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Synchronize stable with develop branch #172

Merged
merged 280 commits into from
Jan 23, 2024
Merged

Synchronize stable with develop branch #172

merged 280 commits into from
Jan 23, 2024
This pull request is big! We’re only showing the most recent 250 commits.

Commits on Apr 2, 2023

  1. fix data type

    @zhangwei217245
    zhangwei217245 committed Apr 2, 2023
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  2. fix data type

    @zhangwei217245
    zhangwei217245 committed Apr 2, 2023
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  3. add client side statistics

    @zhangwei217245
    zhangwei217245 committed Apr 2, 2023
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  4. add client side statistics

    @zhangwei217245
    zhangwei217245 committed Apr 2, 2023
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  5. fix format

    @zhangwei217245
    zhangwei217245 committed Apr 2, 2023
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Commits on Apr 3, 2023

  1. clang formatter

    @zhangwei217245
    zhangwei217245 committed Apr 3, 2023
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  2. update CMake

    @zhangwei217245
    zhangwei217245 committed Apr 3, 2023
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  3. update CMake

    @zhangwei217245
    zhangwei217245 committed Apr 3, 2023
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  4. update CMake

    @zhangwei217245
    zhangwei217245 committed Apr 3, 2023
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  5. free allocated memory properly

    @zhangwei217245
    zhangwei217245 committed Apr 3, 2023
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  6. Merge branch 'develop' into develop

    @houjun
    houjun authored Apr 3, 2023
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  7. clang format

    @zhangwei217245
    zhangwei217245 committed Apr 3, 2023
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  8. Merge branch 'develop' of github.com:zhangwei217245/pdc into develop

    @zhangwei217245
    zhangwei217245 committed Apr 3, 2023
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  9. clang format

    @zhangwei217245
    zhangwei217245 committed Apr 3, 2023
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  10. clang-format-10

    @zhangwei217245
    zhangwei217245 committed Apr 3, 2023
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  11. change file name

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    zhangwei217245 committed Apr 3, 2023
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Commits on Apr 4, 2023

  1. address review comments

    @zhangwei217245
    zhangwei217245 committed Apr 4, 2023
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  2. update llsm importer

    @zhangwei217245
    zhangwei217245 committed Apr 4, 2023
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  3. update llsm importer

    @zhangwei217245
    zhangwei217245 committed Apr 4, 2023
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  4. update server checkpoint intervals

    @zhangwei217245
    zhangwei217245 committed Apr 4, 2023
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  5. Merge branch 'hpc-io:develop' into develop

    @zhangwei217245
    zhangwei217245 authored Apr 4, 2023
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  6. update gitignore

    @zhangwei217245
    zhangwei217245 committed Apr 4, 2023
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Commits on Apr 5, 2023

  1. adding job scripts

    @zhangwei217245
    zhangwei217245 committed Apr 5, 2023
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  2. adding one debugging msg

    @zhangwei217245
    zhangwei217245 committed Apr 5, 2023
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  3. update container creation to collective mode for debugging purpose

    @zhangwei217245
    zhangwei217245 committed Apr 5, 2023
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  4. update container creation to collective mode for debugging purpose

    @zhangwei217245
    zhangwei217245 committed Apr 5, 2023
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  5. update container creation to collective mode for debugging purpose

    @zhangwei217245
    zhangwei217245 committed Apr 5, 2023
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  6. update container creation to collective mode for debugging purpose

    @zhangwei217245
    zhangwei217245 committed Apr 5, 2023
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Commits on Apr 6, 2023

  1. update output for uint64_t

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    zhangwei217245 committed Apr 6, 2023
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  2. add scripts

    @zhangwei217245
    zhangwei217245 committed Apr 6, 2023
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  3. update output for uint64_t

    @zhangwei217245
    zhangwei217245 committed Apr 6, 2023
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  4. update output for uint64_t

    @zhangwei217245
    zhangwei217245 committed Apr 6, 2023
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  5. update output for uint64_t

    @zhangwei217245
    zhangwei217245 committed Apr 6, 2023
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  6. update scripts

    @zhangwei217245
    zhangwei217245 committed Apr 6, 2023
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  7. update scripts

    @zhangwei217245
    zhangwei217245 committed Apr 6, 2023
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  8. delete debugging message

    @zhangwei217245
    zhangwei217245 committed Apr 6, 2023
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  9. make Cmake to publish scripts directory

    @zhangwei217245
    zhangwei217245 committed Apr 6, 2023
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  10. make Cmake to publish scripts directory

    @zhangwei217245
    zhangwei217245 committed Apr 6, 2023
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  11. make Cmake to publish scripts directory

    @zhangwei217245
    zhangwei217245 committed Apr 6, 2023
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  12. make Cmake to publish scripts directory

    @zhangwei217245
    zhangwei217245 committed Apr 6, 2023
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  13. make Cmake to publish scripts directory

    @zhangwei217245
    zhangwei217245 committed Apr 6, 2023
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  14. update tag names

    @zhangwei217245
    zhangwei217245 committed Apr 6, 2023
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  15. update tag names

    @zhangwei217245
    zhangwei217245 committed Apr 6, 2023
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  16. update query startingpos

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    zhangwei217245 committed Apr 6, 2023
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  17. update query startingpos

    @zhangwei217245
    zhangwei217245 committed Apr 6, 2023
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  18. update job scripts

    @zhangwei217245
    zhangwei217245 committed Apr 6, 2023
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  19. add progressive timing for kvtag_add_get_scale

    @zhangwei217245
    zhangwei217245 committed Apr 6, 2023
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  20. fix iteration count in final report

    @zhangwei217245
    zhangwei217245 committed Apr 6, 2023
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Commits on Apr 7, 2023

  1. update job scripts and benckmark program

    @zhangwei217245
    zhangwei217245 committed Apr 7, 2023
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  2. update message format

    @zhangwei217245
    zhangwei217245 committed Apr 7, 2023
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  3. update message format

    @zhangwei217245
    zhangwei217245 committed Apr 7, 2023
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  4. update message format

    @zhangwei217245
    zhangwei217245 committed Apr 7, 2023
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  5. update message format

    @zhangwei217245
    zhangwei217245 committed Apr 7, 2023
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  6. clang format

    @zhangwei217245
    zhangwei217245 committed Apr 7, 2023
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Commits on Apr 13, 2023

  1. update job scripts

    @zhangwei217245
    zhangwei217245 committed Apr 13, 2023
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  2. resolve conflict

    @zhangwei217245
    zhangwei217245 committed Apr 13, 2023
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  3. comment off object/container close procedure in benchmark to save nod… 

    …e hours
    @zhangwei217245
    zhangwei217245 committed Apr 13, 2023
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  4. change the max number of object to 1M

    @zhangwei217245
    zhangwei217245 committed Apr 13, 2023
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  5. change the max length of attribute value

    @zhangwei217245
    zhangwei217245 committed Apr 13, 2023
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  6. change the max length of attribute value

    @zhangwei217245
    zhangwei217245 committed Apr 13, 2023
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  7. resolve conflict

    @zhangwei217245
    zhangwei217245 committed Apr 13, 2023
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Commits on Apr 14, 2023

  1. llsm tiff import test

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    zhangwei217245 committed Apr 14, 2023
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  2. llsm tiff import test

    @zhangwei217245
    zhangwei217245 committed Apr 14, 2023
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  3. llsm tiff import test

    @zhangwei217245
    zhangwei217245 committed Apr 14, 2023
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  4. llsm tiff import test

    @zhangwei217245
    zhangwei217245 committed Apr 14, 2023
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  5. update code

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    zhangwei217245 committed Apr 14, 2023
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  6. update code

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    zhangwei217245 committed Apr 14, 2023
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  7. update code

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    zhangwei217245 committed Apr 14, 2023
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  8. update code

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    zhangwei217245 committed Apr 14, 2023
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  9. update code

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    zhangwei217245 committed Apr 14, 2023
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  10. update code

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    zhangwei217245 committed Apr 14, 2023
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  11. update code

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    zhangwei217245 committed Apr 14, 2023
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  12. update code

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    zhangwei217245 committed Apr 14, 2023
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  13. update code

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    zhangwei217245 committed Apr 14, 2023
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  14. update code

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    zhangwei217245 committed Apr 14, 2023
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  15. update code

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    zhangwei217245 committed Apr 14, 2023
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Commits on Apr 19, 2023

  1. update cmake and llsm_importer

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    zhangwei217245 committed Apr 19, 2023
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  2. update cmake and llsm_importer

    @zhangwei217245
    zhangwei217245 committed Apr 19, 2023
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  3. close if in cmake

    @zhangwei217245
    zhangwei217245 committed Apr 19, 2023
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  4. cmake fix tiff

    @zhangwei217245
    zhangwei217245 committed Apr 19, 2023
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  5. cmake policy to suppress warning

    @zhangwei217245
    zhangwei217245 committed Apr 19, 2023
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  6. add pdc include dir

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    zhangwei217245 committed Apr 19, 2023
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  7. update code

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    zhangwei217245 committed Apr 19, 2023
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  8. update code

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    zhangwei217245 committed Apr 19, 2023
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  9. update code

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    zhangwei217245 committed Apr 19, 2023
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  10. update code

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  11. update code

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    zhangwei217245 committed Apr 19, 2023
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  12. update code

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    zhangwei217245 committed Apr 19, 2023
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  13. Merge branch 'hpc-io:develop' into develop

    @zhangwei217245
    zhangwei217245 authored Apr 19, 2023
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Commits on Apr 20, 2023

  1. update array generating method

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    zhangwei217245 committed Apr 20, 2023
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  2. update array generating method

    @zhangwei217245
    zhangwei217245 committed Apr 20, 2023
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  3. update array generating method

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  4. update array generating method

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    zhangwei217245 committed Apr 20, 2023
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  5. update CMakeLists

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    zhangwei217245 committed Apr 20, 2023
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  6. update CMakeLists

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  7. update CMakeLists

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    zhangwei217245 committed Apr 20, 2023
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  8. update CMakeLists

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Commits on Apr 21, 2023

  1. update CMakeLists

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  2. fix return type

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    zhangwei217245 committed Apr 21, 2023
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  3. fix return type

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    zhangwei217245 committed Apr 21, 2023
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  4. add timing

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    zhangwei217245 committed Apr 21, 2023
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  5. add timing

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    zhangwei217245 committed Apr 21, 2023
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  6. fix output

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    zhangwei217245 committed Apr 21, 2023
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Commits on Apr 23, 2023

  1. llsm tiff importer 1st version: read csv and import tiff files to PDC… 

    …, adding metadata available in CSV files and TIFF loader
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  2. fix vairable name

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    zhangwei217245 committed Apr 23, 2023
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  3. fix cmake

    @zhangwei217245
    zhangwei217245 committed Apr 23, 2023
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  4. fix cmake

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    zhangwei217245 committed Apr 23, 2023
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  5. fix cmake

    @zhangwei217245
    zhangwei217245 committed Apr 23, 2023
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  6. fix cmake

    @zhangwei217245
    zhangwei217245 committed Apr 23, 2023
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  7. fix cmake

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    zhangwei217245 committed Apr 23, 2023
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  8. fix cmake

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    zhangwei217245 committed Apr 23, 2023
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  9. add scripts

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    zhangwei217245 committed Apr 23, 2023
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  10. add scripts

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    zhangwei217245 committed Apr 23, 2023
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  11. add scripts

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    zhangwei217245 committed Apr 23, 2023
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  12. debugging for nonMPI program

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  13. debugging for nonMPI program

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  14. debugging for nonMPI program

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  15. clang format, without PDC, everything works perfectly. program fails … 

    …at PDC init stage where PDCprop_create(PDC_CONT_CREATE, pdc) is being created
    @zhangwei217245
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  16. enable MPI

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  17. enable MPI

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  18. enlarge BCase size

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    zhangwei217245 committed Apr 23, 2023
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  19. enlarge BCase size

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  20. enlarge BCase size

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  21. resolve bcast count

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Commits on Apr 24, 2023

  1. llsm data path in script

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  2. llsm data path in script

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  3. update csv reader

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    zhangwei217245 committed Apr 24, 2023
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  4. update csv reader

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  5. update csv reader

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    zhangwei217245 committed Apr 24, 2023
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  6. update pdc

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  7. update pdc

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  8. update pdc

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  9. update pdc

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  10. update pdc

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  11. update pdc

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  12. update pdc

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  13. update pdc

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  14. update pdc

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  15. update pdc

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  16. update pdc

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  17. enlarge max write

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  18. update pdc

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  19. update pdc

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  20. update pdc

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Commits on Apr 25, 2023

  1. update pdc

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  2. Merge branch 'hpc-io:develop' into develop

    @zhangwei217245
    zhangwei217245 authored Apr 25, 2023
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  3. update pdc

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Commits on Apr 26, 2023

  1. update pdc_import.c

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  2. update pdc_import.c

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  3. update pdc_export.c

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    zhangwei217245 committed Apr 26, 2023
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  4. update pdc_import.c

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  5. update pdc_import.c

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  6. update pdc_import.c

    @zhangwei217245
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  7. update pdc_import.c

    @zhangwei217245
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  8. update tools/cmake

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  9. clang format

    @zhangwei217245
    zhangwei217245 committed Apr 26, 2023
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  10. clang format

    @zhangwei217245
    zhangwei217245 committed Apr 26, 2023
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Commits on May 8, 2023

  1. Merge tools/llsm_importer (#81) 

    * remove unnecessary install block from CMakeLists.txt

* update output

* Revert "update output"

This reverts commit fe1f8b4.

* build kvtag_add_get_scale

* comment off free

* update code

* 1. kvtag_scale_add_get added \n 2. uint64_t support for obj/tag/query count \n 3. moving work assigning block downwards right before creating objects \n 4. everything is tested working

* do while loop added, tested with 1m object and works

* 1m objects test works, 10m object test fail as the original also fails

* add new executable to test set

* enlarge PDC_SERVER_ID_INTERVAL

* update code

* update console args

* add p search test

* add console arg for changing number of attributes per object

* free allocated memory

* fix query count issue

* fix attr length definition

* code refactored

* code refactored

* code refactored

* code refactored

* code refactored

* code refactored

* fix data type

* fix data type

* fix data type

* add client side statistics

* add client side statistics

* fix format

* clang formatter

* update CMake

* update CMake

* update CMake

* free allocated memory properly

* clang format

* clang format

* clang-format-10

* change file name

* address review comments

* update llsm importer

* update llsm importer

* update server checkpoint intervals

* update gitignore

* adding job scripts

* adding one debugging msg

* update container creation to collective mode for debugging purpose

* update container creation to collective mode for debugging purpose

* update container creation to collective mode for debugging purpose

* update container creation to collective mode for debugging purpose

* update output for uint64_t

* add scripts

* update output for uint64_t

* update output for uint64_t

* update output for uint64_t

* update scripts

* update scripts

* delete debugging message

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* update tag names

* update tag names

* update query startingpos

* update query startingpos

* update job scripts

* add progressive timing for kvtag_add_get_scale

* fix iteration count in final report

* update job scripts and benckmark program

* update message format

* update message format

* update message format

* update message format

* clang format

* update job scripts

* comment off object/container close procedure in  benchmark to save node hours

* change the max number of object to 1M

* change the max length of attribute value

* change the max length of attribute value

* llsm tiff import test

* llsm tiff import test

* llsm tiff import test

* llsm tiff import test

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update cmake and llsm_importer

* update cmake and llsm_importer

* close if in cmake

* cmake fix tiff

* cmake policy to suppress warning

* add pdc include dir

* update code

* update code

* update code

* update code

* update code

* update code

* update array generating method

* update array generating method

* update array generating method

* update array generating method

* update CMakeLists

* update CMakeLists

* update CMakeLists

* update CMakeLists

* update CMakeLists

* fix return type

* fix return type

* add timing

* add timing

* fix output

* llsm tiff importer 1st version: read csv and import tiff files to PDC, adding metadata available in CSV files and TIFF loader

* fix vairable name

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* add scripts

* add scripts

* add scripts

* debugging for nonMPI program

* debugging for nonMPI program

* debugging for nonMPI program

* clang format, without PDC, everything works perfectly. program fails at PDC init stage where PDCprop_create(PDC_CONT_CREATE, pdc) is being created

* enable MPI

* enable MPI

* enlarge BCase size

* enlarge BCase size

* enlarge BCase size

* resolve bcast count

* llsm data path in script

* llsm data path in script

* update csv reader

* update csv reader

* update csv reader

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* enlarge max write

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc_import.c

* update pdc_import.c

* update pdc_export.c

* update pdc_import.c

* update pdc_import.c

* update pdc_import.c

* update pdc_import.c

* update tools/cmake

* clang format

* clang format

---------

Co-authored-by: Houjun Tang <htang4@lbl.gov>
    @zhangwei217245 @houjun
    zhangwei217245 and houjun authored May 8, 2023
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  2. Merge branch 'stable' into develop

    @houjun
    houjun committed May 8, 2023
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  3. Merge branch 'stable' into develop

    @houjun
    houjun committed May 8, 2023
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Commits on May 9, 2023

  1. Merge branch 'hpc-io:develop' into develop

    @zhangwei217245
    zhangwei217245 authored May 9, 2023
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  2. Merge branch 'hpc-io:stable' into feature/llsm_importer

    @zhangwei217245
    zhangwei217245 authored May 9, 2023
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Commits on May 10, 2023

  1. added a tutorial for llsm_importer

    @zhangwei217245
    zhangwei217245 committed May 10, 2023
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  2. added a tutorial for llsm_importer

    @zhangwei217245
    zhangwei217245 committed May 10, 2023
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  3. Merge branch 'feature/llsm_importer' of github.com:zhangwei217245/pdc… 

    … into feature/llsm_importer
    @zhangwei217245
    zhangwei217245 committed May 10, 2023
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  4. Adding tutorial for llsm_importer tool. (#84) 

    * remove unnecessary install block from CMakeLists.txt

* update output

* Revert "update output"

This reverts commit fe1f8b4.

* build kvtag_add_get_scale

* comment off free

* update code

* 1. kvtag_scale_add_get added \n 2. uint64_t support for obj/tag/query count \n 3. moving work assigning block downwards right before creating objects \n 4. everything is tested working

* do while loop added, tested with 1m object and works

* 1m objects test works, 10m object test fail as the original also fails

* add new executable to test set

* enlarge PDC_SERVER_ID_INTERVAL

* update code

* update console args

* add p search test

* add console arg for changing number of attributes per object

* free allocated memory

* fix query count issue

* fix attr length definition

* code refactored

* code refactored

* code refactored

* code refactored

* code refactored

* code refactored

* fix data type

* fix data type

* fix data type

* add client side statistics

* add client side statistics

* fix format

* clang formatter

* update CMake

* update CMake

* update CMake

* free allocated memory properly

* clang format

* clang format

* clang-format-10

* change file name

* address review comments

* update llsm importer

* update llsm importer

* update server checkpoint intervals

* update gitignore

* adding job scripts

* adding one debugging msg

* update container creation to collective mode for debugging purpose

* update container creation to collective mode for debugging purpose

* update container creation to collective mode for debugging purpose

* update container creation to collective mode for debugging purpose

* update output for uint64_t

* add scripts

* update output for uint64_t

* update output for uint64_t

* update output for uint64_t

* update scripts

* update scripts

* delete debugging message

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* update tag names

* update tag names

* update query startingpos

* update query startingpos

* update job scripts

* add progressive timing for kvtag_add_get_scale

* fix iteration count in final report

* update job scripts and benckmark program

* update message format

* update message format

* update message format

* update message format

* clang format

* update job scripts

* comment off object/container close procedure in  benchmark to save node hours

* change the max number of object to 1M

* change the max length of attribute value

* change the max length of attribute value

* llsm tiff import test

* llsm tiff import test

* llsm tiff import test

* llsm tiff import test

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update cmake and llsm_importer

* update cmake and llsm_importer

* close if in cmake

* cmake fix tiff

* cmake policy to suppress warning

* add pdc include dir

* update code

* update code

* update code

* update code

* update code

* update code

* update array generating method

* update array generating method

* update array generating method

* update array generating method

* update CMakeLists

* update CMakeLists

* update CMakeLists

* update CMakeLists

* update CMakeLists

* fix return type

* fix return type

* add timing

* add timing

* fix output

* llsm tiff importer 1st version: read csv and import tiff files to PDC, adding metadata available in CSV files and TIFF loader

* fix vairable name

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* add scripts

* add scripts

* add scripts

* debugging for nonMPI program

* debugging for nonMPI program

* debugging for nonMPI program

* clang format, without PDC, everything works perfectly. program fails at PDC init stage where PDCprop_create(PDC_CONT_CREATE, pdc) is being created

* enable MPI

* enable MPI

* enlarge BCase size

* enlarge BCase size

* enlarge BCase size

* resolve bcast count

* llsm data path in script

* llsm data path in script

* update csv reader

* update csv reader

* update csv reader

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* enlarge max write

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc_import.c

* update pdc_import.c

* update pdc_export.c

* update pdc_import.c

* update pdc_import.c

* update pdc_import.c

* update pdc_import.c

* update tools/cmake

* clang format

* clang format

* added a tutorial for llsm_importer

* added a tutorial for llsm_importer

---------

Co-authored-by: Houjun Tang <htang4@lbl.gov>
    @zhangwei217245 @houjun
    zhangwei217245 and houjun authored May 10, 2023
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Commits on May 12, 2023

  1. make sure the line feed is included for string attribute

    @zhangwei217245
    zhangwei217245 committed May 12, 2023
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Commits on May 16, 2023

  1. update timing for overall completion time

    @zhangwei217245
    zhangwei217245 committed May 16, 2023
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Commits on May 19, 2023

  1. Update .gitlab-ci.yml removing Cori 

    Remove Cori CI in advance of Cori's decommission by the end of the month.
    @jeanbez
    jeanbez authored May 19, 2023
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  2. Remove unnecessary fflush call 

    Signed-off-by: Chen Wang <wangvsa@gmail.com>
    @wangvsa
    wangvsa committed May 19, 2023
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Commits on May 23, 2023

  1. update formatting

    @zhangwei217245
    zhangwei217245 committed May 23, 2023
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  2. LLSM_importer Tutorial and Timing for job completion time. (#86) 

    * remove unnecessary install block from CMakeLists.txt

* update output

* Revert "update output"

This reverts commit fe1f8b4.

* build kvtag_add_get_scale

* comment off free

* update code

* 1. kvtag_scale_add_get added \n 2. uint64_t support for obj/tag/query count \n 3. moving work assigning block downwards right before creating objects \n 4. everything is tested working

* do while loop added, tested with 1m object and works

* 1m objects test works, 10m object test fail as the original also fails

* add new executable to test set

* enlarge PDC_SERVER_ID_INTERVAL

* update code

* update console args

* add p search test

* add console arg for changing number of attributes per object

* free allocated memory

* fix query count issue

* fix attr length definition

* code refactored

* code refactored

* code refactored

* code refactored

* code refactored

* code refactored

* fix data type

* fix data type

* fix data type

* add client side statistics

* add client side statistics

* fix format

* clang formatter

* update CMake

* update CMake

* update CMake

* free allocated memory properly

* clang format

* clang format

* clang-format-10

* change file name

* address review comments

* update llsm importer

* update llsm importer

* update server checkpoint intervals

* update gitignore

* adding job scripts

* adding one debugging msg

* update container creation to collective mode for debugging purpose

* update container creation to collective mode for debugging purpose

* update container creation to collective mode for debugging purpose

* update container creation to collective mode for debugging purpose

* update output for uint64_t

* add scripts

* update output for uint64_t

* update output for uint64_t

* update output for uint64_t

* update scripts

* update scripts

* delete debugging message

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* update tag names

* update tag names

* update query startingpos

* update query startingpos

* update job scripts

* add progressive timing for kvtag_add_get_scale

* fix iteration count in final report

* update job scripts and benckmark program

* update message format

* update message format

* update message format

* update message format

* clang format

* update job scripts

* comment off object/container close procedure in  benchmark to save node hours

* change the max number of object to 1M

* change the max length of attribute value

* change the max length of attribute value

* llsm tiff import test

* llsm tiff import test

* llsm tiff import test

* llsm tiff import test

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update cmake and llsm_importer

* update cmake and llsm_importer

* close if in cmake

* cmake fix tiff

* cmake policy to suppress warning

* add pdc include dir

* update code

* update code

* update code

* update code

* update code

* update code

* update array generating method

* update array generating method

* update array generating method

* update array generating method

* update CMakeLists

* update CMakeLists

* update CMakeLists

* update CMakeLists

* update CMakeLists

* fix return type

* fix return type

* add timing

* add timing

* fix output

* llsm tiff importer 1st version: read csv and import tiff files to PDC, adding metadata available in CSV files and TIFF loader

* fix vairable name

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* add scripts

* add scripts

* add scripts

* debugging for nonMPI program

* debugging for nonMPI program

* debugging for nonMPI program

* clang format, without PDC, everything works perfectly. program fails at PDC init stage where PDCprop_create(PDC_CONT_CREATE, pdc) is being created

* enable MPI

* enable MPI

* enlarge BCase size

* enlarge BCase size

* enlarge BCase size

* resolve bcast count

* llsm data path in script

* llsm data path in script

* update csv reader

* update csv reader

* update csv reader

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* enlarge max write

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc_import.c

* update pdc_import.c

* update pdc_export.c

* update pdc_import.c

* update pdc_import.c

* update pdc_import.c

* update pdc_import.c

* update tools/cmake

* clang format

* clang format

* added a tutorial for llsm_importer

* added a tutorial for llsm_importer

* make sure the line feed is included for string attribute

* update timing for overall completion time

* update formatting

---------

Co-authored-by: Houjun Tang <htang4@lbl.gov>
    @zhangwei217245 @houjun
    zhangwei217245 and houjun authored May 23, 2023
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  3. Fix Issue #85, server segfault when another client application with d… 

    …ifferent number of ranks connects to it
    @houjun
    houjun committed May 23, 2023
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  4. Committing clang-format changes

    @github-actions
    github-actions[bot] committed May 23, 2023
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Commits on Jun 5, 2023

  1. update metrics

    @jeanbez
    jeanbez committed Jun 5, 2023
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Commits on Jun 13, 2023

  1. Update .gitlab-ci.yml

    @jeanbez
    jeanbez authored Jun 13, 2023
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  2. update VPIC output timing precision (#88) 

    * update VPIC output timing precision

* update timing to make consistent
    @jeanbez
    jeanbez authored Jun 13, 2023
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Commits on Jun 15, 2023

  1. Merge branch 'hpc-io:develop' into develop

    @zhangwei217245
    zhangwei217245 authored Jun 15, 2023
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  2. llsm_importer (#1) 

    formatter on llsm_importer
    @zhangwei217245
    zhangwei217245 authored Jun 15, 2023
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  3. Tiff Parallel Reader sync to latest version (#89) 

    * remove unnecessary install block from CMakeLists.txt

* update output

* Revert "update output"

This reverts commit fe1f8b4.

* build kvtag_add_get_scale

* comment off free

* update code

* 1. kvtag_scale_add_get added \n 2. uint64_t support for obj/tag/query count \n 3. moving work assigning block downwards right before creating objects \n 4. everything is tested working

* do while loop added, tested with 1m object and works

* 1m objects test works, 10m object test fail as the original also fails

* add new executable to test set

* enlarge PDC_SERVER_ID_INTERVAL

* update code

* update console args

* add p search test

* add console arg for changing number of attributes per object

* free allocated memory

* fix query count issue

* fix attr length definition

* code refactored

* code refactored

* code refactored

* code refactored

* code refactored

* code refactored

* fix data type

* fix data type

* fix data type

* add client side statistics

* add client side statistics

* fix format

* clang formatter

* update CMake

* update CMake

* update CMake

* free allocated memory properly

* clang format

* clang format

* clang-format-10

* change file name

* address review comments

* update llsm importer

* update llsm importer

* update server checkpoint intervals

* update gitignore

* adding job scripts

* adding one debugging msg

* update container creation to collective mode for debugging purpose

* update container creation to collective mode for debugging purpose

* update container creation to collective mode for debugging purpose

* update container creation to collective mode for debugging purpose

* update output for uint64_t

* add scripts

* update output for uint64_t

* update output for uint64_t

* update output for uint64_t

* update scripts

* update scripts

* delete debugging message

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* update tag names

* update tag names

* update query startingpos

* update query startingpos

* update job scripts

* add progressive timing for kvtag_add_get_scale

* fix iteration count in final report

* update job scripts and benckmark program

* update message format

* update message format

* update message format

* update message format

* clang format

* update job scripts

* comment off object/container close procedure in  benchmark to save node hours

* change the max number of object to 1M

* change the max length of attribute value

* change the max length of attribute value

* llsm tiff import test

* llsm tiff import test

* llsm tiff import test

* llsm tiff import test

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update cmake and llsm_importer

* update cmake and llsm_importer

* close if in cmake

* cmake fix tiff

* cmake policy to suppress warning

* add pdc include dir

* update code

* update code

* update code

* update code

* update code

* update code

* update array generating method

* update array generating method

* update array generating method

* update array generating method

* update CMakeLists

* update CMakeLists

* update CMakeLists

* update CMakeLists

* update CMakeLists

* fix return type

* fix return type

* add timing

* add timing

* fix output

* llsm tiff importer 1st version: read csv and import tiff files to PDC, adding metadata available in CSV files and TIFF loader

* fix vairable name

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* add scripts

* add scripts

* add scripts

* debugging for nonMPI program

* debugging for nonMPI program

* debugging for nonMPI program

* clang format, without PDC, everything works perfectly. program fails at PDC init stage where PDCprop_create(PDC_CONT_CREATE, pdc) is being created

* enable MPI

* enable MPI

* enlarge BCase size

* enlarge BCase size

* enlarge BCase size

* resolve bcast count

* llsm data path in script

* llsm data path in script

* update csv reader

* update csv reader

* update csv reader

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* enlarge max write

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc_import.c

* update pdc_import.c

* update pdc_export.c

* update pdc_import.c

* update pdc_import.c

* update pdc_import.c

* update pdc_import.c

* update tools/cmake

* clang format

* clang format

* added a tutorial for llsm_importer

* added a tutorial for llsm_importer

* make sure the line feed is included for string attribute

* update timing for overall completion time

* update formatting

* llsm_importer (#1)

formatter on llsm_importer

---------

Co-authored-by: Houjun Tang <htang4@lbl.gov>
    @zhangwei217245 @houjun
    zhangwei217245 and houjun authored Jun 15, 2023
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Commits on Jun 16, 2023

  1. Update .gitlab-ci.yml

    @jeanbez
    jeanbez authored Jun 16, 2023
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Commits on Jun 19, 2023

  1. add type for kvtag structure (#2) 

    * upate metadata type system

* update serde framework to coupe with the new data type system

* replace unnecessary data types

* adding type for pdc_kvtag_t, all occurances are fixed

* update new commons CMake for publishing commons

* commons compilation passed

* compiled
    @zhangwei217245
    zhangwei217245 authored Jun 19, 2023
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  2. Feature/metadata type (#3) 

    * upate metadata type system

* update serde framework to coupe with the new data type system

* replace unnecessary data types

* adding type for pdc_kvtag_t, all occurances are fixed

* update new commons CMake for publishing commons

* commons compilation passed

* compiled

* remove unnecessary header files from installation

* resolve conflict

* add important files

* clang formatting

* update cmake
    @zhangwei217245
    zhangwei217245 authored Jun 19, 2023
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Commits on Jun 21, 2023

  1. Data type for new kvtag (including refactoring and serde framework) (#90 

    )

* remove unnecessary install block from CMakeLists.txt

* update output

* Revert "update output"

This reverts commit fe1f8b4.

* build kvtag_add_get_scale

* comment off free

* update code

* 1. kvtag_scale_add_get added \n 2. uint64_t support for obj/tag/query count \n 3. moving work assigning block downwards right before creating objects \n 4. everything is tested working

* do while loop added, tested with 1m object and works

* 1m objects test works, 10m object test fail as the original also fails

* add new executable to test set

* enlarge PDC_SERVER_ID_INTERVAL

* update code

* update console args

* add p search test

* add console arg for changing number of attributes per object

* free allocated memory

* fix query count issue

* fix attr length definition

* code refactored

* code refactored

* code refactored

* code refactored

* code refactored

* code refactored

* fix data type

* fix data type

* fix data type

* add client side statistics

* add client side statistics

* fix format

* clang formatter

* update CMake

* update CMake

* update CMake

* free allocated memory properly

* clang format

* clang format

* clang-format-10

* change file name

* address review comments

* update llsm importer

* update llsm importer

* update server checkpoint intervals

* update gitignore

* adding job scripts

* adding one debugging msg

* update container creation to collective mode for debugging purpose

* update container creation to collective mode for debugging purpose

* update container creation to collective mode for debugging purpose

* update container creation to collective mode for debugging purpose

* update output for uint64_t

* add scripts

* update output for uint64_t

* update output for uint64_t

* update output for uint64_t

* update scripts

* update scripts

* delete debugging message

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* update tag names

* update tag names

* update query startingpos

* update query startingpos

* update job scripts

* add progressive timing for kvtag_add_get_scale

* fix iteration count in final report

* update job scripts and benckmark program

* update message format

* update message format

* update message format

* update message format

* clang format

* update job scripts

* comment off object/container close procedure in  benchmark to save node hours

* change the max number of object to 1M

* change the max length of attribute value

* change the max length of attribute value

* llsm tiff import test

* llsm tiff import test

* llsm tiff import test

* llsm tiff import test

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update cmake and llsm_importer

* update cmake and llsm_importer

* close if in cmake

* cmake fix tiff

* cmake policy to suppress warning

* add pdc include dir

* update code

* update code

* update code

* update code

* update code

* update code

* update array generating method

* update array generating method

* update array generating method

* update array generating method

* update CMakeLists

* update CMakeLists

* update CMakeLists

* update CMakeLists

* update CMakeLists

* fix return type

* fix return type

* add timing

* add timing

* fix output

* llsm tiff importer 1st version: read csv and import tiff files to PDC, adding metadata available in CSV files and TIFF loader

* fix vairable name

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* add scripts

* add scripts

* add scripts

* debugging for nonMPI program

* debugging for nonMPI program

* debugging for nonMPI program

* clang format, without PDC, everything works perfectly. program fails at PDC init stage where PDCprop_create(PDC_CONT_CREATE, pdc) is being created

* enable MPI

* enable MPI

* enlarge BCase size

* enlarge BCase size

* enlarge BCase size

* resolve bcast count

* llsm data path in script

* llsm data path in script

* update csv reader

* update csv reader

* update csv reader

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* enlarge max write

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc_import.c

* update pdc_import.c

* update pdc_export.c

* update pdc_import.c

* update pdc_import.c

* update pdc_import.c

* update pdc_import.c

* update tools/cmake

* clang format

* clang format

* added a tutorial for llsm_importer

* added a tutorial for llsm_importer

* make sure the line feed is included for string attribute

* update timing for overall completion time

* update formatting

* llsm_importer (#1)

formatter on llsm_importer

* add type for kvtag structure (#2)

* upate metadata type system

* update serde framework to coupe with the new data type system

* replace unnecessary data types

* adding type for pdc_kvtag_t, all occurances are fixed

* update new commons CMake for publishing commons

* commons compilation passed

* compiled

* Feature/metadata type (#3)

* upate metadata type system

* update serde framework to coupe with the new data type system

* replace unnecessary data types

* adding type for pdc_kvtag_t, all occurances are fixed

* update new commons CMake for publishing commons

* commons compilation passed

* compiled

* remove unnecessary header files from installation

* resolve conflict

* add important files

* clang formatting

* update cmake

---------

Co-authored-by: Houjun Tang <htang4@lbl.gov>
    @zhangwei217245 @houjun
    zhangwei217245 and houjun authored Jun 21, 2023
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    a8cb2aa View commit details
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  2. Merge branch 'hpc-io:develop' into develop

    @zhangwei217245
    zhangwei217245 authored Jun 21, 2023
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  3. LLSM Importer update: new job script + new data type update on kvtags (… 

    …#92)

* remove unnecessary install block from CMakeLists.txt

* update output

* Revert "update output"

This reverts commit fe1f8b4.

* build kvtag_add_get_scale

* comment off free

* update code

* 1. kvtag_scale_add_get added \n 2. uint64_t support for obj/tag/query count \n 3. moving work assigning block downwards right before creating objects \n 4. everything is tested working

* do while loop added, tested with 1m object and works

* 1m objects test works, 10m object test fail as the original also fails

* add new executable to test set

* enlarge PDC_SERVER_ID_INTERVAL

* update code

* update console args

* add p search test

* add console arg for changing number of attributes per object

* free allocated memory

* fix query count issue

* fix attr length definition

* code refactored

* code refactored

* code refactored

* code refactored

* code refactored

* code refactored

* fix data type

* fix data type

* fix data type

* add client side statistics

* add client side statistics

* fix format

* clang formatter

* update CMake

* update CMake

* update CMake

* free allocated memory properly

* clang format

* clang format

* clang-format-10

* change file name

* address review comments

* update llsm importer

* update llsm importer

* update server checkpoint intervals

* update gitignore

* adding job scripts

* adding one debugging msg

* update container creation to collective mode for debugging purpose

* update container creation to collective mode for debugging purpose

* update container creation to collective mode for debugging purpose

* update container creation to collective mode for debugging purpose

* update output for uint64_t

* add scripts

* update output for uint64_t

* update output for uint64_t

* update output for uint64_t

* update scripts

* update scripts

* delete debugging message

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* update tag names

* update tag names

* update query startingpos

* update query startingpos

* update job scripts

* add progressive timing for kvtag_add_get_scale

* fix iteration count in final report

* update job scripts and benckmark program

* update message format

* update message format

* update message format

* update message format

* clang format

* update job scripts

* comment off object/container close procedure in  benchmark to save node hours

* change the max number of object to 1M

* change the max length of attribute value

* change the max length of attribute value

* llsm tiff import test

* llsm tiff import test

* llsm tiff import test

* llsm tiff import test

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update cmake and llsm_importer

* update cmake and llsm_importer

* close if in cmake

* cmake fix tiff

* cmake policy to suppress warning

* add pdc include dir

* update code

* update code

* update code

* update code

* update code

* update code

* update array generating method

* update array generating method

* update array generating method

* update array generating method

* update CMakeLists

* update CMakeLists

* update CMakeLists

* update CMakeLists

* update CMakeLists

* fix return type

* fix return type

* add timing

* add timing

* fix output

* llsm tiff importer 1st version: read csv and import tiff files to PDC, adding metadata available in CSV files and TIFF loader

* fix vairable name

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* add scripts

* add scripts

* add scripts

* debugging for nonMPI program

* debugging for nonMPI program

* debugging for nonMPI program

* clang format, without PDC, everything works perfectly. program fails at PDC init stage where PDCprop_create(PDC_CONT_CREATE, pdc) is being created

* enable MPI

* enable MPI

* enlarge BCase size

* enlarge BCase size

* enlarge BCase size

* resolve bcast count

* llsm data path in script

* llsm data path in script

* update csv reader

* update csv reader

* update csv reader

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* enlarge max write

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc_import.c

* update pdc_import.c

* update pdc_export.c

* update pdc_import.c

* update pdc_import.c

* update pdc_import.c

* update pdc_import.c

* update tools/cmake

* clang format

* clang format

* added a tutorial for llsm_importer

* added a tutorial for llsm_importer

* make sure the line feed is included for string attribute

* update timing for overall completion time

* update formatting

* update metrics

* forcibly enable openmp

* adding C flags from the mex compiler

* Update .gitlab-ci.yml

* updated code

* clang format

* llsm_importer (#1)

formatter on llsm_importer

* add type for kvtag structure (#2)

* upate metadata type system

* update serde framework to coupe with the new data type system

* replace unnecessary data types

* adding type for pdc_kvtag_t, all occurances are fixed

* update new commons CMake for publishing commons

* commons compilation passed

* compiled

* Feature/metadata type (#3)

* upate metadata type system

* update serde framework to coupe with the new data type system

* replace unnecessary data types

* adding type for pdc_kvtag_t, all occurances are fixed

* update new commons CMake for publishing commons

* commons compilation passed

* compiled

* remove unnecessary header files from installation

* resolve conflict

* add important files

* clang formatting

* update cmake

* update

* print numWorkers

* update scripts

* update script

* update script

* formatting

* update llsm_tools.c

* remove unnecessary hash table init

---------

Co-authored-by: Houjun Tang <htang4@lbl.gov>
Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>
    @zhangwei217245 @houjun @jeanbez
    3 people authored Jun 21, 2023
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Commits on Jun 22, 2023

  1. Merge branch 'hpc-io:develop' into develop

    @zhangwei217245
    zhangwei217245 authored Jun 22, 2023
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Commits on Jun 23, 2023

  1. Update .gitlab-ci.yml

    @jeanbez
    jeanbez authored Jun 23, 2023
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  2. fix warnings, commenting off 'find_path' and 'find_library' for Mercu… 

    …ry in src/commons/CMakeLists.txt (#93)

* Revert "update output"

This reverts commit fe1f8b4.

* build kvtag_add_get_scale

* comment off free

* update code

* 1. kvtag_scale_add_get added \n 2. uint64_t support for obj/tag/query count \n 3. moving work assigning block downwards right before creating objects \n 4. everything is tested working

* do while loop added, tested with 1m object and works

* 1m objects test works, 10m object test fail as the original also fails

* add new executable to test set

* enlarge PDC_SERVER_ID_INTERVAL

* update code

* update console args

* add p search test

* add console arg for changing number of attributes per object

* free allocated memory

* fix query count issue

* fix attr length definition

* code refactored

* code refactored

* code refactored

* code refactored

* code refactored

* code refactored

* fix data type

* fix data type

* fix data type

* add client side statistics

* add client side statistics

* fix format

* clang formatter

* update CMake

* update CMake

* update CMake

* free allocated memory properly

* clang format

* clang format

* clang-format-10

* change file name

* address review comments

* update llsm importer

* update llsm importer

* update server checkpoint intervals

* update gitignore

* adding job scripts

* adding one debugging msg

* update container creation to collective mode for debugging purpose

* update container creation to collective mode for debugging purpose

* update container creation to collective mode for debugging purpose

* update container creation to collective mode for debugging purpose

* update output for uint64_t

* add scripts

* update output for uint64_t

* update output for uint64_t

* update output for uint64_t

* update scripts

* update scripts

* delete debugging message

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* update tag names

* update tag names

* update query startingpos

* update query startingpos

* update job scripts

* add progressive timing for kvtag_add_get_scale

* fix iteration count in final report

* update job scripts and benckmark program

* update message format

* update message format

* update message format

* update message format

* clang format

* update job scripts

* comment off object/container close procedure in  benchmark to save node hours

* change the max number of object to 1M

* change the max length of attribute value

* change the max length of attribute value

* llsm tiff import test

* llsm tiff import test

* llsm tiff import test

* llsm tiff import test

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update cmake and llsm_importer

* update cmake and llsm_importer

* close if in cmake

* cmake fix tiff

* cmake policy to suppress warning

* add pdc include dir

* update code

* update code

* update code

* update code

* update code

* update code

* update array generating method

* update array generating method

* update array generating method

* update array generating method

* update CMakeLists

* update CMakeLists

* update CMakeLists

* update CMakeLists

* update CMakeLists

* fix return type

* fix return type

* add timing

* add timing

* fix output

* llsm tiff importer 1st version: read csv and import tiff files to PDC, adding metadata available in CSV files and TIFF loader

* fix vairable name

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* add scripts

* add scripts

* add scripts

* debugging for nonMPI program

* debugging for nonMPI program

* debugging for nonMPI program

* clang format, without PDC, everything works perfectly. program fails at PDC init stage where PDCprop_create(PDC_CONT_CREATE, pdc) is being created

* enable MPI

* enable MPI

* enlarge BCase size

* enlarge BCase size

* enlarge BCase size

* resolve bcast count

* llsm data path in script

* llsm data path in script

* update csv reader

* update csv reader

* update csv reader

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* enlarge max write

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc_import.c

* update pdc_import.c

* update pdc_export.c

* update pdc_import.c

* update pdc_import.c

* update pdc_import.c

* update pdc_import.c

* update tools/cmake

* clang format

* clang format

* added a tutorial for llsm_importer

* added a tutorial for llsm_importer

* make sure the line feed is included for string attribute

* update timing for overall completion time

* update formatting

* update metrics

* forcibly enable openmp

* adding C flags from the mex compiler

* Update .gitlab-ci.yml

* updated code

* clang format

* llsm_importer (#1)

formatter on llsm_importer

* add type for kvtag structure (#2)

* upate metadata type system

* update serde framework to coupe with the new data type system

* replace unnecessary data types

* adding type for pdc_kvtag_t, all occurances are fixed

* update new commons CMake for publishing commons

* commons compilation passed

* compiled

* Feature/metadata type (#3)

* upate metadata type system

* update serde framework to coupe with the new data type system

* replace unnecessary data types

* adding type for pdc_kvtag_t, all occurances are fixed

* update new commons CMake for publishing commons

* commons compilation passed

* compiled

* remove unnecessary header files from installation

* resolve conflict

* add important files

* clang formatting

* update cmake

* update

* print numWorkers

* update scripts

* update script

* update script

* formatting

* update llsm_tools.c

* remove unnecessary hash table init

* update script

* fix some warnings

* fix some warnings

* update

* update

* fix warning

* update

* update

* update

* update

* update

* update

* update

* update

* update

* fix warnings

* fix warnings

* fix warnings

* fix warnings

* fix warnings

* fix warnings

* fix warnings

* update

* update

* update

* server address and file paths using 1024, TMP_DIR path using 1024/2, NAME_MAX for appname and objname takes 1024/2, HOSTNAME takes 1024/8, NA_INFO_STRING takes 1024/4

* update

* update

* update

* update

---------

Co-authored-by: Houjun Tang <htang4@lbl.gov>
Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>
    @zhangwei217245 @houjun @jeanbez
    3 people authored Jun 23, 2023
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  3. Update clang-format-fix.yml

    @houjun
    houjun authored Jun 23, 2023
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  4. Update clang-format-fix.yml

    @houjun
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Commits on Jun 24, 2023

  1. Merge branch 'hpc-io:develop' into develop

    @zhangwei217245
    zhangwei217245 authored Jun 24, 2023
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Commits on Jun 29, 2023

  1. Increase the default server cache size to 32GB and flush frequency to… 

    … 30s
    @houjun
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  2. Committing clang-format changes

    @github-actions
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  3. Merge branch 'hpc-io:develop' into develop

    @zhangwei217245
    zhangwei217245 authored Jun 29, 2023
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Commits on Jul 10, 2023

  1. add FindMERCURY.cmake

    @zhangwei217245
    zhangwei217245 committed Jul 10, 2023
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  2. Merge branch 'develop' of github.com:zhangwei217245/pdc into hotfix/F… 

    …indMercury1
    @zhangwei217245
    zhangwei217245 committed Jul 10, 2023
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  3. update commons/CMakeLists.txt

    @zhangwei217245
    zhangwei217245 committed Jul 10, 2023
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Commits on Jul 14, 2023

  1. Merge pull request #97 from zhangwei217245/hotfix/FindMercury1 

    Fix NERSC CI issue for FindMercury
    @jeanbez
    jeanbez authored Jul 14, 2023
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Commits on Jul 18, 2023

  1. Fix unnecessary memory allocation (#103)

    @houjun
    houjun authored Jul 18, 2023
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Commits on Jul 19, 2023

  1. Fix an issue with opening a deleted container, added test (#101) 

    * Fix an issue with opening a deleted container, added test

* Refactor the query aggregation process
    @houjun
    houjun authored Jul 19, 2023
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  2. Fix container tag delete error (#102) 

    * Fix container tag delete error

* Committing clang-format changes

* Update tag delete function

* Refactor metdata lookup process for tag deletion

* Committing clang-format changes

* Formatting and comment

* Committing clang-format changes

---------

Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com>
    @houjun @github-actions
    houjun and github-actions[bot] authored Jul 19, 2023
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Commits on Jul 27, 2023

  1. Fix the server cache issue when cache becomes full and needs flush (#113 

    )

* Fix the server cache issue when cache becomes full and need flush

* Committing clang-format changes

---------

Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com>
    @houjun @github-actions
    houjun and github-actions[bot] authored Jul 27, 2023
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  2. Fix a wrong option description. (#115) 

    * upate metadata type system

* update serde framework to coupe with the new data type system

* replace unnecessary data types

* adding type for pdc_kvtag_t, all occurances are fixed

* update new commons CMake for publishing commons

* commons compilation passed

* compiled

* remove unnecessary header files from installation

* resolve conflict

* add important files

* clang formatting

* update cmake

* update option message

---------

Co-authored-by: Houjun Tang <htang4@lbl.gov>
    @zhangwei217245 @houjun
    zhangwei217245 and houjun authored Jul 27, 2023
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Commits on Jul 31, 2023

  1. Install header files needed by PDCpy (#114)

    @houjun
    houjun authored Jul 31, 2023
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Commits on Aug 2, 2023

  1. Support unlimited object dimension size (#117) 

    * Support unlimited object dimension szie

* Add function description for PDC_SIZE_UNLIMITED
    @houjun
    houjun authored Aug 2, 2023
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  2. Fix obj_round_robin_io_all test code

    @houjun
    houjun committed Aug 2, 2023
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  3. Committing clang-format changes

    @github-actions
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Commits on Aug 7, 2023

  1. Merge pull request #118 from hpc-io/fix100 

    Fix obj_round_robin_io_all test code
    @jeanbez
    jeanbez authored Aug 7, 2023
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  2. More header files fix for PDCpy

    @houjun @jeanbez
    houjun authored and jeanbez committed Aug 7, 2023
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Commits on Aug 8, 2023

  1. Fix cmake path (#121) 

    * Fix cmake path

* Fix cmake path
    @houjun
    houjun authored Aug 8, 2023
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Commits on Aug 15, 2023

  1. Kvtag query (#122) 

    * Add a new collective kvtag query api to return full/aggregated results to all clients

* Committing clang-format changes

* Add test code

* Committing clang-format changes

* Add an optimization when multiple clients issue different queries

* Add test program

* Fix free issue

* Committing clang-format changes

---------

Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com>
    @houjun @github-actions
    houjun and github-actions[bot] authored Aug 15, 2023
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Commits on Aug 23, 2023

  1. Rebase develop to stable (#125) 

    * updates in documentation

* update docs

* trigger update

* trigger update

* remove extension

* include docs build dependencies

* update file

* update metrics

* Update .gitlab-ci.yml

* Update .gitlab-ci.yml

* update logo

* Update .gitlab-ci.yml

* adding recovered documentation

* update text

* fix typo

* update CSS

* increase content width

* remove build docs

* Refer documentation to readthedocs website (#95)

* Update README.md

* Update getting_started.rst

* Update getting_started.rst

* include updated text

* fix links

* fix typo

* Update README.md

* update output

* Revert "update output"

This reverts commit fe1f8b4.

* 1. kvtag_scale_add_get added \n 2. uint64_t support for obj/tag/query count \n 3. moving work assigning block downwards right before creating objects \n 4. everything is tested working

* do while loop added, tested with 1m object and works

* 1m objects test works, 10m object test fail as the original also fails

* update code

* add console arg for changing number of attributes per object

* free allocated memory

* fix query count issue

* fix attr length definition

* code refactored

* code refactored

* code refactored

* code refactored

* code refactored

* code refactored

* fix data type

* fix data type

* fix data type

* add client side statistics

* add client side statistics

* fix format

* clang formatter

* update CMake

* clang format

* clang format

* clang-format-10

* change file name

* update llsm importer

* update llsm importer

* adding job scripts

* adding one debugging msg

* update container creation to collective mode for debugging purpose

* update container creation to collective mode for debugging purpose

* update output for uint64_t

* add scripts

* update tag names

* update tag names

* update query startingpos

* update job scripts

* fix iteration count in final report

* update job scripts and benckmark program

* clang format

* update job scripts

* comment off object/container close procedure in  benchmark to save node hours

* change the max number of object to 1M

* change the max length of attribute value

* change the max length of attribute value

* llsm tiff import test

* llsm tiff import test

* llsm tiff import test

* llsm tiff import test

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update cmake and llsm_importer

* update cmake and llsm_importer

* close if in cmake

* cmake fix tiff

* cmake policy to suppress warning

* add pdc include dir

* update code

* update code

* update code

* update code

* update code

* update code

* update array generating method

* update array generating method

* update array generating method

* update array generating method

* update CMakeLists

* update CMakeLists

* update CMakeLists

* update CMakeLists

* update CMakeLists

* fix return type

* fix return type

* add timing

* add timing

* fix output

* llsm tiff importer 1st version: read csv and import tiff files to PDC, adding metadata available in CSV files and TIFF loader

* fix vairable name

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* add scripts

* add scripts

* add scripts

* debugging for nonMPI program

* debugging for nonMPI program

* debugging for nonMPI program

* clang format, without PDC, everything works perfectly. program fails at PDC init stage where PDCprop_create(PDC_CONT_CREATE, pdc) is being created

* enable MPI

* enable MPI

* enlarge BCase size

* enlarge BCase size

* enlarge BCase size

* resolve bcast count

* llsm data path in script

* llsm data path in script

* update csv reader

* update csv reader

* update csv reader

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* enlarge max write

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc_import.c

* update pdc_import.c

* update pdc_export.c

* update pdc_import.c

* update pdc_import.c

* update pdc_import.c

* update pdc_import.c

* update tools/cmake

* clang format

* clang format

* added a tutorial for llsm_importer

* added a tutorial for llsm_importer

* make sure the line feed is included for string attribute

* update timing for overall completion time

* update formatting

* Remove unnecessary fflush call

Signed-off-by: Chen Wang <wangvsa@gmail.com>

* Fix Issue #85, server segfault when another client application with different number of ranks connects to it

* Committing clang-format changes

* update VPIC output timing precision (#88)

* update VPIC output timing precision

* update timing to make consistent

* llsm_importer (#1)

formatter on llsm_importer

* add type for kvtag structure (#2)

* upate metadata type system

* update serde framework to coupe with the new data type system

* replace unnecessary data types

* adding type for pdc_kvtag_t, all occurances are fixed

* update new commons CMake for publishing commons

* commons compilation passed

* compiled

* Feature/metadata type (#3)

* upate metadata type system

* update serde framework to coupe with the new data type system

* replace unnecessary data types

* adding type for pdc_kvtag_t, all occurances are fixed

* update new commons CMake for publishing commons

* commons compilation passed

* compiled

* remove unnecessary header files from installation

* resolve conflict

* add important files

* clang formatting

* update cmake

* add FindMERCURY.cmake

* LLSM Importer update: new job script + new data type update on kvtags (#92)

* remove unnecessary install block from CMakeLists.txt

* update output

* Revert "update output"

This reverts commit fe1f8b4.

* build kvtag_add_get_scale

* comment off free

* update code

* 1. kvtag_scale_add_get added \n 2. uint64_t support for obj/tag/query count \n 3. moving work assigning block downwards right before creating objects \n 4. everything is tested working

* do while loop added, tested with 1m object and works

* 1m objects test works, 10m object test fail as the original also fails

* add new executable to test set

* enlarge PDC_SERVER_ID_INTERVAL

* update code

* update console args

* add p search test

* add console arg for changing number of attributes per object

* free allocated memory

* fix query count issue

* fix attr length definition

* code refactored

* code refactored

* code refactored

* code refactored

* code refactored

* code refactored

* fix data type

* fix data type

* fix data type

* add client side statistics

* add client side statistics

* fix format

* clang formatter

* update CMake

* update CMake

* update CMake

* free allocated memory properly

* clang format

* clang format

* clang-format-10

* change file name

* address review comments

* update llsm importer

* update llsm importer

* update server checkpoint intervals

* update gitignore

* adding job scripts

* adding one debugging msg

* update container creation to collective mode for debugging purpose

* update container creation to collective mode for debugging purpose

* update container creation to collective mode for debugging purpose

* update container creation to collective mode for debugging purpose

* update output for uint64_t

* add scripts

* update output for uint64_t

* update output for uint64_t

* update output for uint64_t

* update scripts

* update scripts

* delete debugging message

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* update tag names

* update tag names

* update query startingpos

* update query startingpos

* update job scripts

* add progressive timing for kvtag_add_get_scale

* fix iteration count in final report

* update job scripts and benckmark program

* update message format

* update message format

* update message format

* update message format

* clang format

* update job scripts

* comment off object/container close procedure in  benchmark to save node hours

* change the max number of object to 1M

* change the max length of attribute value

* change the max length of attribute value

* llsm tiff import test

* llsm tiff import test

* llsm tiff import test

* llsm tiff import test

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update cmake and llsm_importer

* update cmake and llsm_importer

* close if in cmake

* cmake fix tiff

* cmake policy to suppress warning

* add pdc include dir

* update code

* update code

* update code

* update code

* update code

* update code

* update array generating method

* update array generating method

* update array generating method

* update array generating method

* update CMakeLists

* update CMakeLists

* update CMakeLists

* update CMakeLists

* update CMakeLists

* fix return type

* fix return type

* add timing

* add timing

* fix output

* llsm tiff importer 1st version: read csv and import tiff files to PDC, adding metadata available in CSV files and TIFF loader

* fix vairable name

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* add scripts

* add scripts

* add scripts

* debugging for nonMPI program

* debugging for nonMPI program

* debugging for nonMPI program

* clang format, without PDC, everything works perfectly. program fails at PDC init stage where PDCprop_create(PDC_CONT_CREATE, pdc) is being created

* enable MPI

* enable MPI

* enlarge BCase size

* enlarge BCase size

* enlarge BCase size

* resolve bcast count

* llsm data path in script

* llsm data path in script

* update csv reader

* update csv reader

* update csv reader

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* enlarge max write

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc_import.c

* update pdc_import.c

* update pdc_export.c

* update pdc_import.c

* update pdc_import.c

* update pdc_import.c

* update pdc_import.c

* update tools/cmake

* clang format

* clang format

* added a tutorial for llsm_importer

* added a tutorial for llsm_importer

* make sure the line feed is included for string attribute

* update timing for overall completion time

* update formatting

* update metrics

* forcibly enable openmp

* adding C flags from the mex compiler

* Update .gitlab-ci.yml

* updated code

* clang format

* llsm_importer (#1)

formatter on llsm_importer

* add type for kvtag structure (#2)

* upate metadata type system

* update serde framework to coupe with the new data type system

* replace unnecessary data types

* adding type for pdc_kvtag_t, all occurances are fixed

* update new commons CMake for publishing commons

* commons compilation passed

* compiled

* Feature/metadata type (#3)

* upate metadata type system

* update serde framework to coupe with the new data type system

* replace unnecessary data types

* adding type for pdc_kvtag_t, all occurances are fixed

* update new commons CMake for publishing commons

* commons compilation passed

* compiled

* remove unnecessary header files from installation

* resolve conflict

* add important files

* clang formatting

* update cmake

* update

* print numWorkers

* update scripts

* update script

* update script

* formatting

* update llsm_tools.c

* remove unnecessary hash table init

---------

Co-authored-by: Houjun Tang <htang4@lbl.gov>
Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>

* fix warnings, commenting off 'find_path' and 'find_library' for Mercury in src/commons/CMakeLists.txt  (#93)

* Revert "update output"

This reverts commit fe1f8b4.

* build kvtag_add_get_scale

* comment off free

* update code

* 1. kvtag_scale_add_get added \n 2. uint64_t support for obj/tag/query count \n 3. moving work assigning block downwards right before creating objects \n 4. everything is tested working

* do while loop added, tested with 1m object and works

* 1m objects test works, 10m object test fail as the original also fails

* add new executable to test set

* enlarge PDC_SERVER_ID_INTERVAL

* update code

* update console args

* add p search test

* add console arg for changing number of attributes per object

* free allocated memory

* fix query count issue

* fix attr length definition

* code refactored

* code refactored

* code refactored

* code refactored

* code refactored

* code refactored

* fix data type

* fix data type

* fix data type

* add client side statistics

* add client side statistics

* fix format

* clang formatter

* update CMake

* update CMake

* update CMake

* free allocated memory properly

* clang format

* clang format

* clang-format-10

* change file name

* address review comments

* update llsm importer

* update llsm importer

* update server checkpoint intervals

* update gitignore

* adding job scripts

* adding one debugging msg

* update container creation to collective mode for debugging purpose

* update container creation to collective mode for debugging purpose

* update container creation to collective mode for debugging purpose

* update container creation to collective mode for debugging purpose

* update output for uint64_t

* add scripts

* update output for uint64_t

* update output for uint64_t

* update output for uint64_t

* update scripts

* update scripts

* delete debugging message

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* make Cmake to publish scripts directory

* update tag names

* update tag names

* update query startingpos

* update query startingpos

* update job scripts

* add progressive timing for kvtag_add_get_scale

* fix iteration count in final report

* update job scripts and benckmark program

* update message format

* update message format

* update message format

* update message format

* clang format

* update job scripts

* comment off object/container close procedure in  benchmark to save node hours

* change the max number of object to 1M

* change the max length of attribute value

* change the max length of attribute value

* llsm tiff import test

* llsm tiff import test

* llsm tiff import test

* llsm tiff import test

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update code

* update cmake and llsm_importer

* update cmake and llsm_importer

* close if in cmake

* cmake fix tiff

* cmake policy to suppress warning

* add pdc include dir

* update code

* update code

* update code

* update code

* update code

* update code

* update array generating method

* update array generating method

* update array generating method

* update array generating method

* update CMakeLists

* update CMakeLists

* update CMakeLists

* update CMakeLists

* update CMakeLists

* fix return type

* fix return type

* add timing

* add timing

* fix output

* llsm tiff importer 1st version: read csv and import tiff files to PDC, adding metadata available in CSV files and TIFF loader

* fix vairable name

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* fix cmake

* add scripts

* add scripts

* add scripts

* debugging for nonMPI program

* debugging for nonMPI program

* debugging for nonMPI program

* clang format, without PDC, everything works perfectly. program fails at PDC init stage where PDCprop_create(PDC_CONT_CREATE, pdc) is being created

* enable MPI

* enable MPI

* enlarge BCase size

* enlarge BCase size

* enlarge BCase size

* resolve bcast count

* llsm data path in script

* llsm data path in script

* update csv reader

* update csv reader

* update csv reader

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc

* enlarge max write

* update pdc

* update pdc

* update pdc

* update pdc

* update pdc_import.c

* update pdc_import.c

* update pdc_export.c

* update pdc_import.c

* update pdc_import.c

* update pdc_import.c

* update pdc_import.c

* update tools/cmake

* clang format

* clang format

* added a tutorial for llsm_importer

* added a tutorial for llsm_importer

* make sure the line feed is included for string attribute

* update timing for overall completion time

* update formatting

* update metrics

* forcibly enable openmp

* adding C flags from the mex compiler

* Update .gitlab-ci.yml

* updated code

* clang format

* llsm_importer (#1)

formatter on llsm_importer

* add type for kvtag structure (#2)

* upate metadata type system

* update serde framework to coupe with the new data type system

* replace unnecessary data types

* adding type for pdc_kvtag_t, all occurances are fixed

* update new commons CMake for publishing commons

* commons compilation passed

* compiled

* Feature/metadata type (#3)

* upate metadata type system

* update serde framework to coupe with the new data type system

* replace unnecessary data types

* adding type for pdc_kvtag_t, all occurances are fixed

* update new commons CMake for publishing commons

* commons compilation passed

* compiled

* remove unnecessary header files from installation

* resolve conflict

* add important files

* clang formatting

* update cmake

* update

* print numWorkers

* update scripts

* update script

* update script

* formatting

* update llsm_tools.c

* remove unnecessary hash table init

* update script

* fix some warnings

* fix some warnings

* update

* update

* fix warning

* update

* update

* update

* update

* update

* update

* update

* update

* update

* fix warnings

* fix warnings

* fix warnings

* fix warnings

* fix warnings

* fix warnings

* fix warnings

* update

* update

* update

* server address and file paths using 1024, TMP_DIR path using 1024/2, NAME_MAX for appname and objname takes 1024/2, HOSTNAME takes 1024/8, NA_INFO_STRING takes 1024/4

* update

* update

* update

* update

---------

Co-authored-by: Houjun Tang <htang4@lbl.gov>
Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>

* Update clang-format-fix.yml

* Update clang-format-fix.yml

* Increase the default server cache size to 32GB and flush frequency to 30s

* Committing clang-format changes

* update commons/CMakeLists.txt

* Fix unnecessary memory allocation (#103)

* Fix an issue with opening a deleted container, added test (#101)

* Fix an issue with opening a deleted container, added test

* Refactor the query aggregation process

* Fix container tag delete error (#102)

* Fix container tag delete error

* Committing clang-format changes

* Update tag delete function

* Refactor metdata lookup process for tag deletion

* Committing clang-format changes

* Formatting and comment

* Committing clang-format changes

---------

Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com>

* Fix the server cache issue when cache becomes full and needs flush (#113)

* Fix the server cache issue when cache becomes full and need flush

* Committing clang-format changes

---------

Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com>

* Fix a wrong option description. (#115)

* upate metadata type system

* update serde framework to coupe with the new data type system

* replace unnecessary data types

* adding type for pdc_kvtag_t, all occurances are fixed

* update new commons CMake for publishing commons

* commons compilation passed

* compiled

* remove unnecessary header files from installation

* resolve conflict

* add important files

* clang formatting

* update cmake

* update option message

---------

Co-authored-by: Houjun Tang <htang4@lbl.gov>

* Install header files needed by PDCpy (#114)

* Support unlimited object dimension size (#117)

* Support unlimited object dimension szie

* Add function description for PDC_SIZE_UNLIMITED

* Fix obj_round_robin_io_all test code

* Committing clang-format changes

* More header files fix for PDCpy

* Fix cmake path (#121)

* Fix cmake path

* Fix cmake path

* Kvtag query (#122)

* Add a new collective kvtag query api to return full/aggregated results to all clients

* Committing clang-format changes

* Add test code

* Committing clang-format changes

* Add an optimization when multiple clients issue different queries

* Add test program

* Fix free issue

* Committing clang-format changes

---------

Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com>

* fix conflict issue

* fix conflict issue

---------

Signed-off-by: Chen Wang <wangvsa@gmail.com>
Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>
Co-authored-by: Wei Zhang <zhangwei217245@gmail.com>
Co-authored-by: Chen Wang <wangvsa@gmail.com>
Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com>
Co-authored-by: Wei Zhang <zhangwei217245@lbl.gov>
    @houjun @jeanbez
    @zhangwei217245 @wangvsa @github-actions
    6 people authored Aug 23, 2023
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Commits on Aug 25, 2023

  1. remove gitmodules file (#131)

    @houjun
    houjun authored Aug 25, 2023
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Commits on Aug 26, 2023

  1. Fix tests (#129) 

    * Fix test

* Fix region_transfer_all_append test

* Committing clang-format changes

* Fix cont_tags with MPI

---------

Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com>
    @houjun @github-actions
    houjun and github-actions[bot] authored Aug 26, 2023
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Commits on Aug 27, 2023

  1. DART Integration (#124) 

    DART-Integration


---------

Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com>
Co-authored-by: Houjun Tang <htang4@lbl.gov>
    @zhangwei217245 @github-actions @houjun
    3 people authored Aug 27, 2023
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Commits on Aug 29, 2023

  1. update to new CI flow

    @jeanbez
    jeanbez authored Aug 29, 2023
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  2. migrate to new setup

    @jeanbez
    jeanbez committed Aug 29, 2023
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Commits on Aug 31, 2023

  1. update doc

    @zhangwei217245 @jeanbez
    zhangwei217245 authored and jeanbez committed Aug 31, 2023
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  2. update

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  3. update

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  4. update

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  5. update

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    zhangwei217245 authored and jeanbez committed Aug 31, 2023
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  6. update

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  7. update

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    zhangwei217245 authored and jeanbez committed Aug 31, 2023
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  8. update

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  9. update

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  10. update

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    zhangwei217245 authored and jeanbez committed Aug 31, 2023
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  11. update

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    zhangwei217245 authored and jeanbez committed Aug 31, 2023
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  12. update

    @zhangwei217245 @jeanbez
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  13. pdc import, export, ls compiled successfully (#123) 

    * pdc import, export, ls compiled successfully

* removed requested files

* formatting issues

* changed install tools

---------

Co-authored-by: Houjun Tang <htang4@lbl.gov>
    @nickaruwang @houjun
    nickaruwang and houjun authored Aug 31, 2023
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Commits on Sep 13, 2023

  1. Update nersc.yml

    @jeanbez
    jeanbez authored Sep 13, 2023
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  2. Update nersc.yml

    @jeanbez
    jeanbez authored Sep 13, 2023
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  3. Update nersc.yml

    @jeanbez
    jeanbez authored Sep 13, 2023
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Commits on Sep 15, 2023

  1. fix MAX_CACHE_SIZE compilation issue

    @zhangwei217245 @jeanbez
    zhangwei217245 authored and jeanbez committed Sep 15, 2023
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Commits on Oct 10, 2023

  1. Compile parallel tests only when PDC_ENABLE_MPI is ON (#144)

    @houjun
    houjun authored Oct 10, 2023
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Commits on Oct 11, 2023

  1. Remove copy of Spack recipe (#135) 

    Remove this from our repository
    @jeanbez
    jeanbez authored Oct 11, 2023
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Commits on Oct 12, 2023

  1. Include GitHub templates (#145) 

    * Include GitHub templates
* Update bug_report.md
* Update feature_request.md
    @jeanbez
    jeanbez authored Oct 12, 2023
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Commits on Oct 13, 2023

  1. IDIOMS v0.9 (#151) 

    Major changes:

DART integration - single-client v.s. multi-client queries, suffix-tree mode
Benchmark -> mpi_query_scale_col
docker support for local development (very useful if you don't have a proper linux environment) Develop a docker image for developing/testing/debugging PDC. #150
Other changes:

unifying all work_todo_g and bulk_todo_g to use atomic operations
Github codespace support -> initiative
fixing duplicated FindMercury.cmake cmake find Mercury and MPI #149
    @zhangwei217245
    zhangwei217245 authored Oct 13, 2023
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  2. Merge branch 'stable' into develop

    @jeanbez
    jeanbez committed Oct 13, 2023
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Commits on Oct 20, 2023

  1. Use cc on Perlmutter (#161) 

    Dr. Tang fixed a compilation issue in NERSC CI where HDF5 cannot be detected even if the cray-parallel-hdf5 module is loaded on Perlmultter.
    @houjun
    houjun authored Oct 20, 2023
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Commits on Oct 23, 2023

  1. Fix pdc ls (#154) 

    * pdc import, export, ls compiled successfully

* removed requested files

* formatting issues

* changed install tools

* gets checkpoint files

* grabbing checkpoint files from within sub-directories, minor comments

* Committing clang-format changes

* Committing clang-format changes

* Fix a few issues with pdc_ls

* Committing clang-format changes

---------

Co-authored-by: nickaruwang <nickwan0318@gmail.com>
Co-authored-by: Nick Wang <66816536+nickaruwang@users.noreply.github.com>
Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com>
Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>
    @houjun @nickaruwang
    @github-actions @jeanbez
    5 people authored Oct 23, 2023
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Commits on Oct 31, 2023

  1. Complete support for Docker and Github Codespace (#157) 

    Include support for Docker and Github Codespace so we can run our dev environment with the support of Docker.
    @zhangwei217245
    zhangwei217245 authored Oct 31, 2023
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Commits on Nov 26, 2023

  1. SQLite and RocksDB support for KVtags (#165) 

    SQLite and RocksDB support for KVtags
    @houjun
    houjun authored Nov 26, 2023
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Commits on Nov 27, 2023

  1. Update requirements.txt (#166)

    @jeanbez
    jeanbez authored Nov 27, 2023
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Commits on Dec 18, 2023

  1. fixes for MacOS and new CI to prevent future breaks (#164) 

    * include MacOS in CI
* include dependencies
* replace TCP with sockets
* add libuuid
* fix find UUID to correctly locate files in Ubuntu and MacOS
* fix random segfault in strdup + malloc due to wrong allocation
* ensure consistent use of defined variables
* change transport for MacOS tests
* update env
* update dependencies-macos.sh
* replace found to TRUE/FALSE
* update documentation with timeout and MacOS specifics
* fix git link to avoid authentication
* change transport for tests
* configure network for MacOS tests

---------

Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com>
    @jeanbez @github-actions
    jeanbez and github-actions[bot] authored Dec 18, 2023
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  2. Enable cache/no-cache PDC CI tests (#171) 

    CI with cache and no-cache versions of PDC
    @jeanbez
    jeanbez authored Dec 18, 2023
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Commits on Jan 9, 2024

  1. Resolving conflict between develop and stable (#173) 

    * Synchronize stable with develop branch (#152)
* Resolve conflicts
    @zhangwei217245
    zhangwei217245 authored Jan 9, 2024
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  2. Synchronize stable with develop branch (#152) (#175) 

    Synchronize stable with develop branch
    @jeanbez
    jeanbez authored Jan 9, 2024
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Commits on Jan 22, 2024

  1. fix conflicts

    @jeanbez
    jeanbez committed Jan 22, 2024
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