remove gvcf vcfs from csv for restart

nf-core · Jul 11, 2023 · 81dde8c · asp8200 · Jul 11, 2023 · 81dde8c
1 parent c36a726
commit 81dde8c
Showing 1 changed file with 0 additions and 2 deletions.
diff --git a/workflows/sarek.nf b/workflows/sarek.nf
@@ -1065,8 +1065,6 @@ workflow SAREK {
         reports = reports.mix(VCF_QC_BCFTOOLS_VCFTOOLS.out.vcftools_tstv_qual.collect{ meta, qual -> qual })
         reports = reports.mix(VCF_QC_BCFTOOLS_VCFTOOLS.out.vcftools_filter_summary.collect{ meta, summary -> summary })
 
-        vcf_to_csv = vcf_to_annotate.mix(BAM_VARIANT_CALLING_GERMLINE_ALL.out.gvcf_sentieon_haplotyper)
-
         CHANNEL_VARIANT_CALLING_CREATE_CSV(vcf_to_csv)
 
         // Gather used variant calling softwares versions