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Try to simplify params.tools usage #6288

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Try to simplify params.tools usage

Try to simplify params.tools usage #6288

Run time

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Job Run time
Check for changes (nf-test)
4s
Check for changes (nf-test)
4s
Check for changes (pytest)
5s
Check for changes (pytest)
5s
pipeline_sarek docker NF 23.04.0
5m 33s
pipeline_sarek docker NF 23.04.0
5m 2s
pipeline_sarek docker NF latest-everything
4m 16s
pipeline_sarek docker NF latest-everything
5m 0s
default docker NF 23.04.0
5m 19s
default docker NF 23.04.0
5m 19s
default docker NF latest-everything
5m 28s
default docker NF latest-everything
5m 28s
tumor_normal_pair docker NF 23.04.0
6m 40s
tumor_normal_pair docker NF 23.04.0
6m 40s
tumor_normal_pair docker NF latest-everything
14m 31s
tumor_normal_pair docker NF latest-everything
14m 31s
save_mapped_only docker NF 23.04.0
9m 16s
save_mapped_only docker NF 23.04.0
9m 16s
save_mapped_only docker NF latest-everything
7m 25s
save_mapped_only docker NF latest-everything
7m 25s
save_output_as_bam_only docker NF 23.04.0
11m 4s
save_output_as_bam_only docker NF 23.04.0
11m 4s
save_output_as_bam_only docker NF latest-everything
5m 23s
save_output_as_bam_only docker NF latest-everything
5m 23s
skip_all_qc docker NF 23.04.0
9m 27s
skip_all_qc docker NF 23.04.0
7m 44s
skip_all_qc docker NF latest-everything
9m 22s
skip_all_qc docker NF latest-everything
7m 20s
skip_markduplicates docker NF 23.04.0
11m 46s
skip_markduplicates docker NF 23.04.0
11m 46s
skip_markduplicates docker NF latest-everything
11m 43s
skip_markduplicates docker NF latest-everything
11m 43s
validation_checks docker NF 23.04.0
2m 58s
validation_checks docker NF 23.04.0
2m 58s
validation_checks docker NF latest-everything
3m 29s
validation_checks docker NF latest-everything
3m 29s
alignment_from_everything docker NF 23.04.0
6m 23s
alignment_from_everything docker NF 23.04.0
6m 23s
alignment_from_everything docker NF latest-everything
6m 34s
alignment_from_everything docker NF latest-everything
6m 34s
bwamem docker NF 23.04.0
6m 11s
bwamem docker NF 23.04.0
6m 11s
bwamem docker NF latest-everything
8m 8s
bwamem docker NF latest-everything
8m 8s
bwamem2 docker NF 23.04.0
7m 34s
bwamem2 docker NF 23.04.0
7m 34s
bwamem2 docker NF latest-everything
5m 48s
bwamem2 docker NF latest-everything
5m 48s
dragmap docker NF 23.04.0
21m 32s
dragmap docker NF 23.04.0
21m 32s
dragmap docker NF latest-everything
7m 58s
dragmap docker NF latest-everything
7m 58s
gatk4/markduplicates docker NF 23.04.0
14m 26s
gatk4/markduplicates docker NF 23.04.0
14m 26s
gatk4/markduplicates docker NF latest-everything
6m 28s
gatk4/markduplicates docker NF latest-everything
6m 28s
recalibrate docker NF 23.04.0
12m 41s
recalibrate docker NF 23.04.0
12m 41s
recalibrate docker NF latest-everything
8m 17s
recalibrate docker NF latest-everything
8m 17s
gatk4spark docker NF 23.04.0
19m 12s
gatk4spark docker NF 23.04.0
17m 40s
gatk4spark docker NF latest-everything
19m 26s
gatk4spark docker NF latest-everything
16m 53s
cnvkit docker NF 23.04.0
17m 24s
cnvkit docker NF 23.04.0
17m 24s
cnvkit docker NF latest-everything
12m 48s
cnvkit docker NF latest-everything
12m 48s
controlfreec docker NF 23.04.0
8m 13s
controlfreec docker NF 23.04.0
8m 13s
controlfreec docker NF latest-everything
7m 47s
controlfreec docker NF latest-everything
7m 47s
deepvariant docker NF 23.04.0
33m 17s
deepvariant docker NF 23.04.0
33m 17s
deepvariant docker NF latest-everything
36m 2s
deepvariant docker NF latest-everything
36m 2s
freebayes docker NF 23.04.0
17m 11s
freebayes docker NF 23.04.0
17m 11s
freebayes docker NF latest-everything
14m 16s
freebayes docker NF latest-everything
14m 16s
haplotypecaller docker NF 23.04.0
12m 59s
haplotypecaller docker NF 23.04.0
12m 59s
haplotypecaller docker NF latest-everything
8m 59s
haplotypecaller docker NF latest-everything
8m 59s
haplotypecaller_skip_filter docker NF 23.04.0
5m 15s
haplotypecaller_skip_filter docker NF 23.04.0
5m 15s
haplotypecaller_skip_filter docker NF latest-everything
4m 48s
haplotypecaller_skip_filter docker NF latest-everything
4m 48s
joint_germline docker NF 23.04.0
7m 48s
joint_germline docker NF 23.04.0
7m 48s
manta docker NF 23.04.0
10m 12s
manta docker NF 23.04.0
10m 12s
manta docker NF latest-everything
8m 19s
manta docker NF latest-everything
8m 19s
mpileup docker NF 23.04.0
7m 51s
mpileup docker NF 23.04.0
7m 51s
mpileup docker NF latest-everything
9m 58s
mpileup docker NF latest-everything
9m 58s
mutect2 docker NF 23.04.0
11m 43s
mutect2 docker NF 23.04.0
11m 43s
mutect2 docker NF latest-everything
16m 35s
mutect2 docker NF latest-everything
16m 35s
strelka docker NF 23.04.0
14m 37s
strelka docker NF 23.04.0
14m 37s
strelka docker NF latest-everything
15m 55s
strelka docker NF latest-everything
15m 55s
strelka_bp docker NF 23.04.0
7m 11s
strelka_bp docker NF 23.04.0
7m 11s
strelka_bp docker NF latest-everything
13m 44s
strelka_bp docker NF latest-everything
13m 44s
lofreq docker NF 23.04.0
8m 19s
lofreq docker NF 23.04.0
8m 19s
lofreq docker NF latest-everything
8m 58s
lofreq docker NF latest-everything
8m 58s
tiddit docker NF 23.04.0
6m 22s
tiddit docker NF 23.04.0
6m 22s
tiddit docker NF latest-everything
8m 31s
tiddit docker NF latest-everything
8m 31s
merge docker NF 23.04.0
6m 7s
merge docker NF 23.04.0
6m 7s
merge docker NF latest-everything
5m 56s
merge docker NF latest-everything
5m 56s
snpeff docker NF 23.04.0
5m 53s
snpeff docker NF 23.04.0
5m 53s
snpeff docker NF latest-everything
5m 39s
snpeff docker NF latest-everything
5m 39s
vep docker NF 23.04.0
8m 18s
vep docker NF 23.04.0
8m 18s
vep docker NF latest-everything
9m 28s
vep docker NF latest-everything
9m 28s
bcfann docker NF 23.04.0
11m 32s
bcfann docker NF 23.04.0
11m 32s
bcfann docker NF latest-everything
11m 38s
bcfann docker NF latest-everything
11m 38s
ngscheckmate docker NF 23.04.0
7m 5s
ngscheckmate docker NF 23.04.0
7m 5s
ngscheckmate docker NF latest-everything
6m 43s
ngscheckmate docker NF latest-everything
6m 43s
confirm-pass
1s
confirm-pass
1s
22h 48m 1s