SB Delete features

--delete_features, -df

Description

Delete all sequence features containing a regular expression pattern match.

Positional argument

A simple string or regular expression. To avoid issues with special characters, make a habit of adding 'single quotes' around the search term.

Example

input file: Panxα3.gb

LOCUS       Mle-Panxα3              1236 bp    DNA              UNA 02-JAN-2015
DEFINITION  cDNA - ML036514a.
ACCESSION   Mle-Panxα3
VERSION     Mle-Panxα3
KEYWORDS    .
SOURCE
  ORGANISM  . . .
            .
FEATURES             Location/Qualifiers
     CDS             order(1..151,152..334,335..456,457..549,550..726,727..845,
                     846..1036,1037..1236)
     TMD1            85..147
     TMD2            394..456
     TMD3            652..714
     TMD4            904..996
ORIGIN
        1 atgttgttgc tcggctcact cggaacgatc aagaacttga gcatcttcaa agacctgtcc
       61 ttggacgact ggctggatca gatgaacagg accttcatgt ttctactgct ctgtttcatg
      121 ggaacaattg tcgccgttag tcagtacact ggtaaaaaca tatcttgcga tggctttacg
      181 aagttcggag aagatttctc gcaagactac tgctggaccc agggcttgta cacgattaaa
      241 gaagcgtacg acttgcccga gtcccagatc ccgtatcctg ggattatccc tgaaaacgtg
      301 ccggcatgta gagagcacgc tctgaaaaac ggaggaaaga tagtctgccc tcctgaagat
      361 caagtgaagc ccctgacccg ggctcgacat ctctggtacc agtggatacc tttctacttc
      421 tgggtgatag ctccagtctt ctatctccct tacatgtttg tgaaaaggat gggacttgac
      481 agaatgaaac ctctgttgaa gatcatgagc gactactacc actgcactac agagacacct
      541 tcagaggaga taatagtgaa gtgtgcagac tgggtataca acagtatagt agacaggctg
      601 tcagagggca gcagctggac aagctggaga aacagacacg gtcttggtct ggctgtcttg
      661 gtcagcaagt tcatgtatct cggaggtagt gtcctcgtca tgatgatgac cactctcatg
      721 ttccaggttg gtgatttcaa gacgtacggt atagagtggt tgaggcagtt ccctaatcca
      781 gaaaactatt cgacctcagt taaacacaaa ctattcccca aaatggtagc ctgtgagata
      841 aaacgatggg gcactaccgg gctagaagag gagaatggaa tgtgtgtcct tgccccgaat
      901 gtcatctacc agtacatttt tctaatcatg tggttcgctc tagccatcac catatgcacc
      961 aacttcggca acatattttt ctatctcttc aagctgacag ccactagata cacttacaac
     1021 aaattggtgg ccacaggaca tttctcccac aagcacccag gttggaagtt catgtactac
     1081 cggattggga cgtcaggtcg cgttctcctg aacattgtcg ctcaaaacac gaaccctatc
     1141 attttcgggg ctatcatgga aaaactgaca ccttcagtca ttaagcattt gaggataggt
     1201 cacgtgcccg gggagtattt aacggaccca gcatag
//

usage example 1

$: sb Panxα3.gb -df 'TMD[1-3]'

output

LOCUS       Mle-Panxα3              1236 bp    DNA              UNA 02-JAN-2015
DEFINITION  cDNA - ML036514a.
ACCESSION   Mle-Panxα3
VERSION     Mle-Panxα3
KEYWORDS    .
SOURCE
  ORGANISM  . . . .
            .
FEATURES             Location/Qualifiers
     CDS             order(1..151,152..334,335..456,457..549,550..726,727..845,
                     846..1036,1037..1236)
     TMD4            904..996
ORIGIN
        1 atgttgttgc tcggctcact cggaacgatc aagaacttga gcatcttcaa agacctgtcc
       61 ttggacgact ggctggatca gatgaacagg accttcatgt ttctactgct ctgtttcatg
      121 ggaacaattg tcgccgttag tcagtacact ggtaaaaaca tatcttgcga tggctttacg
      181 aagttcggag aagatttctc gcaagactac tgctggaccc agggcttgta cacgattaaa
      241 gaagcgtacg acttgcccga gtcccagatc ccgtatcctg ggattatccc tgaaaacgtg
      301 ccggcatgta gagagcacgc tctgaaaaac ggaggaaaga tagtctgccc tcctgaagat
      361 caagtgaagc ccctgacccg ggctcgacat ctctggtacc agtggatacc tttctacttc
      421 tgggtgatag ctccagtctt ctatctccct tacatgtttg tgaaaaggat gggacttgac
      481 agaatgaaac ctctgttgaa gatcatgagc gactactacc actgcactac agagacacct
      541 tcagaggaga taatagtgaa gtgtgcagac tgggtataca acagtatagt agacaggctg
      601 tcagagggca gcagctggac aagctggaga aacagacacg gtcttggtct ggctgtcttg
      661 gtcagcaagt tcatgtatct cggaggtagt gtcctcgtca tgatgatgac cactctcatg
      721 ttccaggttg gtgatttcaa gacgtacggt atagagtggt tgaggcagtt ccctaatcca
      781 gaaaactatt cgacctcagt taaacacaaa ctattcccca aaatggtagc ctgtgagata
      841 aaacgatggg gcactaccgg gctagaagag gagaatggaa tgtgtgtcct tgccccgaat
      901 gtcatctacc agtacatttt tctaatcatg tggttcgctc tagccatcac catatgcacc
      961 aacttcggca acatattttt ctatctcttc aagctgacag ccactagata cacttacaac
     1021 aaattggtgg ccacaggaca tttctcccac aagcacccag gttggaagtt catgtactac
     1081 cggattggga cgtcaggtcg cgttctcctg aacattgtcg ctcaaaacac gaaccctatc
     1141 attttcgggg ctatcatgga aaaactgaca ccttcagtca ttaagcattt gaggataggt
     1201 cacgtgcccg gggagtattt aacggaccca gcatag
//