13466 Merge: 1562bb97 2646921d Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Dec 15 14:05:27 2020 -0500 Merge pull request #216 from NOAA-EMC/issue189 Issue #189 - update ufs-weather-model hash commit 2646921d0da6dc8a136ebeba6cceceacf3806c23 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Dec 15 18:56:33 2020 +0000 Issue #189 - update ufs-weather-model hash commit 1562bb97ac21ce2406ed21f76b7c8d58cecf4a2a Merge: f3d11b9b 7a9bc00e Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Dec 15 09:51:07 2020 -0500 Merge pull request #213 from NOAA-EMC/hotfixes Hotfixes - issues #201, 202, 208 commit 7a9bc00e367126044f83b0fc9b737386788899a9 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Dec 14 21:35:58 2020 +0000 Issue #201 - workaround for failing post000 job before hpc-stack solution commit 425588f711812819744c8060a46444b9d4bf2b63 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Dec 14 21:06:20 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.17 for dbn_alert change commit ec5e2e5dd98d80ca3e3d696d5eb19a5a4180c87b Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Dec 14 15:06:16 2020 +0000 Issue #1 - correct gridded wave parm files for v16.0.3 commit 39246c6e1604e9e81ddc384c951861c43e30cdcf Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Dec 11 19:26:51 2020 +0000 Issue #1 - changes from NCO for GFSv16.0.3 commit b9f7de8af3cb966fa756e38feaf98ce1f84ee2f3 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Dec 10 19:15:00 2020 +0000 Issue #1 - update Externals.cfg with final tags for GFSv16.0.2 commit cff28bdbf0daa6980766a011f73e2a021aee2341 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Dec 10 15:59:05 2020 +0000 Fixes for issue #202 (FINDDATE) and issue #208 (postsnd.sh permissions) commit 7c7482de947ae686b619fc72e7dd192410b7e0f7 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Dec 10 14:10:25 2020 +0000 Issue #1 - correct permissions on jobs/rocoto/postsnd.sh commit dee856c5b54c19cc9de6898908fdb9d4f8d99baa Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 9 20:58:20 2020 +0000 Issue #1 - update gempak version to 7.3.3 in the ecflow gfs.ver file commit 0ee264bef7ea71d32426b6b6d77109e73b4235ff Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 9 18:49:54 2020 +0000 Issue #1 - update gempak and dumpjb versions to 7.3.3 and 5.1.0 respectively commit b5d97ab6912596d3b343843ba3ef6e8c5f71a21a Merge: 6da1a24b be5f9ece Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Dec 7 14:49:29 2020 -0500 Merge pull request #205 from NOAA-EMC/release/gfsv16.0.0.nco Script alert updates from NCO for wave downstream commit be5f9ece8329ee6b18af92d044809f018404669b Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Dec 7 19:45:23 2020 +0000 Script alert updates from NCO for wave downstream commit 6da1a24ba89c80ee5f5df38136d03483207d39dd Merge: ce1ae970 069f2662 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Dec 7 14:12:37 2020 -0500 Merge pull request #204 from NOAA-EMC/release/gfsv16.0.0.nco GFSv16 NCO changes - early December edition commit 069f2662bc2eabc822f13eec4e2f69f1c39606a8 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 2 20:01:17 2020 +0000 Add override for COMIN_WAV_RTOFS in emc mode for waveprep job commit 194f280cf7351d58b0295af35c91e74ac6925d0b Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Nov 30 18:47:19 2020 +0000 Issue #197: place CDATE specific sections of config.anal and config.prep inside RUN_ENVIR=emc blocks. These sections are use for retrospective parallels and therefore do not need to be executed in operations (NCO). commit d82efa8417fe6247ed08cd74a447460ba6bb51f9 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 30 18:06:12 2020 +0000 modified: JGLOBAL_FORECAST commit 25a28c8dacc8659071eca65be15fb4de08b18d80 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 30 17:02:05 2020 +0000 modified: JGLOBAL_FORECAST to make it work for both emc and nco running environments. commit 7283c7e60c98639c6466ce5903ab03c36a7f5f57 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 27 22:16:31 2020 +0000 modified: JGLOBAL_FORECAST A test showed that jobid is not defined in JGLOBAL_FORECAST running in the Rocoto environment. jobid is defined in ./env files. Defining DATA without sourcing ./env/$nachine.env caused the script to fail. Move the definitin of DATA after sourcing env parameters commit e6003773c0af51bd15eb2bdb6831c99dcce1cc5b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Nov 24 03:25:23 2020 +0000 modified: checkout.sh to use WAFS tag gfs_wafs.v6.0.16 commit bd5294ee6844f8a5adbd04eae78999068c0961a2 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sat Nov 21 17:32:05 2020 +0000 modified: checkout.sh to update UPP to upp_gfsv16_release.v1.1.1, a minor syntax bug fix commit 5a516b4cdf0333e4b8316c8cbda7be9f9dccc543 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 20 05:08:33 2020 +0000 modified: link_fv3gfs.sh to 1) use hard copies of external fix fields and executable for NCO installation 2) use soft links for all other files and directories for both NCO and EMC installations commit 759cf3341bb400d3b3254a05a624e3ab671ef6cd Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 20 04:51:48 2020 +0000 Compared local files in NCO implementation directory with release/gfs.v16.0.0 branch, changes made by NCO(Jen Yang) in the following files are either accepted or rejected. use EMC's updated version modified: jobs/JGFS_ATMOS_POSTSND Use NCO's updated version modified: jobs/JGLOBAL_FORECAST modified: jobs/JGLOBAL_WAVE_GEMPAK modified: jobs/JGLOBAL_WAVE_POST_BNDPNT modified: jobs/JGLOBAL_WAVE_POST_PNT modified: jobs/JGLOBAL_WAVE_POST_SBS modified: jobs/JGLOBAL_WAVE_PRDGEN_BULLS modified: jobs/JGLOBAL_WAVE_PRDGEN_GRIDDED modified: parm/config/config.base.nco.static Updated by both NCO and EMC modified: parm/config/config.wave Updated gldas tag to gldas_gfsv16_release.v1.12.0 modified: sorc/checkout.sh commit f39ea0cbbabaa5e69e03cec4db309e2adfb33756 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Nov 19 04:43:17 2020 +0000 create a new branch release/gfsv16.0.0.nco to merge changes made by NCO in /gpfs/dell1/nco/ops/nwpara/gfs-v16/gfs.v16.0.1 back to EMC's repository modified: ecflow/ecf/scripts/gdas/atmos/analysis/jgdas_atmos_analysis.ecf modified: ecflow/ecf/scripts/gdas/atmos/analysis/jgdas_atmos_analysis_calc.ecf modified: ecflow/ecf/scripts/gdas/atmos/analysis/jgdas_atmos_analysis_diag.ecf modified: ecflow/ecf/scripts/gdas/atmos/gempak/jgdas_atmos_gempak.ecf modified: ecflow/ecf/scripts/gdas/atmos/gempak/jgdas_atmos_gempak_meta_ncdc.ecf modified: ecflow/ecf/scripts/gdas/atmos/init/jgdas_atmos_gldas.ecf modified: ecflow/ecf/scripts/gdas/atmos/obsproc/dump/jgdas_atmos_dump.ecf modified: ecflow/ecf/scripts/gdas/atmos/obsproc/dump/jgdas_atmos_dump_alert.ecf modified: ecflow/ecf/scripts/gdas/atmos/obsproc/dump/jgdas_atmos_dump_post.ecf modified: ecflow/ecf/scripts/gdas/atmos/obsproc/dump/jgdas_atmos_tropcy_qc_reloc.ecf modified: ecflow/ecf/scripts/gdas/atmos/obsproc/prep/jgdas_atmos_emcsfc_sfc_prep.ecf modified: ecflow/ecf/scripts/gdas/atmos/obsproc/prep/jgdas_atmos_prep.ecf modified: ecflow/ecf/scripts/gdas/atmos/obsproc/prep/jgdas_atmos_prep_post.ecf modified: ecflow/ecf/scripts/gdas/atmos/post/jgdas_atmos_post_anl.ecf modified: 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modified: ecflow/ecf/scripts/gdas/atmos/verf/jgdas_atmos_vminmon.ecf modified: ecflow/ecf/scripts/gdas/enkf/analysis/create/jgdas_enkf_diag.ecf modified: ecflow/ecf/scripts/gdas/enkf/analysis/create/jgdas_enkf_select_obs.ecf modified: ecflow/ecf/scripts/gdas/enkf/analysis/create/jgdas_enkf_update.ecf modified: ecflow/ecf/scripts/gdas/enkf/analysis/recenter/ecen/jgdas_enkf_ecen.ecf modified: ecflow/ecf/scripts/gdas/enkf/analysis/recenter/jgdas_enkf_sfc.ecf modified: ecflow/ecf/scripts/gdas/enkf/forecast/jgdas_enkf_fcst.ecf modified: ecflow/ecf/scripts/gdas/jgdas_forecast.ecf modified: ecflow/ecf/scripts/gdas/wave/init/jgdas_wave_init.ecf modified: ecflow/ecf/scripts/gdas/wave/post/jgdas_wave_postpnt.ecf modified: ecflow/ecf/scripts/gdas/wave/post/jgdas_wave_postsbs.ecf modified: ecflow/ecf/scripts/gdas/wave/prep/jgdas_wave_prep.ecf modified: ecflow/ecf/scripts/gfs/atmos/analysis/jgfs_atmos_analysis.ecf modified: ecflow/ecf/scripts/gfs/atmos/analysis/jgfs_atmos_analysis_calc.ecf 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parm/transfer_gfs_9b.list modified: parm/transfer_gfs_misc.list modified: parm/transfer_rdhpcs_gdas.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_1.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_2.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_3.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_4.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_5.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_6.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_7.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_8.list modified: parm/transfer_rdhpcs_gfs.list modified: parm/transfer_rdhpcs_gfs_nawips.list commit ce1ae9709fe506f32833910f3cf4f68117c7d0f2 Merge: b096e294 e9d00e41 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Wed Nov 18 16:55:14 2020 -0500 Merge pull request #192 from JessicaMeixner-NOAA/bf/waveICfreq wave parm update for realease/gfsv16 commit e9d00e41e939fca68a39293b973326531f3c6983 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Wed Nov 18 19:51:25 2020 +0000 update for the wave parm so that the wave model will look for the correct restart for when gfs is not run every cycle commit f3d11b9bc7e669f4c11266654649c4d5e28f16a9 Merge: e3972f17 32a004aa Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Nov 17 14:01:54 2020 -0500 Merge pull request #186 from lgannoaa/feature/ccpp Initial support for CCPP. commit 32a004aae3949e8fd3bda7a4f628995317d33f47 Merge: 66cc1a06 036cc113 Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com> Date: Tue Nov 17 13:15:37 2020 -0500 Merge pull request #2 from KateFriedman-NOAA/ccpp Adjust efcs walltime and eupd thread value on Orion commit 036cc113dcd5787ce4bccfb11fb71ed7935bc982 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Nov 17 10:44:02 2020 -0600 Adjust efcs walltime and eupd thread value on Orion commit 66cc1a062ba1b430e9ebaf41715997a3de0ff023 Merge: 9e8f9605 2432dc5b Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com> Date: Mon Nov 16 15:48:34 2020 -0500 Merge pull request #1 from KateFriedman-NOAA/ccpp Fix missing COMROOT setting for Orion commit 2432dc5bbb1b3bc4c317063811333a5b30065794 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Nov 16 14:40:59 2020 -0600 Fix missing COMROOT setting on Orion commit 9e8f960508e82f31e9d57da0fc37600b9697e4c9 Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 18:24:08 2020 +0000 Modify build_all.sh while getopts "oc" option to while getopts "c" option commit 587e1986cb5c6307f2d10a01758994ce1155e36d Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 18:21:16 2020 +0000 scripts/exglobal_forecast.sh Merge with v16ccpp commit 6066462b23d34db815ed73c630ef624c41239215 Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 17:53:44 2020 +0000 As requested, using 2e25df5fe952d27355ed58963148f46b82565469 for ufs-weather-model. commit bf312432b662c3e2b7bd8cd5de19dd5b5ee0c042 Merge: dd7b0068 d59c09c6 Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 17:41:32 2020 +0000 Merge remote-tracking branch 'upstream/v16ccpp' into feature/ccpp Pull in the iovr=3 in config.fcst commit dd7b0068cf0b598e58af41a92712e393674d14fd Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 14:39:04 2020 +0000 Modify exglobal_forecast.sh to create namelist in runable sequence. commit d59c09c6d9445110871da231ef9945d201986f81 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 16 04:06:48 2020 +0000 modified: ../scripts/exglobal_forecast.sh commit d8aa4423f1a6f2c63c00a4ed5a38a4df6501ef7b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 16 04:04:43 2020 +0000 modified checkout.sh to check out a hash instead of head of the develop branch commit e29fd0c517840a9996987e7ae21f78cc2af8ca12 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 16 03:00:50 2020 +0000 modified: ../parm/config/config.fcst and exglobal_forecast.sh 1. use iovr for model after https://github.com/NCAR/ccpp-physics/pull/514 and iovr_sw and iovr_lw for older version of the model, controled by RUN_CCPP 2. remove the if block and use atmos_model_nml to turn on/off the CCPP option commit 1ec0ebf31767422a67e3f56c951f5ccb2305c7e5 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Nov 15 17:48:51 2020 -0500 bug fix exglobal_forecast.sh commit 336647bcaced053baeee43ef2417b34b6b196439 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Nov 15 12:55:20 2020 -0500 modified: exglobal_forecast.sh to add min_lakeice = ${min_lakeice:-"0.15"} min_seaice = ${min_seaice:-"0.15"} commit 9616b2eef626ce8db2f3a5da343b0a7ece2137cb Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Nov 15 04:05:48 2020 +0000 modified: build_fv3.sh commit fe79b87abbeca26939dbcc1ccd7cb5fb2624e666 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 20:11:26 2020 +0000 Clean up development code from build_all commit 9cd719d0609cefb3261870528b88c54d24117c47 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 19:53:31 2020 +0000 Modified build_all.sh checkout.sh partial_build.sh to allow switch turn on/off ccpp option Turn on CCPP usage: checkout.sh -c build_all.sh -c Turn off CCPP usage: checkout.sh build_all.sh commit 8aed1e4d44166ffb6036409bced3ad04f038dfc4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 13 17:04:07 2020 +0000 modified: ../scripts/exglobal_forecast.sh modified: build_all.sh build_fv3.sh to automatically detect model version, CCPP vs IPD commit 7826668c6baaf113785e88b79bc059f8a430eace Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 15:44:31 2020 +0000 Remove development configuration from config.nsst commit 1e5ebe44fd525135114b0fc74a698cadd2eb5eaa Merge: 0b540d78 b0536156 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 15:36:06 2020 +0000 Merge remote-tracking branch 'upstream/v16ccpp' into feature/ccpp commit 0b540d78c47755cb0bd68a8dc934461ec1bef345 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 15:35:26 2020 +0000 update eupd resource commit 267c661710562ab620c07212626268f0201c6c20 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 15:31:56 2020 +0000 Merge with v16ccpp modified: parm/config/config.base.emc.dyn modified: parm/config/config.resources modified: scripts/exglobal_forecast.sh modified: sorc/build_fv3.sh modified: sorc/checkout.sh commit b0536156ed8383150fc65d5897c6acd17c0df248 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 13 06:30:25 2020 +0000 modified: parm/config/config.base.emc.dyn parm/config/config.base.nco.static scripts/exglobal_forecast.sh sorc/build_all.sh sorc/build_fv3.sh sorc/checkout.sh to add the option to check out ufs_weather_model and run with CCPP phsyics commit b80676925e5dca6c26d8dbf59c8ca74c0efe5fcb Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 20:18:08 2020 +0000 sync config.base.emc.dyn and config.resources with development commit 6e6fdd79515966f84334e9319dbb3b9cfff9095c Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 19:28:06 2020 +0000 Remove GSD suite file and aero IC extract util commit 8aed527d4358e131fba73785469d1fec957e619a Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 18:23:21 2020 +0000 deleted: jobs/rocoto/aeroic.sh commit d2191414c48835799e578a6010d7dbfdb6babb78 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 18:11:43 2020 +0000 Changes to be committed: modified: jobs/rocoto/fcst.sh deleted: modulefiles/module_base.wcoss_dell_p3_fcst deleted: parm/config/config.aeroic modified: parm/config/config.base.emc.dyn modified: parm/config/config.resources modified: sorc/build_fv3.sh modified: sorc/checkout.sh modified: sorc/link_fv3gfs.sh deleted: ush/load_fv3gfs_modules_fcst.sh deleted: ush/rocoto/setup_workflow_fcstonly_aeroic.py commit 490f0a73d852f709e1232d4a4a9ee7f3d95d58d9 Merge: 52f59845 e3972f17 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 15:49:48 2020 +0000 Merge remote-tracking branch 'upstream/develop' into feature/ccpp commit 52f59845f62bd9cc16b6b1197a7de04a4b4a1d86 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 15:04:33 2020 +0000 As of 11/12/2020, this package is tested with a C768 cycled (6 cycle) run on Dell system using FV3_GFS_v16beta (imp_physics=11). The wave components are turned off. Ready to merge back to the development. The expdir and log files are available on HPSS: /NCEPDEV/emc-global/1year/Lin.Gan/WCOSS_DELL_P3/feature_ccpp/FV3_GFS_v16beta/FV3_GFS_v16beta-LOG.tar /NCEPDEV/emc-global/1year/Lin.Gan/WCOSS_DELL_P3/feature_ccpp/FV3_GFS_v16beta/FV3_GFS_v16beta-EXPT.tar File parm/config/config.resources has been modified to fix EUPD job issue in job card resource. File sorc/build_fv3.sh and sorc/link_fv3gfs.sh changed to clear up development remark. Removed a developer directory that is not required for FV3_GFS_v16beta confiruration. commit e3972f1778242d696bcc4eb4a979d46373e8d193 Merge: 9f7eebaf 671856dd Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Nov 6 12:55:23 2020 -0500 Merge pull request #174 from NOAA-EMC/port2orion GFSv16 release hand-off state, Orion support, and additional low res R&D updates commit b096e2941e4817eace7d8d9e9173ca92a3f72944 Merge: 9fa9ffe9 670b97c2 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Nov 6 10:54:07 2020 -0500 Merge pull request #173 from JessicaMeixner-NOAA/bugfix/rtofsissues Updates for RTOFS preprocessing for wave model commit 671856ddf96ff4ae2df8a5feacd1b184ce9b8702 Merge: 5383477a 9f7eebaf Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Nov 5 20:43:26 2020 +0000 Sync merge with develop to resolve conflicts commit 5383477af879dd671dbab066b41eea7e2428e50f Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Nov 5 18:46:43 2020 +0000 Change wavepostbndpnt to wait for fcst to end commit 201abf3e7ed9b5cb66bec43bcb9e4d34b3c6d5f9 Merge: f4ceb182 9fa9ffe9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Nov 5 12:10:32 2020 -0600 Merge remote-tracking branch 'origin/release/gfsv16.0.0' into port2orion * origin/release/gfsv16.0.0: Issue #1 - update WAFS tag to gfs_wafs.v6.0.14 and update dumpjb version to 5.1.0 modified: jobs/JGFS_ATMOS_POSTSND and jobs/rocoto/postsnd.sh to remove redundant variables in the two scripts and make them work for both EMC and NCO parallels. Issue #1 - update WAFS tag to gfs_wafs.v6.0.13 Rename Release_Notes.gfs.v16.0.0.txt to Release_Notes.gfs.v16.0.0.md Issue #1 - update WAFS tag to gfs_wafs.v6.0.12 for removal of in-cloud turbulence per AWC commit f4ceb182685a5d6d6fb18b2e40c48ae0623a0794 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Nov 5 14:49:08 2020 +0000 Hera updates for OUTPUT_FILETYPES and resources commit 896d19529c828a62574c835d6d372701588fe758 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Nov 4 10:19:17 2020 -0600 Set nth_fcst to 4 for C384 deterministic commit 37d01e9fc68517c39b66a1ab67453b016666d590 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Nov 3 14:06:59 2020 -0600 Tie DOIAU_ENKF to DOIAU and add DOIAU check for IAU_OFFSET and IAU_FHROT in config.base commit 1a11fd21740860275f9be14caf1e615691075414 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Nov 3 14:49:12 2020 +0000 Increase gfsfcst walltime for C192 commit 670b97c2673054b8d18a004390af0093520b1968 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Mon Nov 2 20:46:33 2020 +0000 updates for checking if RTOFS files exist and only processing RTOFS files for needed fhr commit 190b78c8d34f60e84c80b47a97cb4184e4e11fd9 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Nov 2 18:41:32 2020 +0000 Set nth_fcst to 4 for C384 on Hera to handle less memory commit 713c51eabc40b80e02314b5955b0efab3b235344 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Nov 2 17:54:49 2020 +0000 Add FDATE calculation to setup scripts and change FDATE in to parsed value in config.base.emc.dyn commit 306ea5f15120d808760bd58b247b5861a8813670 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Nov 2 10:43:20 2020 -0600 Reduce C384 nth_fv3 to 1 in config.fv3 commit 9fa9ffe97d23ad69c33658875c9b0c3440c2c97f Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Nov 2 15:24:48 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.14 and update dumpjb version to 5.1.0 commit 24226384780c9c2438abec1864923f87371798d4 Merge: 70593343 a3b46385 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Oct 30 19:48:13 2020 +0000 Merge branch 'release/gfsv16.0.0' of https://github.com/NOAA-EMC/global-workflow into release/gfsv16.0.0 commit 705933436f2f42d5fde17b8aa4a57918f2c66b6a Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Oct 30 19:46:51 2020 +0000 modified: jobs/JGFS_ATMOS_POSTSND and jobs/rocoto/postsnd.sh to remove redundant variables in the two scripts and make them work for both EMC and NCO parallels. commit c9e0566eb2e6179410583c14d48a971a79dc4c88 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Oct 29 20:50:46 2020 +0000 Revert epos change in setup_workflow.py commit a3b463859154c1127bb66764a65baa89929a0a5f Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Oct 28 18:18:51 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.13 commit ab0577de3c4bbbdc58219fd1c95a142cf93b5f4a Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Oct 28 13:52:34 2020 +0000 Issue #1 - update anal, eobs, and eupd resources for low res commit 97f1ae89baf37d8bd1940f179fecb6bdc1279fa2 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Oct 27 17:52:28 2020 +0000 Issue #1 - adjust epos groups for DOIAU/DOIAU_ENKF=NO commit cb6d74e0c7363f7e54d879a97f457f7d4a37d926 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Oct 26 15:56:58 2020 -0400 Rename Release_Notes.gfs.v16.0.0.txt to Release_Notes.gfs.v16.0.0.md commit c09678fb33d0ece36de1af223b5cdf8384d5b9c3 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Oct 26 14:43:09 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.12 for removal of in-cloud turbulence per AWC commit 59f08b31916d3585aa9a4832dc9de865e3a350cf Merge: cbe5ddff 1171a622 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Oct 22 19:47:42 2020 +0000 Merge remote-tracking branch 'upstream/port2orion' into feature/ccpp commit cbe5ddff8013a03a9391eead40796f9c30d7ca28 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Oct 22 18:35:49 2020 +0000 Cycled warm start run using develop ufs-weather-model branch and feature/ccpp using merged branch on the 10/13 (4da0f) with feature/gfsv16b (31563). CPP_SUITE="FV3_GFS_v16beta" build_fv3 option: CCPP=Y 32BIT=Y SUITES=FV3_GFS_v15,FV3_GSD_v0,FV3_GSD_noah,FV3_GFS_v16beta wave is turned off for this test because it's for atmospheric physics and comparison. commit 1171a62238f0877fc8956df669f07fc9a418c145 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Oct 22 14:01:31 2020 +0000 Issue #1 - increase wavepostbndpnt and wavepostpnt walltimes to give more time on Hera commit c3bab19722a8b301e9ac4d2367b7e3e5dc2d88e7 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Oct 21 20:13:38 2020 +0000 Fix wrong DATE in new if-block in config.anal for cold start checking commit 636ded675b81b15e8b3af2a211edf44f17972cf0 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 20 19:23:16 2020 +0000 Issue #1 - add wtime_fcst_gfs time of 4hrs for C384 commit 4007f116adcde8372e590489d0faa0181babbc15 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 20 18:29:15 2020 +0000 Issue #1 - fix firstcyc queue bug in workflow_utils.py on WCOSS commit ebdb058fd138a7aa408d69c967747686ea5b77d9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 20 13:23:05 2020 -0500 Issue #1 - resource updates from low res testing - set io_layout to "1,1" for low res gfs in config.fcst - set npe_wav[_gfs] to 140 for all resolutions, same wave grid - increase nth_fv3 to 4 for C192 and C384 - set smaller walltime for gfsfcst when resolutions less than C768 commit 3f0ab6ff2dd4ca42a45e68972b1936d398b32097 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Oct 20 17:55:18 2020 +0000 Issue #1 - increase C768 npe_eobs to 200 for Hera nodes with less memory commit d5b69c49ddbd03982db79f09707a49d01ef0b443 Merge: 4ebdd230 794e6655 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Oct 20 16:56:27 2020 +0000 Merge remote-tracking branch 'origin/release/gfsv16.0.0' into port2orion * origin/release/gfsv16.0.0: Issue #1 - pull in corrected npe_eobs values in config.resources Issue #1 - update FV3 tag to GFS.v16.0.14 for Hera/Orion build support commit 4ebdd230c121a3c839829aa4ef855d80eb462549 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Oct 20 16:53:46 2020 +0000 Add UPP netcdf module library load to HERA.env to resolve runtime netcdf version mismatch commit 794e6655cb227973e47b2373d0e4c97bf297479e Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 20 16:45:58 2020 +0000 Issue #1 - pull in corrected npe_eobs values in config.resources commit 1d0cad425b1e163377bba8ace6622bbbb2d81de0 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Oct 19 19:24:55 2020 +0000 Issue #1 - add parm mon folder to ignore list and move parm section of ignore list up commit d632c87a8f2ce85d54fa45da14aa09f91a0ec680 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Oct 19 19:20:31 2020 +0000 Issue #1 - add FDATE to config.base commit 22d4118f4bc7853fa81f6505fd9aaf5bc6dab4f8 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Oct 19 19:12:29 2020 +0000 Issue #1 - save GFSv16 hand-off resource settings into new static nco configs commit 6fd73d7fdf40b291ff49193b606538b540e46139 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Oct 19 19:11:37 2020 +0000 Issue #1 - new FV3 tag that builds on Hera/Orion and update for building/running high res system on Hera commit 484550c13d8ef957478f20afd6e722f7f610bb8f Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Oct 16 15:40:35 2020 +0000 Issue #1 - update FV3 tag to GFS.v16.0.14 for Hera/Orion build support commit 58dcf6d961f7478fec64a850e7bcd19ffd8f3741 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Oct 15 15:08:38 2020 -0500 Update .gitignore for script renaming and removed external files commit e3f8df65082853baa5a22ed3b242efdae66d40ba Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Oct 15 11:59:58 2020 -0500 Add wave env updates into ORION.env, increase waveinit tasks, and update resources for analysis and efcs walltimes commit 4da0feaaf8b63ee4662be8be9c5f59d547164b0b Merge: ee0f27b3 31563a59 Author: lin.gan <lin.gan@noaa.gov> Date: Tue Oct 13 20:51:48 2020 +0000 Merge remote-tracking branch 'origin/feature/gfsv16b' into feature/ccpp commit e5e7cf1ea61d99080ec95b446c1bee45a57321a3 Merge: a1a7ac94 4b2d26db Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 13 14:25:56 2020 -0500 Sync merge with release/gfsv16.0.0 branch commit 4b2d26db3b9b66ecfdd4756bfcddb6e16f255b03 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 13 17:41:24 2020…

Squashed commit of the following: commit 479000a5e7b4b9c575784ecca400594525396556 Merge: bbf30008 5a16a7a0 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Jan 21 11:31:41 2021 -0500 Merge pull request #244 from NOAA-EMC/issue243 Issue #179 and issue #243 - update Fit2Obs to newm.1.2 tag and correct COMROOT path for Hera commit 5a16a7a010477b5bbe530a684608b151b8f05755 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jan 21 16:27:54 2021 +0000 Issue #179 and issue #243 - update Fit2Obs to newm.1.2 tag and correct COMROOT path for Hera commit bbf3000856ebb20ca761c6e7d761f5fcefad0228 Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Jan 15 18:36:20 2021 +0000 HOTFIX: Issue #241 - update EMC_verif-global tag to remove use of /tmp space commit 43ae19be02687cdc362a34e11d299009f3dd8ffc Merge: c7e6a7f8 48be4d18 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Thu Jan 14 10:35:16 2021 -0500 Merge pull request #239 from KateFriedman-NOAA/issue179 Issue #179 - update to config.vrfy for Fit2Obs tag which supports Orion commit 48be4d18263ea4f1c706c55e4b6b70d87f19c729 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Jan 14 08:38:20 2021 -0600 Issue #179 - update to config.vrfy for Fit2Obs tag which supports Orion commit c7e6a7f8c6f7b0d5648b1379633c252f165c2ca6 Merge: ef8b6415 4be7954d Author: Kate Friedman <kate.friedman@noaa.gov> Date: Wed Jan 13 14:20:49 2021 -0500 Merge pull request #237 from KateFriedman-NOAA/issue233 Update GLDAS tag to gldas_gfsv16_release.v1.13.0 commit 4be7954ddcbb56e7ee5167f6d43054d8821b6a4f Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 5 12:06:51 2021 -0600 Issue #233 - remove unnecessary extra space in tag line for gldas commit bcbdd12c39124eae14ec0b52d0a05b7c6944c27e Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Jan 5 12:03:15 2021 -0600 Issue #233 - update GLDAS tag to gldas_gfsv16_release.v1.13.0 commit ef8b64150a0cb7137b1ec48e9c8f3c7e9b3223de Merge: fca3433b cffc5682 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Mon Jan 4 10:52:08 2021 -0500 Merge pull request #231 from yangfanglin/feature/multiple_restart modified exglobal_forecast.sh to enable multiple reruns from breakpoint restart initial conditions commit cffc5682f34eb9ab0bbf42ee11eaa848152c0dbc Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Wed Dec 30 18:43:34 2020 +0000 modified: exglobal_forecast.sh The breakpoint restart only works for the first restart from a breakpoint. Restart files written in RERUN_RESTRAT after the first restart has a 3-hour time shift for DO_IAU=YES cases. Forecasts starting from the 2nd breakpoint and beyond will fail becasue of incorrect initial conditins. This commit fixes this bug. commit fca3433bf869b12cade480e1394688d7b6f95687 Merge: a95cce5f abb168bc Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Dec 18 09:30:21 2020 -0500 Merge pull request #221 from NOAA-EMC/nco_v16_changes NCO changes for v16.0.3 commit abb168bc32fdff7b08ce8ecc54ea832aabf03c44 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Dec 17 19:17:26 2020 +0000 Issue #1 and issue #220 - set C192/C96/C48 npe_eobs back to dev values for develop commit 65b4d965fa6ebee445a509a0593e925ae5d5b513 Merge: a95cce5f e89045b9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Dec 17 18:46:06 2020 +0000 Issue #1 - merge v16.0.3 changes from NCO into develop commit e89045b9fb1d9026810ef5c77a3554c67c41718e Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 16 16:38:01 2020 +0000 Issue #1 - add grib_util module load to several analysis ecflow scripts commit a95cce5f3e123a241000b209fb50cc8911d13466 Merge: 1562bb97 2646921d Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Dec 15 14:05:27 2020 -0500 Merge pull request #216 from NOAA-EMC/issue189 Issue #189 - update ufs-weather-model hash commit 2646921d0da6dc8a136ebeba6cceceacf3806c23 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Dec 15 18:56:33 2020 +0000 Issue #189 - update ufs-weather-model hash commit 1562bb97ac21ce2406ed21f76b7c8d58cecf4a2a Merge: f3d11b9b 7a9bc00e Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Dec 15 09:51:07 2020 -0500 Merge pull request #213 from NOAA-EMC/hotfixes Hotfixes - issues #201, 202, 208 commit 7a9bc00e367126044f83b0fc9b737386788899a9 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Dec 14 21:35:58 2020 +0000 Issue #201 - workaround for failing post000 job before hpc-stack solution commit 425588f711812819744c8060a46444b9d4bf2b63 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Dec 14 21:06:20 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.17 for dbn_alert change commit ec5e2e5dd98d80ca3e3d696d5eb19a5a4180c87b Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Dec 14 15:06:16 2020 +0000 Issue #1 - correct gridded wave parm files for v16.0.3 commit 39246c6e1604e9e81ddc384c951861c43e30cdcf Author: kate.friedman <kate.friedman@noaa.gov> Date: Fri Dec 11 19:26:51 2020 +0000 Issue #1 - changes from NCO for GFSv16.0.3 commit b9f7de8af3cb966fa756e38feaf98ce1f84ee2f3 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Dec 10 19:15:00 2020 +0000 Issue #1 - update Externals.cfg with final tags for GFSv16.0.2 commit cff28bdbf0daa6980766a011f73e2a021aee2341 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Dec 10 15:59:05 2020 +0000 Fixes for issue #202 (FINDDATE) and issue #208 (postsnd.sh permissions) commit 7c7482de947ae686b619fc72e7dd192410b7e0f7 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Dec 10 14:10:25 2020 +0000 Issue #1 - correct permissions on jobs/rocoto/postsnd.sh commit dee856c5b54c19cc9de6898908fdb9d4f8d99baa Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 9 20:58:20 2020 +0000 Issue #1 - update gempak version to 7.3.3 in the ecflow gfs.ver file commit 0ee264bef7ea71d32426b6b6d77109e73b4235ff Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 9 18:49:54 2020 +0000 Issue #1 - update gempak and dumpjb versions to 7.3.3 and 5.1.0 respectively commit b5d97ab6912596d3b343843ba3ef6e8c5f71a21a Merge: 6da1a24b be5f9ece Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Dec 7 14:49:29 2020 -0500 Merge pull request #205 from NOAA-EMC/release/gfsv16.0.0.nco Script alert updates from NCO for wave downstream commit be5f9ece8329ee6b18af92d044809f018404669b Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Dec 7 19:45:23 2020 +0000 Script alert updates from NCO for wave downstream commit 6da1a24ba89c80ee5f5df38136d03483207d39dd Merge: ce1ae970 069f2662 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Dec 7 14:12:37 2020 -0500 Merge pull request #204 from NOAA-EMC/release/gfsv16.0.0.nco GFSv16 NCO changes - early December edition commit 069f2662bc2eabc822f13eec4e2f69f1c39606a8 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Dec 2 20:01:17 2020 +0000 Add override for COMIN_WAV_RTOFS in emc mode for waveprep job commit 194f280cf7351d58b0295af35c91e74ac6925d0b Author: russ.treadon <Russ.Treadon@noaa.gov> Date: Mon Nov 30 18:47:19 2020 +0000 Issue #197: place CDATE specific sections of config.anal and config.prep inside RUN_ENVIR=emc blocks. These sections are use for retrospective parallels and therefore do not need to be executed in operations (NCO). commit d82efa8417fe6247ed08cd74a447460ba6bb51f9 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 30 18:06:12 2020 +0000 modified: JGLOBAL_FORECAST commit 25a28c8dacc8659071eca65be15fb4de08b18d80 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 30 17:02:05 2020 +0000 modified: JGLOBAL_FORECAST to make it work for both emc and nco running environments. commit 7283c7e60c98639c6466ce5903ab03c36a7f5f57 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 27 22:16:31 2020 +0000 modified: JGLOBAL_FORECAST A test showed that jobid is not defined in JGLOBAL_FORECAST running in the Rocoto environment. jobid is defined in ./env files. Defining DATA without sourcing ./env/$nachine.env caused the script to fail. Move the definitin of DATA after sourcing env parameters commit e6003773c0af51bd15eb2bdb6831c99dcce1cc5b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Tue Nov 24 03:25:23 2020 +0000 modified: checkout.sh to use WAFS tag gfs_wafs.v6.0.16 commit bd5294ee6844f8a5adbd04eae78999068c0961a2 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sat Nov 21 17:32:05 2020 +0000 modified: checkout.sh to update UPP to upp_gfsv16_release.v1.1.1, a minor syntax bug fix commit 5a516b4cdf0333e4b8316c8cbda7be9f9dccc543 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 20 05:08:33 2020 +0000 modified: link_fv3gfs.sh to 1) use hard copies of external fix fields and executable for NCO installation 2) use soft links for all other files and directories for both NCO and EMC installations commit 759cf3341bb400d3b3254a05a624e3ab671ef6cd Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 20 04:51:48 2020 +0000 Compared local files in NCO implementation directory with release/gfs.v16.0.0 branch, changes made by NCO(Jen Yang) in the following files are either accepted or rejected. use EMC's updated version modified: jobs/JGFS_ATMOS_POSTSND Use NCO's updated version modified: jobs/JGLOBAL_FORECAST modified: jobs/JGLOBAL_WAVE_GEMPAK modified: jobs/JGLOBAL_WAVE_POST_BNDPNT modified: jobs/JGLOBAL_WAVE_POST_PNT modified: jobs/JGLOBAL_WAVE_POST_SBS modified: jobs/JGLOBAL_WAVE_PRDGEN_BULLS modified: jobs/JGLOBAL_WAVE_PRDGEN_GRIDDED modified: parm/config/config.base.nco.static Updated by both NCO and EMC modified: parm/config/config.wave Updated gldas tag to gldas_gfsv16_release.v1.12.0 modified: sorc/checkout.sh commit f39ea0cbbabaa5e69e03cec4db309e2adfb33756 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Thu Nov 19 04:43:17 2020 +0000 create a new branch release/gfsv16.0.0.nco to merge changes made by NCO in /gpfs/dell1/nco/ops/nwpara/gfs-v16/gfs.v16.0.1 back to EMC's repository modified: ecflow/ecf/scripts/gdas/atmos/analysis/jgdas_atmos_analysis.ecf modified: 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parm/transfer_gfs_9b.list modified: parm/transfer_gfs_misc.list modified: parm/transfer_rdhpcs_gdas.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_1.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_2.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_3.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_4.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_5.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_6.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_7.list modified: parm/transfer_rdhpcs_gdas_enkf_enkf_8.list modified: parm/transfer_rdhpcs_gfs.list modified: parm/transfer_rdhpcs_gfs_nawips.list commit ce1ae9709fe506f32833910f3cf4f68117c7d0f2 Merge: b096e294 e9d00e41 Author: Fanglin Yang <fanglin.yang@noaa.gov> Date: Wed Nov 18 16:55:14 2020 -0500 Merge pull request #192 from JessicaMeixner-NOAA/bf/waveICfreq wave parm update for realease/gfsv16 commit e9d00e41e939fca68a39293b973326531f3c6983 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Wed Nov 18 19:51:25 2020 +0000 update for the wave parm so that the wave model will look for the correct restart for when gfs is not run every cycle commit f3d11b9bc7e669f4c11266654649c4d5e28f16a9 Merge: e3972f17 32a004aa Author: Kate Friedman <kate.friedman@noaa.gov> Date: Tue Nov 17 14:01:54 2020 -0500 Merge pull request #186 from lgannoaa/feature/ccpp Initial support for CCPP. commit 32a004aae3949e8fd3bda7a4f628995317d33f47 Merge: 66cc1a06 036cc113 Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com> Date: Tue Nov 17 13:15:37 2020 -0500 Merge pull request #2 from KateFriedman-NOAA/ccpp Adjust efcs walltime and eupd thread value on Orion commit 036cc113dcd5787ce4bccfb11fb71ed7935bc982 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Nov 17 10:44:02 2020 -0600 Adjust efcs walltime and eupd thread value on Orion commit 66cc1a062ba1b430e9ebaf41715997a3de0ff023 Merge: 9e8f9605 2432dc5b Author: lgannoaa <37596169+lgannoaa@users.noreply.github.com> Date: Mon Nov 16 15:48:34 2020 -0500 Merge pull request #1 from KateFriedman-NOAA/ccpp Fix missing COMROOT setting for Orion commit 2432dc5bbb1b3bc4c317063811333a5b30065794 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Nov 16 14:40:59 2020 -0600 Fix missing COMROOT setting on Orion commit 9e8f960508e82f31e9d57da0fc37600b9697e4c9 Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 18:24:08 2020 +0000 Modify build_all.sh while getopts "oc" option to while getopts "c" option commit 587e1986cb5c6307f2d10a01758994ce1155e36d Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 18:21:16 2020 +0000 scripts/exglobal_forecast.sh Merge with v16ccpp commit 6066462b23d34db815ed73c630ef624c41239215 Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 17:53:44 2020 +0000 As requested, using 2e25df5fe952d27355ed58963148f46b82565469 for ufs-weather-model. commit bf312432b662c3e2b7bd8cd5de19dd5b5ee0c042 Merge: dd7b0068 d59c09c6 Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 17:41:32 2020 +0000 Merge remote-tracking branch 'upstream/v16ccpp' into feature/ccpp Pull in the iovr=3 in config.fcst commit dd7b0068cf0b598e58af41a92712e393674d14fd Author: Lin.Gan <lin.gan@noaa.gov> Date: Mon Nov 16 14:39:04 2020 +0000 Modify exglobal_forecast.sh to create namelist in runable sequence. commit d59c09c6d9445110871da231ef9945d201986f81 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 16 04:06:48 2020 +0000 modified: ../scripts/exglobal_forecast.sh commit d8aa4423f1a6f2c63c00a4ed5a38a4df6501ef7b Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 16 04:04:43 2020 +0000 modified checkout.sh to check out a hash instead of head of the develop branch commit e29fd0c517840a9996987e7ae21f78cc2af8ca12 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Mon Nov 16 03:00:50 2020 +0000 modified: ../parm/config/config.fcst and exglobal_forecast.sh 1. use iovr for model after https://github.com/NCAR/ccpp-physics/pull/514 and iovr_sw and iovr_lw for older version of the model, controled by RUN_CCPP 2. remove the if block and use atmos_model_nml to turn on/off the CCPP option commit 1ec0ebf31767422a67e3f56c951f5ccb2305c7e5 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Nov 15 17:48:51 2020 -0500 bug fix exglobal_forecast.sh commit 336647bcaced053baeee43ef2417b34b6b196439 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Nov 15 12:55:20 2020 -0500 modified: exglobal_forecast.sh to add min_lakeice = ${min_lakeice:-"0.15"} min_seaice = ${min_seaice:-"0.15"} commit 9616b2eef626ce8db2f3a5da343b0a7ece2137cb Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Sun Nov 15 04:05:48 2020 +0000 modified: build_fv3.sh commit fe79b87abbeca26939dbcc1ccd7cb5fb2624e666 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 20:11:26 2020 +0000 Clean up development code from build_all commit 9cd719d0609cefb3261870528b88c54d24117c47 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 19:53:31 2020 +0000 Modified build_all.sh checkout.sh partial_build.sh to allow switch turn on/off ccpp option Turn on CCPP usage: checkout.sh -c build_all.sh -c Turn off CCPP usage: checkout.sh build_all.sh commit 8aed1e4d44166ffb6036409bced3ad04f038dfc4 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 13 17:04:07 2020 +0000 modified: ../scripts/exglobal_forecast.sh modified: build_all.sh build_fv3.sh to automatically detect model version, CCPP vs IPD commit 7826668c6baaf113785e88b79bc059f8a430eace Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 15:44:31 2020 +0000 Remove development configuration from config.nsst commit 1e5ebe44fd525135114b0fc74a698cadd2eb5eaa Merge: 0b540d78 b0536156 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 15:36:06 2020 +0000 Merge remote-tracking branch 'upstream/v16ccpp' into feature/ccpp commit 0b540d78c47755cb0bd68a8dc934461ec1bef345 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 15:35:26 2020 +0000 update eupd resource commit 267c661710562ab620c07212626268f0201c6c20 Author: Lin.Gan <lin.gan@noaa.gov> Date: Fri Nov 13 15:31:56 2020 +0000 Merge with v16ccpp modified: parm/config/config.base.emc.dyn modified: parm/config/config.resources modified: scripts/exglobal_forecast.sh modified: sorc/build_fv3.sh modified: sorc/checkout.sh commit b0536156ed8383150fc65d5897c6acd17c0df248 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Nov 13 06:30:25 2020 +0000 modified: parm/config/config.base.emc.dyn parm/config/config.base.nco.static scripts/exglobal_forecast.sh sorc/build_all.sh sorc/build_fv3.sh sorc/checkout.sh to add the option to check out ufs_weather_model and run with CCPP phsyics commit b80676925e5dca6c26d8dbf59c8ca74c0efe5fcb Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 20:18:08 2020 +0000 sync config.base.emc.dyn and config.resources with development commit 6e6fdd79515966f84334e9319dbb3b9cfff9095c Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 19:28:06 2020 +0000 Remove GSD suite file and aero IC extract util commit 8aed527d4358e131fba73785469d1fec957e619a Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 18:23:21 2020 +0000 deleted: jobs/rocoto/aeroic.sh commit d2191414c48835799e578a6010d7dbfdb6babb78 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 18:11:43 2020 +0000 Changes to be committed: modified: jobs/rocoto/fcst.sh deleted: modulefiles/module_base.wcoss_dell_p3_fcst deleted: parm/config/config.aeroic modified: parm/config/config.base.emc.dyn modified: parm/config/config.resources modified: sorc/build_fv3.sh modified: sorc/checkout.sh modified: sorc/link_fv3gfs.sh deleted: ush/load_fv3gfs_modules_fcst.sh deleted: ush/rocoto/setup_workflow_fcstonly_aeroic.py commit 490f0a73d852f709e1232d4a4a9ee7f3d95d58d9 Merge: 52f59845 e3972f17 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 15:49:48 2020 +0000 Merge remote-tracking branch 'upstream/develop' into feature/ccpp commit 52f59845f62bd9cc16b6b1197a7de04a4b4a1d86 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Nov 12 15:04:33 2020 +0000 As of 11/12/2020, this package is tested with a C768 cycled (6 cycle) run on Dell system using FV3_GFS_v16beta (imp_physics=11). The wave components are turned off. Ready to merge back to the development. The expdir and log files are available on HPSS: /NCEPDEV/emc-global/1year/Lin.Gan/WCOSS_DELL_P3/feature_ccpp/FV3_GFS_v16beta/FV3_GFS_v16beta-LOG.tar /NCEPDEV/emc-global/1year/Lin.Gan/WCOSS_DELL_P3/feature_ccpp/FV3_GFS_v16beta/FV3_GFS_v16beta-EXPT.tar File parm/config/config.resources has been modified to fix EUPD job issue in job card resource. File sorc/build_fv3.sh and sorc/link_fv3gfs.sh changed to clear up development remark. Removed a developer directory that is not required for FV3_GFS_v16beta confiruration. commit e3972f1778242d696bcc4eb4a979d46373e8d193 Merge: 9f7eebaf 671856dd Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Nov 6 12:55:23 2020 -0500 Merge pull request #174 from NOAA-EMC/port2orion GFSv16 release hand-off state, Orion support, and additional low res R&D updates commit b096e2941e4817eace7d8d9e9173ca92a3f72944 Merge: 9fa9ffe9 670b97c2 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Fri Nov 6 10:54:07 2020 -0500 Merge pull request #173 from JessicaMeixner-NOAA/bugfix/rtofsissues Updates for RTOFS preprocessing for wave model commit 671856ddf96ff4ae2df8a5feacd1b184ce9b8702 Merge: 5383477a 9f7eebaf Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Nov 5 20:43:26 2020 +0000 Sync merge with develop to resolve conflicts commit 5383477af879dd671dbab066b41eea7e2428e50f Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Nov 5 18:46:43 2020 +0000 Change wavepostbndpnt to wait for fcst to end commit 201abf3e7ed9b5cb66bec43bcb9e4d34b3c6d5f9 Merge: f4ceb182 9fa9ffe9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Thu Nov 5 12:10:32 2020 -0600 Merge remote-tracking branch 'origin/release/gfsv16.0.0' into port2orion * origin/release/gfsv16.0.0: Issue #1 - update WAFS tag to gfs_wafs.v6.0.14 and update dumpjb version to 5.1.0 modified: jobs/JGFS_ATMOS_POSTSND and jobs/rocoto/postsnd.sh to remove redundant variables in the two scripts and make them work for both EMC and NCO parallels. Issue #1 - update WAFS tag to gfs_wafs.v6.0.13 Rename Release_Notes.gfs.v16.0.0.txt to Release_Notes.gfs.v16.0.0.md Issue #1 - update WAFS tag to gfs_wafs.v6.0.12 for removal of in-cloud turbulence per AWC commit f4ceb182685a5d6d6fb18b2e40c48ae0623a0794 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Nov 5 14:49:08 2020 +0000 Hera updates for OUTPUT_FILETYPES and resources commit 896d19529c828a62574c835d6d372701588fe758 Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Nov 4 10:19:17 2020 -0600 Set nth_fcst to 4 for C384 deterministic commit 37d01e9fc68517c39b66a1ab67453b016666d590 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Nov 3 14:06:59 2020 -0600 Tie DOIAU_ENKF to DOIAU and add DOIAU check for IAU_OFFSET and IAU_FHROT in config.base commit 1a11fd21740860275f9be14caf1e615691075414 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Nov 3 14:49:12 2020 +0000 Increase gfsfcst walltime for C192 commit 670b97c2673054b8d18a004390af0093520b1968 Author: jessica.meixner <Jessica.Meixner@noaa.gov> Date: Mon Nov 2 20:46:33 2020 +0000 updates for checking if RTOFS files exist and only processing RTOFS files for needed fhr commit 190b78c8d34f60e84c80b47a97cb4184e4e11fd9 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Nov 2 18:41:32 2020 +0000 Set nth_fcst to 4 for C384 on Hera to handle less memory commit 713c51eabc40b80e02314b5955b0efab3b235344 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Nov 2 17:54:49 2020 +0000 Add FDATE calculation to setup scripts and change FDATE in to parsed value in config.base.emc.dyn commit 306ea5f15120d808760bd58b247b5861a8813670 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Nov 2 10:43:20 2020 -0600 Reduce C384 nth_fv3 to 1 in config.fv3 commit 9fa9ffe97d23ad69c33658875c9b0c3440c2c97f Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Nov 2 15:24:48 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.14 and update dumpjb version to 5.1.0 commit 24226384780c9c2438abec1864923f87371798d4 Merge: 70593343 a3b46385 Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Oct 30 19:48:13 2020 +0000 Merge branch 'release/gfsv16.0.0' of https://github.com/NOAA-EMC/global-workflow into release/gfsv16.0.0 commit 705933436f2f42d5fde17b8aa4a57918f2c66b6a Author: fanglin.yang <fanglin.yang@noaa.gov> Date: Fri Oct 30 19:46:51 2020 +0000 modified: jobs/JGFS_ATMOS_POSTSND and jobs/rocoto/postsnd.sh to remove redundant variables in the two scripts and make them work for both EMC and NCO parallels. commit c9e0566eb2e6179410583c14d48a971a79dc4c88 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Oct 29 20:50:46 2020 +0000 Revert epos change in setup_workflow.py commit a3b463859154c1127bb66764a65baa89929a0a5f Author: kate.friedman <kate.friedman@noaa.gov> Date: Wed Oct 28 18:18:51 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.13 commit ab0577de3c4bbbdc58219fd1c95a142cf93b5f4a Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Oct 28 13:52:34 2020 +0000 Issue #1 - update anal, eobs, and eupd resources for low res commit 97f1ae89baf37d8bd1940f179fecb6bdc1279fa2 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Oct 27 17:52:28 2020 +0000 Issue #1 - adjust epos groups for DOIAU/DOIAU_ENKF=NO commit cb6d74e0c7363f7e54d879a97f457f7d4a37d926 Author: Kate Friedman <kate.friedman@noaa.gov> Date: Mon Oct 26 15:56:58 2020 -0400 Rename Release_Notes.gfs.v16.0.0.txt to Release_Notes.gfs.v16.0.0.md commit c09678fb33d0ece36de1af223b5cdf8384d5b9c3 Author: kate.friedman <kate.friedman@noaa.gov> Date: Mon Oct 26 14:43:09 2020 +0000 Issue #1 - update WAFS tag to gfs_wafs.v6.0.12 for removal of in-cloud turbulence per AWC commit 59f08b31916d3585aa9a4832dc9de865e3a350cf Merge: cbe5ddff 1171a622 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Oct 22 19:47:42 2020 +0000 Merge remote-tracking branch 'upstream/port2orion' into feature/ccpp commit cbe5ddff8013a03a9391eead40796f9c30d7ca28 Author: Lin.Gan <lin.gan@noaa.gov> Date: Thu Oct 22 18:35:49 2020 +0000 Cycled warm start run using develop ufs-weather-model branch and feature/ccpp using merged branch on the 10/13 (4da0f) with feature/gfsv16b (31563). CPP_SUITE="FV3_GFS_v16beta" build_fv3 option: CCPP=Y 32BIT=Y SUITES=FV3_GFS_v15,FV3_GSD_v0,FV3_GSD_noah,FV3_GFS_v16beta wave is turned off for this test because it's for atmospheric physics and comparison. commit 1171a62238f0877fc8956df669f07fc9a418c145 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Thu Oct 22 14:01:31 2020 +0000 Issue #1 - increase wavepostbndpnt and wavepostpnt walltimes to give more time on Hera commit c3bab19722a8b301e9ac4d2367b7e3e5dc2d88e7 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Wed Oct 21 20:13:38 2020 +0000 Fix wrong DATE in new if-block in config.anal for cold start checking commit 636ded675b81b15e8b3af2a211edf44f17972cf0 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 20 19:23:16 2020 +0000 Issue #1 - add wtime_fcst_gfs time of 4hrs for C384 commit 4007f116adcde8372e590489d0faa0181babbc15 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 20 18:29:15 2020 +0000 Issue #1 - fix firstcyc queue bug in workflow_utils.py on WCOSS commit ebdb058fd138a7aa408d69c967747686ea5b77d9 Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 20 13:23:05 2020 -0500 Issue #1 - resource updates from low res testing - set io_layout to "1,1" for low res gfs in config.fcst - set npe_wav[_gfs] to 140 for all resolutions, same wave grid - increase nth_fv3 to 4 for C192 and C384 - set smaller walltime for gfsfcst when resolutions less than C768 commit 3f0ab6ff2dd4ca42a45e68972b1936d398b32097 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Oct 20 17:55:18 2020 +0000 Issue #1 - increase C768 npe_eobs to 200 for Hera nodes with less memory commit d5b69c49ddbd03982db79f09707a49d01ef0b443 Merge: 4ebdd230 794e6655 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Oct 20 16:56:27 2020 +0000 Merge remote-tracking branch 'origin/release/gfsv16.0.0' into port2orion * origin/release/gfsv16.0.0: Issue #1 - pull in corrected npe_eobs values in config.resources Issue #1 - update FV3 tag to GFS.v16.0.14 for Hera/Orion build support commit 4ebdd230c121a3c839829aa4ef855d80eb462549 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Tue Oct 20 16:53:46 2020 +0000 Add UPP netcdf module library load to HERA.env to resolve runtime netcdf version mismatch commit 794e6655cb227973e47b2373d0e4c97bf297479e Author: kate.friedman <kate.friedman@noaa.gov> Date: Tue Oct 20 16:45:58 2020 +0000 Issue #1 - pull in corrected npe_eobs values in config.resources commit 1d0cad425b1e163377bba8ace6622bbbb2d81de0 Author: Kate.Friedman <Kate.Friedman@noaa.gov> Date: Mon Oct 19 19:24:55 2020 +0000 …

dustinswales added 7 commits October 27, 2020 23:41

Initial commit

dc843a5

Use common cloud-overlap routines in RRTMG

e23d4a8

Remove distinct lw/sw cloud-overlap options in RRTMG.

a8cc769

Remove distinct lw/sw cloud-overlap options in RRTMGP.

b145f63

New cloud-overlap assumptions in RRTMGP. Replaced magic numbers with …

ae2472f

…parameters.

Removed instanced of physparam in RRTMGP scheme. Information passed d…

01ad186

…irectly to routines.

Assumulated changes. Cleanup GP setup module, remove GP dependecies o…

573d922

…n physparam.f, some housekeeping.

dustinswales requested review from climbfuji, grantfirl, JulieSchramm and llpcarson as code owners November 2, 2020 22:00

This was referenced Nov 2, 2020

Infrastructure improvements for radiation NOAA-EMC/fv3atm#193

Merged

Changes to regression test files for recent changes to RRTMG and RRTMGP. ufs-community/ufs-weather-model#262

Merged

dustinswales added 2 commits November 5, 2020 23:48

Merge branch 'master' of https://github.com/NCAR/ccpp-physics into ma…

7e88b16

…ster-ncar-f3e6761

Synced with NCAR master

0d22b36

climbfuji changed the title ~~Improvements to Radiaiton code.~~ Improvements to radiation code Nov 6, 2020

climbfuji reviewed Nov 6, 2020

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climbfuji requested review from SMoorthi-emc and junwang-noaa November 6, 2020 17:35

tanyasmirnova approved these changes Nov 6, 2020

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SMoorthi-emc reviewed Nov 6, 2020

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SMoorthi-emc approved these changes Nov 6, 2020

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JessicaMeixner-NOAA mentioned this pull request Nov 10, 2020

update feature/coupled-crow for consistency w/model regtests NOAA-EMC/global-workflow#172

Closed

dustinswales added 2 commits November 10, 2020 17:09

Removed redundant importing of kind_phys

7cef35e

add units to index_for_diagnostic_printout metadata

53619d8

climbfuji mentioned this pull request Nov 10, 2020

add units to index_for_diagnostic_printout metadata to avoid ccpp_prebuild.py error #517

Closed

Bugfix in GP sampling routines.

0ecf50b

climbfuji approved these changes Nov 12, 2020

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junwang-noaa approved these changes Nov 13, 2020

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climbfuji merged commit 8ef88ca into NCAR:master Nov 13, 2020

yangfanglin mentioned this pull request Nov 16, 2020

make global workflow work for forecasts with both IPD and CCPP physics options NOAA-EMC/global-workflow#187

Closed

dustinswales deleted the master-ncar-f3e6761 branch November 16, 2020 17:49

JessicaMeixner-NOAA added a commit to JessicaMeixner-NOAA/global-workflow that referenced this pull request Dec 8, 2020

updating iovsr after NCAR/ccpp-physics#514 namelist options iovrsw an…

cef3392

…d iovrlw will be replaced by a single iovr option

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Improvements to radiation code #514

Improvements to radiation code #514

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edited by climbfuji

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Improvements to radiation code #514

Improvements to radiation code #514

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