Update develop-ref after #2728, #2723, #2736 (#2747)

Co-authored-by: jprestop <jpresto@ucar.edu>
Co-authored-by: Seth Linden <linden@seneca.rap.ucar.edu>
Co-authored-by: John Halley Gotway <johnhg@ucar.edu>
Co-authored-by: Daniel Adriaansen <dadriaan@ucar.edu>
Co-authored-by: John and Cindy <halleygotway@Halleys-Mac-mini.local>
Co-authored-by: rgbullock <bullock@ucar.edu>
Co-authored-by: Randy Bullock <bullock@seneca.rap.ucar.edu>
Co-authored-by: Dave Albo <dave@seneca.rap.ucar.edu>
Co-authored-by: Howard Soh <hsoh@seneca.rap.ucar.edu>
Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
Co-authored-by: hsoh-u <hsoh@ucar.edu>
Co-authored-by: MET Tools Test Account <met_test@seneca.rap.ucar.edu>
Co-authored-by: Seth Linden <linden@ucar.edu>
Co-authored-by: lisagoodrich <33230218+lisagoodrich@users.noreply.github.com>
Co-authored-by: davidalbo <dave@ucar.edu>
Co-authored-by: Lisa Goodrich <lisag@ucar.edu>
Co-authored-by: metplus-bot <97135045+metplus-bot@users.noreply.github.com>
Co-authored-by: j-opatz <59586397+j-opatz@users.noreply.github.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Jonathan Vigh <jvigh@ucar.edu>
Co-authored-by: Tracy Hertneky <39317287+hertneky@users.noreply.github.com>
Co-authored-by: David Albo <dave@ucar.edu>
Co-authored-by: Dan Adriaansen <dadriaan@ucar.edu>
Co-authored-by: Julie Prestopnik <jpresto@ucar.edu>
Co-authored-by: root <root@83062d57c5dd>
fix 2518 dtypes appf docs (#2519)
fix 2531 compilation errors (#2533)
fix #2531 compilation_errors_configure (#2535)
fix #2514 develop clang (#2563)
fix #2575 develop python_convert (#2576)
Fix Python environment issue (#2407)
fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406)
fix #2380 develop override (#2382)
fix #2408 develop empty config (#2410)
fix #2390 develop compile zlib (#2404)
fix #2412 develop climo (#2422)
fix #2437 develop convert (#2439)
fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup.
fix #2452 develop airnow (#2454)
fix #2449 develop pdf (#2464)
fix #2402 develop sonarqube (#2468)
fix #2426 develop buoy (#2475)
fix 2596 main v11.1 rpath compilation (#2614)
fix #2514 main_v11.1 clang (#2628)
fix #2644 develop percentile (#2647)
fix #2730 develop SI_BCU (#2732)

.github/jobs/set_job_controls.sh

@@ -6,7 +6,7 @@ run_unit_tests=false
 run_diff=false
 run_update_truth=false
 met_base_repo=met-base
-met_base_tag=v3.0
+met_base_tag=v3.1
 input_data_version=develop
 truth_data_version=develop
 

.github/workflows/build_docker_and_trigger_metplus.yml

@@ -29,7 +29,7 @@ jobs:
         env:
           SOURCE_BRANCH: ${{ steps.get_branch_name.outputs.branch_name }}-lite
           MET_BASE_REPO: met-base
-          MET_BASE_TAG: v3.0
+          MET_BASE_TAG: v3.1
 
       - name: Push Docker Image
         run: .github/jobs/push_docker_image.sh

.github/workflows/testing.yml

@@ -294,6 +294,7 @@ jobs:
           - 'grid_stat stat_analysis_gs'
           - 'wavelet_stat stat_analysis_ws'
           - 'ensemble_stat stat_analysis_es'
+          - 'ugrid'
       fail-fast: false
     steps:
       - uses: actions/checkout@v3

INSTALL

@@ -179,6 +179,10 @@ sub-directory, or the MET Online Tutorial:
       Enable compilation of lidar2nc
       Requires $MET_HDF
 
+  --enable-ugrid
+      Enable compilation of unstructured grid
+      Requires $MET_ATLAS and $MET_ECKIT
+
   To configure MET to install all of the available tools in the "bin"
   subdirectory of your current directory, you would use the following command:
 

Make-include

@@ -15,6 +15,7 @@ MET_CPPFLAGS = -I${top_builddir}/src/basic/vx_cal \
 	     -I${top_builddir}/src/libcode/vx_data2d_nc_met \
 	     -I${top_builddir}/src/libcode/vx_data2d_nc_pinterp \
 	     -I${top_builddir}/src/libcode/vx_data2d_python \
+	     -I${top_builddir}/src/libcode/vx_data2d_ugrid \
 	     -I${top_builddir}/src/libcode/vx_python3_utils \
 	     -I${top_builddir}/src/libcode/vx_geodesy \
 	     -I${top_builddir}/src/libcode/vx_gis \
@@ -61,6 +62,7 @@ MET_LDFLAGS = -L${top_builddir}/src/basic/vx_cal \
 	     -L${top_builddir}/src/libcode/vx_data2d_nc_met \
 	     -L${top_builddir}/src/libcode/vx_data2d_nc_pinterp \
 	     -L${top_builddir}/src/libcode/vx_data2d_python \
+	     -L${top_builddir}/src/libcode/vx_data2d_ugrid \
 	     -L${top_builddir}/src/libcode/vx_python3_utils \
 	     -L${top_builddir}/src/libcode/vx_geodesy \
 	     -L${top_builddir}/src/libcode/vx_gis \

Makefile.in

@@ -1,7 +1,7 @@
-# Makefile.in generated by automake 1.16.1 from Makefile.am.
+# Makefile.in generated by automake 1.16.5 from Makefile.am.
 # @configure_input@
 
-# Copyright (C) 1994-2018 Free Software Foundation, Inc.
+# Copyright (C) 1994-2021 Free Software Foundation, Inc.
 
 # This Makefile.in is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
@@ -136,8 +136,8 @@ am__recursive_targets = \
   $(am__extra_recursive_targets)
 AM_RECURSIVE_TARGETS = $(am__recursive_targets:-recursive=) TAGS CTAGS \
 	cscope distdir distdir-am dist dist-all distcheck
-am__tagged_files = $(HEADERS) $(SOURCES) $(TAGS_FILES) \
-	$(LISP)config.h.in
+am__tagged_files = $(HEADERS) $(SOURCES) $(TAGS_FILES) $(LISP) \
+	config.h.in
 # Read a list of newline-separated strings from the standard input,
 # and print each of them once, without duplicates.  Input order is
 # *not* preserved.
@@ -154,14 +154,11 @@ am__define_uniq_tagged_files = \
   unique=`for i in $$list; do \
     if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
   done | $(am__uniquify_input)`
-ETAGS = etags
-CTAGS = ctags
-CSCOPE = cscope
 DIST_SUBDIRS = data src scripts/Rscripts scripts/python \
 	internal/test_util
 am__DIST_COMMON = $(srcdir)/Makefile.in $(srcdir)/config.h.in INSTALL \
-	compile config.guess config.sub depcomp install-sh missing \
-	ylwrap
+	README.md compile config.guess config.sub depcomp install-sh \
+	missing ylwrap
 DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
 distdir = $(PACKAGE)-$(VERSION)
 top_distdir = $(distdir)
@@ -200,6 +197,8 @@ am__relativize = \
 DIST_ARCHIVES = $(distdir).tar.gz
 GZIP_ENV = --best
 DIST_TARGETS = dist-gzip
+# Exists only to be overridden by the user if desired.
+AM_DISTCHECK_DVI_TARGET = dvi
 distuninstallcheck_listfiles = find . -type f -print
 am__distuninstallcheck_listfiles = $(distuninstallcheck_listfiles) \
   | sed 's|^\./|$(prefix)/|' | grep -v '$(infodir)/dir$$'
@@ -215,8 +214,9 @@ BUFRLIB_NAME = @BUFRLIB_NAME@
 CC = @CC@
 CCDEPMODE = @CCDEPMODE@
 CFLAGS = @CFLAGS@
-CPP = @CPP@
 CPPFLAGS = @CPPFLAGS@
+CSCOPE = @CSCOPE@
+CTAGS = @CTAGS@
 CXX = @CXX@
 CXXDEPMODE = @CXXDEPMODE@
 CXXFLAGS = @CXXFLAGS@
@@ -226,15 +226,15 @@ DEPDIR = @DEPDIR@
 ECHO_C = @ECHO_C@
 ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
-EGREP = @EGREP@
+ETAGS = @ETAGS@
 EXEEXT = @EXEEXT@
 F77 = @F77@
 FC_LIBS = @FC_LIBS@
 FFLAGS = @FFLAGS@
 FLIBS = @FLIBS@
-GREP = @GREP@
 GRIB2CLIB_NAME = @GRIB2CLIB_NAME@
-GRIB2_LIBS = @GRIB2_LIBS@
+GRIB2_DEP_LIBS = @GRIB2_DEP_LIBS@
+GRIB2_MET_LIBS = @GRIB2_MET_LIBS@
 INSTALL = @INSTALL@
 INSTALL_DATA = @INSTALL_DATA@
 INSTALL_PROGRAM = @INSTALL_PROGRAM@
@@ -248,11 +248,17 @@ LIBOBJS = @LIBOBJS@
 LIBS = @LIBS@
 LTLIBOBJS = @LTLIBOBJS@
 MAKEINFO = @MAKEINFO@
+MET_ATLAS = @MET_ATLAS@
+MET_ATLASINC = @MET_ATLASINC@
+MET_ATLASLIB = @MET_ATLASLIB@
 MET_BUFR = @MET_BUFR@
 MET_BUFRLIB = @MET_BUFRLIB@
 MET_CAIRO = @MET_CAIRO@
 MET_CAIROINC = @MET_CAIROINC@
 MET_CAIROLIB = @MET_CAIROLIB@
+MET_ECKIT = @MET_ECKIT@
+MET_ECKITINC = @MET_ECKITINC@
+MET_ECKITLIB = @MET_ECKITLIB@
 MET_FREETYPE = @MET_FREETYPE@
 MET_FREETYPEINC = @MET_FREETYPEINC@
 MET_FREETYPELIB = @MET_FREETYPELIB@
@@ -291,11 +297,14 @@ PACKAGE_TARNAME = @PACKAGE_TARNAME@
 PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
-PYTHON_LIBS = @PYTHON_LIBS@
+PYTHON_DEP_LIBS = @PYTHON_DEP_LIBS@
+PYTHON_MET_LIBS = @PYTHON_MET_LIBS@
 RANLIB = @RANLIB@
 SET_MAKE = @SET_MAKE@
 SHELL = @SHELL@
 STRIP = @STRIP@
+UGRID_DEP_LIBS = @UGRID_DEP_LIBS@
+UGRID_MET_LIBS = @UGRID_MET_LIBS@
 VERSION = @VERSION@
 YACC = @YACC@
 YFLAGS = @YFLAGS@
@@ -527,7 +536,6 @@ cscopelist-am: $(am__tagged_files)
 distclean-tags:
 	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
 	-rm -f cscope.out cscope.in.out cscope.po.out cscope.files
-
 distdir: $(BUILT_SOURCES)
 	$(MAKE) $(AM_MAKEFLAGS) distdir-am
 
@@ -614,6 +622,10 @@ dist-xz: distdir
 	tardir=$(distdir) && $(am__tar) | XZ_OPT=$${XZ_OPT--e} xz -c >$(distdir).tar.xz
 	$(am__post_remove_distdir)
 
+dist-zstd: distdir
+	tardir=$(distdir) && $(am__tar) | zstd -c $${ZSTD_CLEVEL-$${ZSTD_OPT--19}} >$(distdir).tar.zst
+	$(am__post_remove_distdir)
+
 dist-tarZ: distdir
 	@echo WARNING: "Support for distribution archives compressed with" \
 		       "legacy program 'compress' is deprecated." >&2
@@ -656,6 +668,8 @@ distcheck: dist
 	  eval GZIP= gzip $(GZIP_ENV) -dc $(distdir).shar.gz | unshar ;;\
 	*.zip*) \
 	  unzip $(distdir).zip ;;\
+	*.tar.zst*) \
+	  zstd -dc $(distdir).tar.zst | $(am__untar) ;;\
 	esac
 	chmod -R a-w $(distdir)
 	chmod u+w $(distdir)
@@ -671,7 +685,7 @@ distcheck: dist
 	    $(DISTCHECK_CONFIGURE_FLAGS) \
 	    --srcdir=../.. --prefix="$$dc_install_base" \
 	  && $(MAKE) $(AM_MAKEFLAGS) \
-	  && $(MAKE) $(AM_MAKEFLAGS) dvi \
+	  && $(MAKE) $(AM_MAKEFLAGS) $(AM_DISTCHECK_DVI_TARGET) \
 	  && $(MAKE) $(AM_MAKEFLAGS) check \
 	  && $(MAKE) $(AM_MAKEFLAGS) install \
 	  && $(MAKE) $(AM_MAKEFLAGS) installcheck \
@@ -833,17 +847,17 @@ uninstall-am:
 	am--refresh check check-am clean clean-cscope clean-generic \
 	cscope cscopelist-am ctags ctags-am dist dist-all dist-bzip2 \
 	dist-gzip dist-hook dist-lzip dist-shar dist-tarZ dist-xz \
-	dist-zip distcheck distclean distclean-generic distclean-hdr \
-	distclean-tags distcleancheck distdir distuninstallcheck dvi \
-	dvi-am html html-am info info-am install install-am \
-	install-data install-data-am install-dvi install-dvi-am \
-	install-exec install-exec-am install-html install-html-am \
-	install-info install-info-am install-man install-pdf \
-	install-pdf-am install-ps install-ps-am install-strip \
-	installcheck installcheck-am installdirs installdirs-am \
-	maintainer-clean maintainer-clean-generic mostlyclean \
-	mostlyclean-generic pdf pdf-am ps ps-am tags tags-am uninstall \
-	uninstall-am
+	dist-zip dist-zstd distcheck distclean distclean-generic \
+	distclean-hdr distclean-tags distcleancheck distdir \
+	distuninstallcheck dvi dvi-am html html-am info info-am \
+	install install-am install-data install-data-am install-dvi \
+	install-dvi-am install-exec install-exec-am install-html \
+	install-html-am install-info install-info-am install-man \
+	install-pdf install-pdf-am install-ps install-ps-am \
+	install-strip installcheck installcheck-am installdirs \
+	installdirs-am maintainer-clean maintainer-clean-generic \
+	mostlyclean mostlyclean-generic pdf pdf-am ps ps-am tags \
+	tags-am uninstall uninstall-am
 
 .PRECIOUS: Makefile
 

compile

@@ -3,7 +3,7 @@
 
 scriptversion=2018-03-07.03; # UTC
 
-# Copyright (C) 1999-2018 Free Software Foundation, Inc.
+# Copyright (C) 1999-2021 Free Software Foundation, Inc.
 # Written by Tom Tromey <tromey@cygnus.com>.
 #
 # This program is free software; you can redistribute it and/or modify
@@ -53,7 +53,7 @@ func_file_conv ()
 	  MINGW*)
 	    file_conv=mingw
 	    ;;
-	  CYGWIN*)
+	  CYGWIN* | MSYS*)
 	    file_conv=cygwin
 	    ;;
 	  *)
@@ -67,7 +67,7 @@ func_file_conv ()
 	mingw/*)
 	  file=`cmd //C echo "$file " | sed -e 's/"\(.*\) " *$/\1/'`
 	  ;;
-	cygwin/*)
+	cygwin/* | msys/*)
 	  file=`cygpath -m "$file" || echo "$file"`
 	  ;;
 	wine/*)