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Bugfix: Fix logic for Python embedding with data censoring and/or conversion #2575

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JohnHalleyGotway opened this issue Jun 14, 2023 · 0 comments · Fixed by #2576 or #2577
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MET: Python Embedding priority: blocker Blocker requestor: METplus Team METplus Development Team type: bug Fix something that is not working

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@JohnHalleyGotway
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Describe the Problem

This issue was raised via discussion dtcenter/METplus#2214 and an explanation of the problem/solution can be found in this comment.

The fix is to modify the logic of src/libcode/vx_data2d_python/data2d_python.cc to apply data censoring and conversion operations on a copy of the DataPlane object read from the python script, rather than modifying the DataPlane object stored in the class. Otherwise, those operations will be applied each time MetPythonDataFile::data_plane() is called!

Expected Behavior

@CPKalb found that running Grid-Stat with Python embedding and specifying a convert(x) function does not work as expected with MET version 11.0.1. The values written the NetCDF matched pairs file from Grid-Stat indicate that the conversion operation was applied 2 times.

To Reproduce

Describe the steps to reproduce the behavior:
Replicated the issue on seneca in /d1/projects/METplus/discussions/2214/run.sh

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@JohnHalleyGotway JohnHalleyGotway added type: bug Fix something that is not working priority: blocker Blocker requestor: METplus Team METplus Development Team MET: Python Embedding labels Jun 14, 2023
@JohnHalleyGotway JohnHalleyGotway added this to the MET 11.0.3 (bugfix) milestone Jun 14, 2023
@JohnHalleyGotway JohnHalleyGotway self-assigned this Jun 14, 2023
@JohnHalleyGotway JohnHalleyGotway moved this from 📋 Backlog to 🏗 In progress in MET-11.1.0 Development Jun 14, 2023
@JohnHalleyGotway JohnHalleyGotway moved this from 📋 Backlog to 🏗 In progress in Coordinated METplus-5.0 Support Jun 14, 2023
JohnHalleyGotway added a commit that referenced this issue Jun 14, 2023
…d in the MetPythonDataFile class rather than the original one. Otherwise, retrieving the data multiple times will cause the same conversion operation to be performed multiple times.
@JohnHalleyGotway JohnHalleyGotway linked a pull request Jun 14, 2023 that will close this issue
15 tasks
@JohnHalleyGotway JohnHalleyGotway linked a pull request Jun 14, 2023 that will close this issue
9 tasks
@JohnHalleyGotway JohnHalleyGotway moved this from 🏗 In progress to 👀 In review in MET-11.1.0 Development Jun 15, 2023
@github-project-automation github-project-automation bot moved this from 🏗 In progress to ✅ Done in Coordinated METplus-5.0 Support Jun 15, 2023
@github-project-automation github-project-automation bot moved this from 👀 In review to ✅ Done in MET-11.1.0 Development Jun 15, 2023
JohnHalleyGotway pushed a commit that referenced this issue Jun 19, 2023
Co-authored-by: John Halley Gotway <johnhg@ucar.edu>
Co-authored-by: jprestop <jpresto@ucar.edu>
Co-authored-by: Seth Linden <linden@seneca.rap.ucar.edu>
Co-authored-by: Daniel Adriaansen <dadriaan@ucar.edu>
Co-authored-by: John and Cindy <halleygotway@Halleys-Mac-mini.local>
Co-authored-by: rgbullock <bullock@ucar.edu>
Co-authored-by: Randy Bullock <bullock@seneca.rap.ucar.edu>
Co-authored-by: Dave Albo <dave@seneca.rap.ucar.edu>
Co-authored-by: davidalbo <dave@ucar.edu>
Co-authored-by: Julie Prestopnik <jpresto@ucar.edu>
Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
Co-authored-by: Lisa Goodrich <lisag@ucar.edu>
Co-authored-by: Howard Soh <hsoh@seneca.rap.ucar.edu>
Co-authored-by: hsoh-u <hsoh@ucar.edu>
Co-authored-by: lisagoodrich <33230218+lisagoodrich@users.noreply.github.com>
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fix #2449 develop pdf (#2464)
fix #2402 develop sonarqube (#2468)
fix #2426 develop buoy (#2475)
fix 2518 dtypes appf docs (#2519)
fix 2531 compilation errors (#2533)
fix #2531 compilation_errors_configure (#2535)
fix #2514 develop clang (#2563)
fix #2575 develop python_convert (#2576)
JohnHalleyGotway pushed a commit that referenced this issue Aug 1, 2023
Co-authored-by: John Halley Gotway <johnhg@ucar.edu>
Co-authored-by: jprestop <jpresto@ucar.edu>
Co-authored-by: Seth Linden <linden@seneca.rap.ucar.edu>
Co-authored-by: Daniel Adriaansen <dadriaan@ucar.edu>
Co-authored-by: John and Cindy <halleygotway@Halleys-Mac-mini.local>
Co-authored-by: rgbullock <bullock@ucar.edu>
Co-authored-by: Randy Bullock <bullock@seneca.rap.ucar.edu>
Co-authored-by: Dave Albo <dave@seneca.rap.ucar.edu>
Co-authored-by: Howard Soh <hsoh@seneca.rap.ucar.edu>
Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
Co-authored-by: hsoh-u <hsoh@ucar.edu>
Co-authored-by: MET Tools Test Account <met_test@seneca.rap.ucar.edu>
Co-authored-by: Seth Linden <linden@ucar.edu>
Co-authored-by: lisagoodrich <33230218+lisagoodrich@users.noreply.github.com>
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Co-authored-by: David Albo <dave@ucar.edu>
Co-authored-by: Dan Adriaansen <dadriaan@ucar.edu>
Co-authored-by: Julie Prestopnik <jpresto@ucar.edu>
fix #2426 develop buoy (#2475)
fix 2518 dtypes appf docs (#2519)
fix 2531 compilation errors (#2533)
fix #2531 compilation_errors_configure (#2535)
fix #2514 develop clang (#2563)
fix #2575 develop python_convert (#2576)
Fix Python environment issue (#2407)
fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406)
fix #2380 develop override (#2382)
fix #2408 develop empty config (#2410)
fix #2390 develop compile zlib (#2404)
fix #2412 develop climo (#2422)
fix #2437 develop convert (#2439)
fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup.
fix #2452 develop airnow (#2454)
fix #2449 develop pdf (#2464)
fix #2402 develop sonarqube (#2468)
fix 2596 main v11.1 rpath compilation (#2614)
fix #2514 main_v11.1 clang (#2628)
JohnHalleyGotway pushed a commit that referenced this issue Aug 22, 2023
Co-authored-by: jprestop <jpresto@ucar.edu>
Co-authored-by: Seth Linden <linden@seneca.rap.ucar.edu>
Co-authored-by: John Halley Gotway <johnhg@ucar.edu>
Co-authored-by: Daniel Adriaansen <dadriaan@ucar.edu>
Co-authored-by: John and Cindy <halleygotway@Halleys-Mac-mini.local>
Co-authored-by: rgbullock <bullock@ucar.edu>
Co-authored-by: Randy Bullock <bullock@seneca.rap.ucar.edu>
Co-authored-by: Dave Albo <dave@seneca.rap.ucar.edu>
Co-authored-by: Howard Soh <hsoh@seneca.rap.ucar.edu>
Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
Co-authored-by: hsoh-u <hsoh@ucar.edu>
Co-authored-by: MET Tools Test Account <met_test@seneca.rap.ucar.edu>
Co-authored-by: Seth Linden <linden@ucar.edu>
Co-authored-by: lisagoodrich <33230218+lisagoodrich@users.noreply.github.com>
Co-authored-by: davidalbo <dave@ucar.edu>
Co-authored-by: Lisa Goodrich <lisag@ucar.edu>
Co-authored-by: metplus-bot <97135045+metplus-bot@users.noreply.github.com>
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Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Jonathan Vigh <jvigh@ucar.edu>
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Co-authored-by: David Albo <dave@ucar.edu>
Co-authored-by: Dan Adriaansen <dadriaan@ucar.edu>
fix 2518 dtypes appf docs (#2519)
fix 2531 compilation errors (#2533)
fix #2531 compilation_errors_configure (#2535)
fix #2514 develop clang (#2563)
fix #2575 develop python_convert (#2576)
Fix Python environment issue (#2407)
fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406)
fix #2380 develop override (#2382)
fix #2408 develop empty config (#2410)
fix #2390 develop compile zlib (#2404)
fix #2412 develop climo (#2422)
fix #2437 develop convert (#2439)
fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup.
fix #2452 develop airnow (#2454)
fix #2449 develop pdf (#2464)
fix #2402 develop sonarqube (#2468)
fix #2426 develop buoy (#2475)
fix 2596 main v11.1 rpath compilation (#2614)
fix #2514 main_v11.1 clang (#2628)
fix #2644 develop percentile (#2647)
JohnHalleyGotway pushed a commit that referenced this issue Sep 6, 2023
Co-authored-by: jprestop <jpresto@ucar.edu>
Co-authored-by: Seth Linden <linden@seneca.rap.ucar.edu>
Co-authored-by: John Halley Gotway <johnhg@ucar.edu>
Co-authored-by: Daniel Adriaansen <dadriaan@ucar.edu>
Co-authored-by: John and Cindy <halleygotway@Halleys-Mac-mini.local>
Co-authored-by: rgbullock <bullock@ucar.edu>
Co-authored-by: Randy Bullock <bullock@seneca.rap.ucar.edu>
Co-authored-by: Dave Albo <dave@seneca.rap.ucar.edu>
Co-authored-by: Howard Soh <hsoh@seneca.rap.ucar.edu>
Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
Co-authored-by: hsoh-u <hsoh@ucar.edu>
Co-authored-by: MET Tools Test Account <met_test@seneca.rap.ucar.edu>
Co-authored-by: Seth Linden <linden@ucar.edu>
Co-authored-by: lisagoodrich <33230218+lisagoodrich@users.noreply.github.com>
Co-authored-by: davidalbo <dave@ucar.edu>
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Co-authored-by: David Albo <dave@ucar.edu>
Co-authored-by: Dan Adriaansen <dadriaan@ucar.edu>
fix 2518 dtypes appf docs (#2519)
fix 2531 compilation errors (#2533)
fix #2531 compilation_errors_configure (#2535)
fix #2514 develop clang (#2563)
fix #2575 develop python_convert (#2576)
Fix Python environment issue (#2407)
fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406)
fix #2380 develop override (#2382)
fix #2408 develop empty config (#2410)
fix #2390 develop compile zlib (#2404)
fix #2412 develop climo (#2422)
fix #2437 develop convert (#2439)
fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup.
fix #2452 develop airnow (#2454)
fix #2449 develop pdf (#2464)
fix #2402 develop sonarqube (#2468)
fix #2426 develop buoy (#2475)
fix 2596 main v11.1 rpath compilation (#2614)
fix #2514 main_v11.1 clang (#2628)
fix #2644 develop percentile (#2647)
JohnHalleyGotway pushed a commit that referenced this issue Sep 11, 2023
Co-authored-by: MET Tools Test Account <met_test@seneca.rap.ucar.edu>
Co-authored-by: Howard Soh <hsoh@seneca.rap.ucar.edu>
Co-authored-by: John Halley Gotway <johnhg@ucar.edu>
Co-authored-by: jprestop <jpresto@ucar.edu>
Co-authored-by: hsoh-u <hsoh@ucar.edu>
Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
Co-authored-by: lisagoodrich <33230218+lisagoodrich@users.noreply.github.com>
Co-authored-by: Stephen Herbener <32968781+srherbener@users.noreply.github.com>
fix #2389 main_v11.0 flowchart (#2391)
fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2405)
fix #2380 main_v11.0 override (#2381)
fix #2408 main_v11.0 empty config (#2409)
fix #2390 main_v11.0 fix compiling hdf5 with zlib and handle NetCDF-C zip (#2403)
fix #2415 main_v11.0 modulefiles (#2416)
fix #2412 main_v11.0 climo (#2420)
fix #2426 main_v11.0 buoy (#2432)
fix #2437 main_v11.0 convert (#2438)
fix for main_v11.0, for #2437, forgot one reference to the search_parent for a dictionary lookup.
fix 2428 python from env main v11.0 (#2443)
fix 2428 python csv input (#2450)
fix #2452 main_v11.0 airnow (#2453)
fix #2402 main_v11.0 sonarqube (First PR) (#2447)
fix #2449 main_v11.0 pdf (#2465)
fix 2428 python csv input (#2467)
fix #2514 main_v11.0 clang (#2556)
fix #2575 main_v11.0 python_convert (#2577)
fix 2596 main v11.0 rpath compilation (#2600)
fix 2596 main v11.0 rpath compilation (#2613)
fix #2644 main_v11.0 percentile (#2645)
JohnHalleyGotway pushed a commit that referenced this issue Sep 15, 2023
Co-authored-by: jprestop <jpresto@ucar.edu>
Co-authored-by: Seth Linden <linden@seneca.rap.ucar.edu>
Co-authored-by: John Halley Gotway <johnhg@ucar.edu>
Co-authored-by: Daniel Adriaansen <dadriaan@ucar.edu>
Co-authored-by: John and Cindy <halleygotway@Halleys-Mac-mini.local>
Co-authored-by: rgbullock <bullock@ucar.edu>
Co-authored-by: Randy Bullock <bullock@seneca.rap.ucar.edu>
Co-authored-by: Dave Albo <dave@seneca.rap.ucar.edu>
Co-authored-by: Howard Soh <hsoh@seneca.rap.ucar.edu>
Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
Co-authored-by: hsoh-u <hsoh@ucar.edu>
Co-authored-by: MET Tools Test Account <met_test@seneca.rap.ucar.edu>
Co-authored-by: Seth Linden <linden@ucar.edu>
Co-authored-by: lisagoodrich <33230218+lisagoodrich@users.noreply.github.com>
Co-authored-by: davidalbo <dave@ucar.edu>
Co-authored-by: Lisa Goodrich <lisag@ucar.edu>
Co-authored-by: metplus-bot <97135045+metplus-bot@users.noreply.github.com>
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Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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Co-authored-by: Tracy Hertneky <39317287+hertneky@users.noreply.github.com>
Co-authored-by: David Albo <dave@ucar.edu>
Co-authored-by: Dan Adriaansen <dadriaan@ucar.edu>
fix 2518 dtypes appf docs (#2519)
fix 2531 compilation errors (#2533)
fix #2531 compilation_errors_configure (#2535)
fix #2514 develop clang (#2563)
fix #2575 develop python_convert (#2576)
Fix Python environment issue (#2407)
fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406)
fix #2380 develop override (#2382)
fix #2408 develop empty config (#2410)
fix #2390 develop compile zlib (#2404)
fix #2412 develop climo (#2422)
fix #2437 develop convert (#2439)
fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup.
fix #2452 develop airnow (#2454)
fix #2449 develop pdf (#2464)
fix #2402 develop sonarqube (#2468)
fix #2426 develop buoy (#2475)
fix 2596 main v11.1 rpath compilation (#2614)
fix #2514 main_v11.1 clang (#2628)
fix #2644 develop percentile (#2647)
JohnHalleyGotway pushed a commit that referenced this issue Oct 13, 2023
Co-authored-by: jprestop <jpresto@ucar.edu>
Co-authored-by: Seth Linden <linden@seneca.rap.ucar.edu>
Co-authored-by: John Halley Gotway <johnhg@ucar.edu>
Co-authored-by: Daniel Adriaansen <dadriaan@ucar.edu>
Co-authored-by: John and Cindy <halleygotway@Halleys-Mac-mini.local>
Co-authored-by: rgbullock <bullock@ucar.edu>
Co-authored-by: Randy Bullock <bullock@seneca.rap.ucar.edu>
Co-authored-by: Dave Albo <dave@seneca.rap.ucar.edu>
Co-authored-by: Howard Soh <hsoh@seneca.rap.ucar.edu>
Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
Co-authored-by: hsoh-u <hsoh@ucar.edu>
Co-authored-by: MET Tools Test Account <met_test@seneca.rap.ucar.edu>
Co-authored-by: Seth Linden <linden@ucar.edu>
Co-authored-by: lisagoodrich <33230218+lisagoodrich@users.noreply.github.com>
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Co-authored-by: David Albo <dave@ucar.edu>
Co-authored-by: Dan Adriaansen <dadriaan@ucar.edu>
fix 2518 dtypes appf docs (#2519)
fix 2531 compilation errors (#2533)
fix #2531 compilation_errors_configure (#2535)
fix #2514 develop clang (#2563)
fix #2575 develop python_convert (#2576)
Fix Python environment issue (#2407)
fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406)
fix #2380 develop override (#2382)
fix #2408 develop empty config (#2410)
fix #2390 develop compile zlib (#2404)
fix #2412 develop climo (#2422)
fix #2437 develop convert (#2439)
fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup.
fix #2452 develop airnow (#2454)
fix #2449 develop pdf (#2464)
fix #2402 develop sonarqube (#2468)
fix #2426 develop buoy (#2475)
fix 2596 main v11.1 rpath compilation (#2614)
fix #2514 main_v11.1 clang (#2628)
fix #2644 develop percentile (#2647)
JohnHalleyGotway pushed a commit that referenced this issue Nov 12, 2023
Co-authored-by: jprestop <jpresto@ucar.edu>
Co-authored-by: Seth Linden <linden@seneca.rap.ucar.edu>
Co-authored-by: John Halley Gotway <johnhg@ucar.edu>
Co-authored-by: Daniel Adriaansen <dadriaan@ucar.edu>
Co-authored-by: John and Cindy <halleygotway@Halleys-Mac-mini.local>
Co-authored-by: rgbullock <bullock@ucar.edu>
Co-authored-by: Randy Bullock <bullock@seneca.rap.ucar.edu>
Co-authored-by: Dave Albo <dave@seneca.rap.ucar.edu>
Co-authored-by: Howard Soh <hsoh@seneca.rap.ucar.edu>
Co-authored-by: George McCabe <23407799+georgemccabe@users.noreply.github.com>
Co-authored-by: hsoh-u <hsoh@ucar.edu>
Co-authored-by: MET Tools Test Account <met_test@seneca.rap.ucar.edu>
Co-authored-by: Seth Linden <linden@ucar.edu>
Co-authored-by: lisagoodrich <33230218+lisagoodrich@users.noreply.github.com>
Co-authored-by: davidalbo <dave@ucar.edu>
Co-authored-by: Lisa Goodrich <lisag@ucar.edu>
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Co-authored-by: Dan Adriaansen <dadriaan@ucar.edu>
Co-authored-by: Julie Prestopnik <jpresto@ucar.edu>
fix 2518 dtypes appf docs (#2519)
fix 2531 compilation errors (#2533)
fix #2531 compilation_errors_configure (#2535)
fix #2514 develop clang (#2563)
fix #2575 develop python_convert (#2576)
Fix Python environment issue (#2407)
fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406)
fix #2380 develop override (#2382)
fix #2408 develop empty config (#2410)
fix #2390 develop compile zlib (#2404)
fix #2412 develop climo (#2422)
fix #2437 develop convert (#2439)
fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup.
fix #2452 develop airnow (#2454)
fix #2449 develop pdf (#2464)
fix #2402 develop sonarqube (#2468)
fix #2426 develop buoy (#2475)
fix 2596 main v11.1 rpath compilation (#2614)
fix #2514 main_v11.1 clang (#2628)
fix #2644 develop percentile (#2647)
fix #2730 develop SI_BCU (#2732)
JohnHalleyGotway pushed a commit that referenced this issue Nov 17, 2023
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fix 2518 dtypes appf docs (#2519)
fix 2531 compilation errors (#2533)
fix #2531 compilation_errors_configure (#2535)
fix #2514 develop clang (#2563)
fix #2575 develop python_convert (#2576)
Fix Python environment issue (#2407)
fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2406)
fix #2380 develop override (#2382)
fix #2408 develop empty config (#2410)
fix #2390 develop compile zlib (#2404)
fix #2412 develop climo (#2422)
fix #2437 develop convert (#2439)
fix for develop, for #2437, forgot one reference to the search_parent for a dictionary lookup.
fix #2452 develop airnow (#2454)
fix #2449 develop pdf (#2464)
fix #2402 develop sonarqube (#2468)
fix #2426 develop buoy (#2475)
fix 2596 main v11.1 rpath compilation (#2614)
fix #2514 main_v11.1 clang (#2628)
fix #2644 develop percentile (#2647)
fix #2730 develop SI_BCU (#2732)
JohnHalleyGotway added a commit that referenced this issue Dec 18, 2023
…2770)

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fix #2389 main_v11.0 flowchart (#2391)
fix definitions of G172 and G220 based on comments in NOAA-EMC/NCEPLIBS-w3emc#157. (#2405)
fix #2380 main_v11.0 override (#2381)
fix #2408 main_v11.0 empty config (#2409)
fix #2390 main_v11.0 fix compiling hdf5 with zlib and handle NetCDF-C zip (#2403)
fix #2415 main_v11.0 modulefiles (#2416)
fix #2412 main_v11.0 climo (#2420)
fix #2426 main_v11.0 buoy (#2432)
fix #2437 main_v11.0 convert (#2438)
fix for main_v11.0, for #2437, forgot one reference to the search_parent for a dictionary lookup.
fix 2428 python from env main v11.0 (#2443)
fix 2428 python csv input (#2450)
fix #2452 main_v11.0 airnow (#2453)
fix #2402 main_v11.0 sonarqube (First PR) (#2447)
fix #2449 main_v11.0 pdf (#2465)
fix 2428 python csv input (#2467)
fix #2514 main_v11.0 clang (#2556)
fix #2575 main_v11.0 python_convert (#2577)
fix 2596 main v11.0 rpath compilation (#2600)
fix 2596 main v11.0 rpath compilation (#2613)
fix #2644 main_v11.0 percentile (#2645)
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Labels
MET: Python Embedding priority: blocker Blocker requestor: METplus Team METplus Development Team type: bug Fix something that is not working
Projects
Status: Done
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