Develop #1224
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Develop #1224
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WardDeb
commented
Jun 14, 2023
WardDeb
commented
- CItest planemo in a separate test
- CItest pypi push only on release tag
- alignmentSieve: increase default chunklength in alignmentSieve (alignmentSieve returns a truncated bam #1180 )
- alignmentSieve: output compressed bamfile (alignmentsieve output bamfile #1147 )
- suppress lack of index warnings from pysam
- fixedStep in bedGraph output to avoid merging bins with equal values.
multiBigwigSummary: fix label options
Updated dependencies
Bioconda requires conda-forge
* Fixes #1159 * Revert "dendogram of plotCorrelation now matches each cell correctly" * add bigwigAverage * linting * remove forgotten prints * make bigwigAverage executable * fix galaxy tests Co-authored-by: A.s <62971995+adRn-s@users.noreply.github.com> Co-authored-by: LeilyR <25766687+LeilyR@users.noreply.github.com>
* upload artifact * allow 1 or 2 lines diff for bowtie2 program * change github action to get artifacts * fix plotPCA * try to fix old samtools installed * add forgotten channels
- chunk size arg for alignmentsieve in an attempt to fix truncated bam file output - compressed bam output
Add --fixedStep option for bigwigCompare
adRn-s
approved these changes
Jun 14, 2023
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