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Dummy PR : testing docker container options in GATK Spark modules #5729

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Dummy PR : testing docker container options in GATK Spark modules

Dummy PR : testing docker container options in GATK Spark modules #5729

Re-run triggered March 4, 2024 22:30
@asp8200asp8200
#1430
asp8200:fix_docker_runoptions
Status Success
Total duration 6m 37s
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20 warnings
pipeline_sarek docker NF latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
tumor_normal_pair docker NF 23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, nf-core/setup-nextflow@v1, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
default docker NF 23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, nf-core/setup-nextflow@v1, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
tumor_normal_pair docker NF latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, nf-core/setup-nextflow@v1, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
save_output_as_bam_only docker NF 23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, nf-core/setup-nextflow@v1, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
default docker NF latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, nf-core/setup-nextflow@v1, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
skip_all_qc docker NF 23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, nf-core/setup-nextflow@v1, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
save_output_as_bam_only docker NF latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, nf-core/setup-nextflow@v1, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
save_mapped_only docker NF latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, nf-core/setup-nextflow@v1, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
save_mapped_only docker NF 23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, nf-core/setup-nextflow@v1, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
skip_all_qc docker NF latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, nf-core/setup-nextflow@v1, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
validation_checks docker NF 23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, nf-core/setup-nextflow@v1, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
skip_markduplicates docker NF latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, nf-core/setup-nextflow@v1, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
skip_markduplicates docker NF 23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, nf-core/setup-nextflow@v1, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
gatk4spark docker NF latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, nf-core/setup-nextflow@v1, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
validation_checks docker NF latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, nf-core/setup-nextflow@v1, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
joint_germline docker NF latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, nf-core/setup-nextflow@v1, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
gatk4spark docker NF 23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, nf-core/setup-nextflow@v1, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
joint_germline docker NF 23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v4, nf-core/setup-nextflow@v1, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pipeline_sarek docker NF 23.04.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-java@v3, nf-core/setup-nextflow@v1, actions/cache@v3, conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.