Merge pull request #1462 from maxulysse/ascat_fix

Ascat fix
nf-core · Apr 12, 2024 · 3c70f34 · 3c70f34
2 parents e217b06 + 6001f7b
commit 3c70f34
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -54,6 +54,7 @@ Balgattjåhkkå is the other top peak (over 2k m) in the Pårte massif, the othe
 - [#1407](https://github.com/nf-core/sarek/pull/1407) - Fix CI tests name
 - [#1420](https://github.com/nf-core/sarek/pull/1420) - Make `-a` a default argument for `bcftools` concat
 - [#1422](https://github.com/nf-core/sarek/pull/1422) - Fix `Cannot serialize context map` warning
+- [#1462](https://github.com/nf-core/sarek/pull/1462) - Fix ascat input channels
 
 ### Removed
 

diff --git a/subworkflows/local/bam_variant_calling_somatic_all/main.nf b/subworkflows/local/bam_variant_calling_somatic_all/main.nf
@@ -60,7 +60,7 @@ workflow BAM_VARIANT_CALLING_SOMATIC_ALL {
             allele_files,
             loci_files,
             (wes ? intervals_bed_combined : []), // No intervals needed if not WES
-            fasta,
+            fasta.map{ meta, fasta -> [ fasta ] },
             gc_file,
             rt_file
         )